Wall clock time and date at job start Wed Apr 1 2020 04:36:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36740 * 127.13559 * 2 1 4 4 C 1.50693 * 126.34757 * 359.97438 * 3 2 1 5 5 H 1.08997 * 115.55514 * 25.72229 * 4 3 2 6 6 C 1.53011 * 117.49774 * 171.39334 * 4 3 2 7 7 C 1.52993 * 60.03098 * 107.49938 * 6 4 3 8 8 H 1.08997 * 117.50262 * 252.52187 * 7 6 4 9 9 C 1.53004 * 117.49953 * 107.50469 * 7 6 4 10 10 C 1.52999 * 109.47586 * 111.38884 * 9 7 6 11 11 C 1.53006 * 109.47159 * 231.39330 * 9 7 6 12 12 C 1.53001 * 109.46991 * 351.38418 * 9 7 6 13 13 N 1.30292 * 107.30246 * 180.26192 * 3 2 1 14 14 N 1.28532 * 110.05630 * 359.55466 * 13 3 2 15 15 C 1.31215 * 109.85676 * 0.45836 * 14 13 3 16 16 N 1.38583 * 126.47307 * 179.72927 * 15 14 13 17 17 C 1.46954 * 111.00133 * 61.98259 * 16 15 14 18 18 C 1.53055 * 109.36145 * 176.81514 * 17 16 15 19 19 N 1.46958 * 109.36715 * 58.39801 * 18 17 16 20 20 C 1.46900 * 110.99584 * 176.80779 * 19 18 17 21 21 C 1.50699 * 109.47528 * 293.79842 * 20 19 18 22 22 H 1.08000 * 120.00064 * 0.02562 * 21 20 19 23 23 C 1.37875 * 119.99863 * 179.97438 * 21 20 19 24 24 N 1.31519 * 120.00135 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99779 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47132 * 60.00803 * 25 23 21 27 27 H 1.48500 * 109.47267 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47560 * 300.00722 * 25 23 21 29 29 C 1.46953 * 110.87945 * 300.68034 * 19 18 17 30 30 C 1.46958 * 110.99739 * 298.18038 * 16 15 14 31 31 H 1.09002 * 109.46814 * 85.22033 * 1 2 3 32 32 H 1.09000 * 109.46909 * 205.22530 * 1 2 3 33 33 H 1.09002 * 109.46870 * 325.22733 * 1 2 3 34 34 H 1.08994 * 117.49600 * 215.00496 * 6 4 3 35 35 H 1.08998 * 117.49342 * 359.97438 * 6 4 3 36 36 H 1.08997 * 109.47027 * 59.99928 * 10 9 7 37 37 H 1.08995 * 109.47074 * 180.02562 * 10 9 7 38 38 H 1.09004 * 109.46647 * 300.00276 * 10 9 7 39 39 H 1.08995 * 109.47536 * 59.99287 * 11 9 7 40 40 H 1.08995 * 109.47187 * 180.02562 * 11 9 7 41 41 H 1.09010 * 109.46586 * 299.99248 * 11 9 7 42 42 H 1.09005 * 109.46652 * 60.00502 * 12 9 7 43 43 H 1.09001 * 109.47317 * 179.97438 * 12 9 7 44 44 H 1.08996 * 109.47660 * 300.00301 * 12 9 7 45 45 H 1.09003 * 109.48698 * 296.77989 * 17 16 15 46 46 H 1.08999 * 109.49032 * 56.84492 * 17 16 15 47 47 H 1.08998 * 109.48452 * 298.42893 * 18 17 16 48 48 H 1.09003 * 109.50600 * 178.38038 * 18 17 16 49 49 H 1.09000 * 109.46948 * 53.80590 * 20 19 18 50 50 H 1.09004 * 109.46844 * 173.80123 * 20 19 18 51 51 H 0.96995 * 119.99878 * 179.97438 * 24 23 21 52 52 H 1.09003 * 109.48786 * 299.35094 * 29 19 18 53 53 H 1.09000 * 109.50246 * 179.30331 * 29 19 18 54 54 H 1.09006 * 109.48987 * 303.15635 * 30 16 15 55 55 H 1.08996 * 109.48671 * 63.22322 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2906 1.0901 0.0000 4 6 1.8621 2.5348 -0.0005 5 1 0.8790 2.7339 0.4258 6 6 2.9478 3.5937 0.2027 7 6 2.3124 3.4055 -1.1763 8 1 2.9183 2.9329 -1.9494 9 6 1.3481 4.4888 -1.6637 10 6 1.9785 5.2429 -2.8361 11 6 0.0397 3.8395 -2.1193 12 6 1.0615 5.4672 -0.5229 13 7 3.5162 0.6481 -0.0057 14 7 3.5212 -0.6372 0.0001 15 6 