Wall clock time and date at job start Wed Apr 1 2020 04:51:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 110.72911 * 2 1 4 4 C 1.54943 * 110.66278 * 236.90828 * 2 1 3 5 5 C 1.54604 * 102.91930 * 204.14860 * 4 2 1 6 6 H 1.08998 * 110.38960 * 262.99609 * 5 4 2 7 7 C 1.52998 * 110.30488 * 140.87283 * 5 4 2 8 8 C 1.53988 * 105.13963 * 21.95768 * 5 4 2 9 9 N 1.47908 * 107.05774 * 1.22444 * 8 5 4 10 10 C 1.38587 * 110.99687 * 214.15659 * 9 8 5 11 11 N 1.31215 * 126.47771 * 35.96662 * 10 9 8 12 12 N 1.28524 * 109.86153 * 179.73273 * 11 10 9 13 13 C 1.30287 * 110.05481 * 0.44755 * 12 11 10 14 14 C 1.50699 * 126.35016 * 179.82646 * 13 12 11 15 15 C 1.53114 * 109.52286 * 59.68899 * 14 13 12 16 16 C 1.53041 * 109.28035 * 182.44228 * 15 14 13 17 17 N 1.46856 * 109.51996 * 59.17909 * 16 15 14 18 18 C 1.46902 * 110.99757 * 174.16017 * 17 16 15 19 19 C 1.50696 * 109.46843 * 65.40440 * 18 17 16 20 20 H 1.08005 * 120.00314 * 355.02905 * 19 18 17 21 21 C 1.37877 * 119.99770 * 175.02893 * 19 18 17 22 22 N 1.31518 * 119.99920 * 180.02562 * 21 19 18 23 23 Si 1.86797 * 120.00033 * 359.97438 * 21 19 18 24 24 H 1.48495 * 109.47105 * 90.00368 * 23 21 19 25 25 H 1.48504 * 109.47086 * 209.99945 * 23 21 19 26 26 H 1.48491 * 109.47169 * 330.00097 * 23 21 19 27 27 C 1.46838 * 111.19883 * 298.26058 * 17 16 15 28 28 C 1.53033 * 109.52594 * 61.74160 * 27 17 16 29 29 N 1.36451 * 126.47077 * 215.96742 * 10 9 8 30 30 C 1.46498 * 127.13568 * 359.97438 * 29 10 9 31 31 H 1.09007 * 109.46723 * 298.35520 * 1 2 3 32 32 H 1.08999 * 109.47872 * 58.34759 * 1 2 3 33 33 H 1.08997 * 109.47336 * 178.35862 * 1 2 3 34 34 H 1.08998 * 110.72346 * 85.79241 * 4 2 1 35 35 H 1.08992 * 110.72353 * 322.50802 * 4 2 1 36 36 H 1.08995 * 109.47104 * 302.83219 * 7 5 4 37 37 H 1.09000 * 109.47128 * 62.83415 * 7 5 4 38 38 H 1.09002 * 109.46889 * 182.83178 * 7 5 4 39 39 H 1.09003 * 109.91649 * 241.87155 * 8 5 4 40 40 H 1.08993 * 109.92005 * 120.57715 * 8 5 4 41 41 H 1.08997 * 109.52574 * 179.81646 * 14 13 12 42 42 H 1.09002 * 109.50591 * 62.50167 * 15 14 13 43 43 H 1.08998 * 109.50499 * 302.38318 * 15 14 13 44 44 H 1.08995 * 109.46189 * 299.16374 * 16 15 14 45 45 H 1.09001 * 109.46315 * 179.19080 * 16 15 14 46 46 H 1.09003 * 109.47207 * 305.40796 * 18 17 16 47 47 H 1.09000 * 109.46665 * 185.40356 * 18 17 16 48 48 H 0.97005 * 120.00089 * 179.97438 * 22 21 19 49 49 H 1.08999 * 109.46252 * 181.76032 * 27 17 16 50 50 H 1.09003 * 109.46149 * 301.72480 * 27 17 16 51 51 H 1.09000 * 109.50364 * 180.88061 * 28 27 17 52 52 H 1.08999 * 109.50377 * 60.76589 * 28 27 17 53 53 H 1.08998 * 109.47383 * 266.38749 * 30 29 10 54 54 H 1.08997 * 109.47416 * 26.39057 * 30 29 10 55 55 H 1.09003 * 109.47266 * 146.39047 * 30 29 