2.2888 -1.0878 0.0001 16 7 1.8978 -2.4173 0.0001 17 6 2.3673 -3.1043 1.2114 18 6 1.8488 -4.5444 1.2112 19 7 2.3219 -5.2325 0.0019 20 6 1.9074 -6.6418 0.0020 21 6 2.6051 -7.3706 1.1214 22 1 3.2879 -6.8399 1.7684 23 6 2.3710 -8.7147 1.3203 24 7 1.5391 -9.3609 0.5327 25 14 3.2353 -9.6180 2.7083 26 1 2.8719 -8.9948 4.0063 27 1 2.8163 -11.0426 2.7083 28 1 4.7051 -9.5347 2.5135 29 6 1.8524 -4.5454 -1.2093 30 6 2.3709 -3.1054 -1.2091 31 1 -0.3633 0.0856 -1.0241 32 1 -0.3633 -0.9297 0.4380 33 1 -0.3633 0.8442 0.5861 34 1 2.6788 4.4892 0.7628 35 1 3.9718 3.2452 0.3372 36 1 2.1826 4.5459 -3.6488 37 1 1.2917 6.0149 -3.1830 38 1 2.9106 5.7055 -2.5115 39 1 -0.4094 3.3022 -1.2841 40 1 -0.6471 4.6111 -2.4669 41 1 0.2439 3.1424 -2.9321 42 1 1.9936 5.9298 -0.1983 43 1 0.3749 6.2392 -0.8701 44 1 0.6123 4.9300 0.3124 45 1 3.4572 -3.1102 1.2267 46 1 1.9937 -2.5834 2.0929 47 1 0.7589 -4.5384 1.2233 48 1 2.2195 -5.0648 2.0943 49 1 0.8286 -6.7032 0.1452 50 1 2.1740 -7.0990 -0.9509 51 1 1.3747 -10.3066 0.6724 52 1 0.7625 -4.5395 -1.2246 53 1 2.2256 -5.0663 -2.0910 54 1 1.9998 -2.5852 -2.0923 55 1 3.4608 -3.1113 -1.2212 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646671297.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:33 Heat of formation + Delta-G solvation = 97.059524 kcal Electronic energy + Delta-G solvation = -31174.277674 eV Core-core repulsion = 27247.765556 eV Total energy + Delta-G solvation = -3926.512118 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.238 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -44.10387 -40.41994 -39.97867 -36.86841 -35.97629 -35.15837 -34.50165 -32.07722 -31.10258 -29.38600 -28.43376 -28.16417 -28.08857 -26.78215 -25.10453 -24.67491 -23.87231 -23.62737 -22.32747 -21.46132 -20.47696 -19.29891 -18.55337 -18.46321 -17.61364 -17.45396 -16.82582 -16.60021 -16.12182 -15.95088 -15.81070 -15.56777 -15.32498 -14.98422 -14.77948 -14.55790 -14.34205 -14.15645 -14.00102 -13.53702 -13.51211 -13.30009 -13.19337 -13.13883 -12.84060 -12.69907 -12.60202 -12.51694 -12.38913 -12.35945 -12.27658 -12.20023 -12.06239 -12.00926 -11.69023 -11.65979 -11.46590 -11.45775 -11.26355 -11.06830 -10.96131 -10.60663 -10.00184 -9.88191 -9.06746 -8.20104 -6.29828 0.56382 1.15073 1.41869 1.44769 1.52530 1.62060 2.40556 2.59236 2.84674 3.11598 3.17761 3.20489 3.56652 3.70527 3.77977 3.86420 3.90989 3.98125 4.00844 4.14065 4.18496 4.25461 4.26896 4.28618 4.34886 4.42265 4.43321 4.61199 4.62025 4.64498 4.68034 4.82887 4.85364 4.86658 4.87766 4.92674 4.97039 4.98672 5.01209 5.11357 5.14137 5.17544 5.18825 5.20965 5.23852 5.26324 5.43262 5.50694 5.52177 5.53484 5.57740 5.64679 6.03620 6.14295 6.28882 6.57765 6.85032 7.39623 7.61774 8.90558 Molecular weight = 347.24amu Principal moments of inertia in cm(-1) A = 0.029650 B = 0.001891 C = 0.001856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.122929 B =14800.933352 C =15085.313454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.460 5.460 3 C 0.220 3.780 4 C -0.082 4.082 5 H 0.150 0.850 6 C -0.144 4.144 7 C -0.107 4.107 8 H 0.086 0.914 9 C -0.035 4.035 10 C -0.140 