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9158 1.0195 0.0000 4 6 2.0767 -0.7915 -1.2146 5 6 3.4852 -1.2197 -0.7425 6 1 4.2385 -0.5271 -1.1180 7 6 3.7927 -2.6430 -1.2120 8 6 3.4279 -1.1648 0.7954 9 7 2.0542 -0.7589 1.1641 10 6 2.0579 0.0248 2.3070 11 7 2.9670 0.9092 2.6436 12 7 2.6514 1.4553 3.7634 13 6 1.5366 0.9492 4.2088 14 6 0.8361 1.3208 5.4903 15 6 0.4815 2.8101 5.4664 16 6 -0.1745 3.1948 6.7944 17 7 0.7506 2.9112 7.8991 18 6 0.2098 3.3955 9.1762 19 6 -1.0332 2.6171 9.5227 20 1 -1.4316 1.8966 8.8237 21 6 -1.6618 2.8248 10.7321 22 7 -2.7463 2.1452 11.0348 23 14 -0.9723 4.0705 11.9414 24 1 -1.5777 5.4011 11.6804 25 1 -1.2924 3.6444 13.3275 26 1 0.5010 4.1562 11.7776 27 6 1.0684 1.4795 7.9712 28 6 1.7615 1.0436 6.6783 29 7 1.1168 0.0226 3.2951 30 6 -0.0927 -0.8012 3.3626 31 1 -0.3633 0.4881 0.9044 32 1 -0.3635 0.5393 -0.8747 33 1 -0.3634 -1.0272 -0.0294 34 1 2.1428 -0.1512 -2.0942 35 1 1.4560 -1.6642 -1.4173 36 1 3.0261 -3.3222 -0.8390 37 1 3.8046 -2.6716 -2.3015 38 1 4.7665 -2.9493 -0.8298 39 1 4.1441 -0.4323 1.1677 40 1 3.6486 -2.1481 1.2105 41 1 -0.0750 0.7311 5.5917 42 1 -0.2113 3.0062 4.6480 43 1 1.3884 3.3979 5.3248 44 1 -1.0887 2.6167 6.9288 45 1 -0.4152 4.2579 6.7862 46 1 -0.0368 4.4537 9.0885 47 1 0.9542 3.2596 9.9608 48 1 -3.1884 2.2910 11.8858 49 1 1.7304 1.2966 8.8176 50 1 0.1484 0.9093 8.1001 51 1 1.9832 -0.0226 6.7258 52 1 2.6887 1.6035 6.5558 53 1 -0.9320 -0.2499 2.9386 54 1 0.0614 -1.7200 2.7968 55 1 -0.3076 -1.0468 4.4026 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646673006.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:28 Heat of formation + Delta-G solvation = 65.527742 kcal Electronic energy + Delta-G solvation = -31738.311816 eV Core-core repulsion = 27810.432378 eV Total energy + Delta-G solvation = -3927.879438 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.238 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -44.12972 -40.50842 -39.86817 -36.21574 -35.81208 -34.58817 -33.90663 -32.94827 -31.77350 -30.46900 -28.80587 -28.47705 -27.71378 -26.29576 -25.83655 -23.99111 -23.51836 -22.94393 -21.77950 -21.45037 -21.00135 -20.29853 -18.82928 -18.61644 -17.44803 -17.21953 -17.03727 -16.39928 -15.98250 -15.89045 -15.69124 -15.38943 -15.04035 -14.94996 -14.62582 -14.53637 -14.42200 -14.31128 -14.04417 -13.94571 -13.62191 -13.48185 -13.24225 -13.00584 -12.93263 -12.86669 -12.82648 -12.71038 -12.53287 -12.31881 -12.14488 -12.06611 -11.86660 -11.81348 -11.71829 -11.59552 -11.55292 -11.50935 -11.46143 -11.33119 -11.10457 -10.76870 -10.35020 -9.66639 -8.94528 -8.29571 -6.33603 0.62992 1.19710 1.37224 1.39257 1.50405 1.68781 2.35651 2.66901 3.05660 3.16208 3.32778 3.41775 3.60542 3.63516 3.79131 3.85403 3.92430 4.05072 4.11755 4.15427 4.25888 4.30713 4.31966 4.32977 4.49456 4.55683 4.56829 4.61837 4.62992 4.69223 4.70969 4.75689 4.78582 4.80603 4.90459 4.92832 4.98474 4.98955 5.00155 5.04850 5.07380 5.15516 5.17492 5.17817 5.19494 5.24305 5.26406 5.37924 5.40284 5.49823 5.57570 5.62375 6.12927 6.15197 6.37351 6.47277 6.72585 7.33408 7.64848 8.85988 Molecular weight = 347.24amu Principal moments of inertia in cm(-1) A = 0.028595 B = 0.002074 C = 0.002036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.974166 B =13497.523377 C =13747.632929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.065 3.935 3 H 0.042 0.958 4 C -0.103 4.103 5 C -0.097 4.097 6 H 0.081 0.919 7 C -0.136 4.136 8 C 0.047 3.953 9 N -0.436 5.436 10 C 0.342 3.658 11 N -0.351 5.351 12 N -0.312 5.312 13 C 0.198 3.802 14 C 0.010 3.990 15 C -0.088 4.088 16 C 0.067 3.933 17 N -0.534 5.534 18 C 0.157 3.843 19 C -0.544 4.544 20 H 0.042 0.958 21 C 0.012 3.988 22 N -0.946 5.946 23 Si 0.944 3.056 24 H -0.268 1.268 25 H -0.286 1.286 26 H -0.247 1.247 27 C 0.069 3.931 28 C -0.089 4.089 29 N -0.465 5.465 30 C 0.069 3.931 31 H 0.036 0.964 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.060 0.940 37 H 0.070 0.930 38 H 0.056 0.944 39 H 0.049 0.951 40 H 0.088 0.912 41 H 0.094 0.906 42 H 0.074 0.926 43 H 0.070 0.930 44 H 0.022 0.978 45 H 0.070 0.930 46 H 0.029 0.971 47 H 0.031 0.969 48 H 0.265 0.735 49 H 0.066 0.934 50 H 0.023 0.977 51 H 0.073 0.927 52 H 0.070 0.930 53 H 0.094 0.906 54 H 0.111 0.889 55 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.949 -9.902 -27.153 29.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.042 4.042 3 H 0.060 0.940 4 C -0.141 4.141 5 C -0.117 4.117 6 H 0.100 0.900 7 C -0.194 4.194 8 C -0.080 4.080 9 N -0.162 5.162 10 C -0.016 4.016 11 N -0.195 5.195 12 N -0.152 5.152 13 C -0.071 4.071 14 C -0.011 4.011 15 C -0.127 4.127 16 C -0.062 4.062 17 N -0.257 5.257 18 C 0.029 3.971 19 C -0.583 4.583 20 H 0.060 0.940 21 C -0.186 4.186 22 N -0.586 5.586 23 Si 0.768 3.232 24 H -0.194 1.194 25 H -0.212 1.212 26 H -0.171 1.171 27 C -0.059 4.059 28 C -0.128 4.128 29 N -0.157 5.157 30 C -0.072 4.072 31 H 0.055 0.945 32 H 0.100 0.900 33 H 0.098 0.902 34 H 0.111 0.889 35 H 0.112 0.888 36 H 0.079 0.921 37 H 0.089 0.911 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.106 0.894 41 H 0.112 0.888 42 H 0.093 0.907 43 H 0.089 0.911 44 H 0.040 0.960 45 H 0.088 0.912 46 H 0.047 0.953 47 H 0.050 0.950 48 H 0.074 0.926 49 H 0.085 0.915 50 H 0.042 0.958 51 H 0.091 0.909 52 H 0.089 0.911 53 H 0.112 0.888 54 H 0.130 0.870 55 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 9.161 -9.306 -27.088 30.072 hybrid contribution -1.551 -0.032 1.345 2.053 sum 7.610 -9.338 -25.744 28.423 Atomic orbital electron populations 1.21745 0.92166 1.03501 1.01875 