4.140 11 C -0.141 4.141 12 C -0.147 4.147 13 N -0.325 5.325 14 N -0.345 5.345 15 C 0.342 3.658 16 N -0.458 5.458 17 C 0.084 3.916 18 C 0.076 3.924 19 N -0.549 5.549 20 C 0.211 3.789 21 C -0.525 4.525 22 H 0.062 0.938 23 C 0.004 3.996 24 N -0.932 5.932 25 Si 0.967 3.033 26 H -0.267 1.267 27 H -0.283 1.283 28 H -0.272 1.272 29 C 0.062 3.938 30 C 0.085 3.915 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.116 0.884 34 H 0.134 0.866 35 H 0.087 0.913 36 H 0.046 0.954 37 H 0.066 0.934 38 H 0.057 0.943 39 H 0.062 0.938 40 H 0.065 0.935 41 H 0.044 0.956 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.063 0.937 45 H 0.041 0.959 46 H 0.089 0.911 47 H 0.032 0.968 48 H 0.078 0.922 49 H -0.031 1.031 50 H 0.007 0.993 51 H 0.265 0.735 52 H 0.037 0.963 53 H 0.081 0.919 54 H 0.092 0.908 55 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.178 32.969 -3.125 33.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.152 5.152 3 C -0.048 4.048 4 C -0.103 4.103 5 H 0.168 0.832 6 C -0.181 4.181 7 C -0.127 4.127 8 H 0.104 0.896 9 C -0.035 4.035 10 C -0.197 4.197 11 C -0.198 4.198 12 C -0.204 4.204 13 N -0.165 5.165 14 N -0.189 5.189 15 C -0.016 4.016 16 N -0.184 5.184 17 C -0.043 4.043 18 C -0.053 4.053 19 N -0.274 5.274 20 C 0.085 3.915 21 C -0.563 4.563 22 H 0.080 0.920 23 C -0.194 4.194 24 N -0.572 5.572 25 Si 0.792 3.208 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.197 1.197 29 C -0.067 4.067 30 C -0.042 4.042 31 H 0.113 0.887 32 H 0.113 0.887 33 H 0.134 0.866 34 H 0.152 0.848 35 H 0.106 0.894 36 H 0.065 0.935 37 H 0.085 0.915 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.084 0.916 41 H 0.063 0.937 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.082 0.918 45 H 0.060 0.940 46 H 0.107 0.893 47 H 0.050 0.950 48 H 0.096 0.904 49 H -0.014 1.014 50 H 0.025 0.975 51 H 0.073 0.927 52 H 0.055 0.945 53 H 0.100 0.900 54 H 0.110 0.890 55 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -5.799 32.752 -3.163 33.412 hybrid contribution -0.882 -1.500 0.368 1.778 sum -6.681 31.252 -2.795 32.080 Atomic orbital electron populations 1.22381 0.72618 1.06397 1.05485 1.46321 1.10259 1.04773 1.53838 1.24399 0.86223 0.91448 1.02710 1.20413 1.01689 0.80690 1.07482 0.83241 1.23350 0.97041 0.98796 0.98948 1.22552 1.00764 0.98258 0.91078 0.89551 1.20105 0.93910 0.93301 0.96197 1.21845 1.00973 0.99961 0.96938 1.21870 0.96063 1.00636 1.01205 1.22036 1.02161 0.98695 0.97459 1.73888 1.19234 1.02750 1.20656 1.74581 1.18888 1.04200 1.21220 1.22355 0.85722 0.88867 1.04666 1.59002 1.58816 0.95461 1.05148 1.22135 0.98548 0.93312 0.90330 1.21934 0.97153 0.91793 0.94393 1.62184 1.60046 1.03316 1.01858 1.19345 0.92321 0.83540 0.96333 1.21413 1.25805 0.94476 1.14613 0.92028 1.25868 0.96001 0.98421 0.99151 1.70068 1.36994 1.10099 1.40071 0.85468 0.78847 0.77179 0.79306 1.19156 1.20817 1.19676 1.22112 0.97797 0.92699 0.94108 1.22098 0.98557 0.93160 0.90374 0.88656 0.88664 0.86600 0.84768 0.89449 0.93458 0.91480 0.92433 0.91913 0.91591 0.93719 0.91735 0.91710 0.91775 0.94012 0.89255 0.95009 0.90368 1.01381 0.97479 0.92672 0.94482 0.90044 