1.23025 0.97091 0.95406 0.88652 0.93978 1.22655 0.95160 1.00516 0.95773 1.21990 0.98111 0.99478 0.92080 0.90048 1.21792 1.01785 0.93952 1.01853 1.23057 0.86334 1.01305 0.97341 1.61741 1.22588 1.32897 0.99008 1.22786 0.88897 0.96871 0.93015 1.74442 1.25271 1.10002 1.09832 1.73923 1.12397 1.22937 1.05914 1.24883 0.94841 0.92021 0.95346 1.19648 0.97258 0.98122 0.86109 1.21480 1.01249 0.93565 0.96400 1.21882 0.93443 1.00587 0.90270 1.62390 1.42960 1.15992 1.04383 1.20090 0.92867 0.95380 0.88721 1.21888 1.10761 1.22984 1.02666 0.94018 1.25858 0.94835 0.97779 1.00137 1.70064 1.20819 1.43506 1.24239 0.85755 0.80419 0.79275 0.77775 1.19360 1.21224 1.17059 1.21831 0.98369 0.88632 0.97083 1.21496 0.98354 1.01057 0.91922 1.46324 1.21416 1.31735 1.16184 1.22398 0.83254 0.95763 1.05833 0.94514 0.90028 0.90165 0.88906 0.88756 0.92098 0.91103 0.92456 0.93210 0.89411 0.88777 0.90732 0.91092 0.95965 0.91176 0.95334 0.95048 0.92618 0.91540 0.95831 0.90860 0.91106 0.88770 0.87037 0.88322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 9.47 71.98 0.68 -1.00 16 2 C 0.07 1.02 2.88 45.26 0.13 1.16 16 3 H 0.04 0.87 7.99 -2.39 -0.02 0.85 16 4 C -0.10 -1.02 6.04 31.80 0.19 -0.83 16 5 C -0.10 -1.12 3.59 -9.91 -0.04 -1.16 16 6 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 7 C -0.14 -1.12 8.89 71.98 0.64 -0.48 16 8 C 0.05 0.83 6.30 86.44 0.54 1.38 16 9 N -0.44 -8.40 5.01 -670.05 -3.36 -11.75 16 10 C 0.34 8.85 6.44 260.11 1.68 10.53 16 11 N -0.35 -11.45 11.06 -58.00 -0.64 -12.10 16 12 N -0.31 -10.74 12.18 -49.54 -0.60 -11.35 16 13 C 0.20 5.75 6.58 137.64 0.91 6.66 16 14 C 0.01 0.28 2.63 -11.46 -0.03 0.25 16 15 C -0.09 -2.69 5.36 30.65 0.16 -2.52 16 16 C 0.07 2.46 5.12 86.33 0.44 2.90 16 17 N -0.53 -21.77 4.86 -900.93 -4.38 -26.14 16 18 C 0.16 7.36 4.22 85.56 0.36 7.72 16 19 C -0.54 -29.87 8.27 25.60 0.21 -29.66 16 20 H 0.04 2.51 6.10 -2.91 -0.02 2.49 16 21 C 0.01 0.68 5.47 84.65 0.46 1.14 16 22 N -0.95 -57.63 13.96 21.45 0.30 -57.33 16 23 Si 0.94 43.44 27.57 68.60 1.89 45.33 16 24 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 25 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 26 H -0.25 -10.67 6.40 99.48 0.64 -10.04 16 27 C 0.07 2.62 5.02 86.33 0.43 3.05 16 28 C -0.09 -2.78 5.36 30.65 0.16 -2.62 16 29 N -0.46 -11.19 3.21 -538.19 -1.73 -12.91 16 30 C 0.07 1.06 10.49 127.77 1.34 2.40 16 31 H 0.04 0.57 7.12 -2.38 -0.02 0.56 16 32 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.08 0.80 8.13 -2.39 -0.02 0.78 16 34 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.09 0.73 7.76 -2.39 -0.02 0.71 16 36 H 0.06 0.51 8.13 -2.39 -0.02 0.49 16 37 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 38 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 39 H 0.05 1.15 6.91 -