0.89006 0.93928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.95 11.01 127.77 1.41 2.36 16 2 N -0.46 -10.59 3.21 -538.17 -1.73 -12.31 16 3 C 0.22 5.21 7.59 137.64 1.04 6.26 16 4 C -0.08 -1.18 4.87 -11.51 -0.06 -1.23 16 5 H 0.15 1.27 6.60 -2.39 -0.02 1.25 16 6 C -0.14 -1.91 9.18 30.60 0.28 -1.63 16 7 C -0.11 -1.40 4.86 -10.77 -0.05 -1.46 16 8 H 0.09 1.57 8.11 -2.39 -0.02 1.55 16 9 C -0.04 -0.30 0.88 -52.18 -0.05 -0.35 16 10 C -0.14 -1.26 8.46 71.98 0.61 -0.65 16 11 C -0.14 -1.11 8.31 71.98 0.60 -0.51 16 12 C -0.15 -0.83 7.07 71.98 0.51 -0.32 16 13 N -0.32 -10.42 11.79 -49.54 -0.58 -11.01 16 14 N -0.35 -12.33 12.19 -58.00 -0.71 -13.04 16 15 C 0.34 10.38 6.45 260.11 1.68 12.06 16 16 N -0.46 -14.11 4.70 -705.54 -3.32 -17.43 16 17 C 0.08 2.81 5.53 86.31 0.48 3.29 16 18 C 0.08 2.95 5.43 86.31 0.47 3.42 16 19 N -0.55 -24.07 4.70 -900.28 -4.23 -28.30 16 20 C 0.21 11.20 4.72 85.56 0.40 11.60 16 21 C -0.52 -29.75 8.47 25.60 0.22 -29.53 16 22 H 0.06 3.44 7.13 -2.91 -0.02 3.42 16 23 C 0.00 0.22 5.46 84.65 0.46 0.68 16 24 N -0.93 -55.82 13.29 21.45 0.28 -55.54 16 25 Si 0.97 44.45 29.54 68.60 2.03 46.47 16 26 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 27 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 28 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 29 C 0.06 2.22 5.61 86.31 0.48 2.71 16 30 C 0.09 2.73 5.53 86.31 0.48 3.20 16 31 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.09 1.39 8.12 -2.39 -0.02 1.37 16 33 H 0.12 0.78 7.62 -2.39 -0.02 0.76 16 34 H 0.13 1.09 5.85 -2.39 -0.01 1.07 16 35 H 0.09 1.60 7.92 -2.39 -0.02 1.58 16 36 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 37 H 0.07 0.47 8.14 -2.39 -0.02 0.46 16 38 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 39 H 0.06 0.39 7.29 -2.39 -0.02 0.38 16 40 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 41 H 0.04 0.46 8.14 -2.38 -0.02 0.44 16 42 H 0.06 0.36 6.98 -2.38 -0.02 0.34 16 43 H 0.06 0.30 8.14 -2.39 -0.02 0.28 16 44 H 0.06 0.29 7.08 -2.39 -0.02 0.27 16 45 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 46 H 0.09 2.65 8.13 -2.39 -0.02 2.63 16 47 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 48 H 0.08 3.28 6.79 -2.39 -0.02 3.26 16 49 H -0.03 -1.79 8.12 -2.39 -0.02 -1.81 16 50 H 0.01 0.41 8.03 -2.38 -0.02 0.39 16 51 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 52 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 53 H 0.08 2.89 8.07 -2.39 -0.02 2.87 16 54 H 0.09 2.54 8.13 -2.38 -0.02 2.52 16 55 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -72.21 427.98 1.55 -70.66 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: 0.85 Total: 10.60 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: 8.96 Total: 9.90 kcal Atomic # 7 Polarization: -127.34 SS G_CDS: -10.28 Total: -137.63 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.47 kcal Total: -72.21 1.55 -70.66 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646671297.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.716 kcal (2) G-P(sol) polarization free energy of solvation -72.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds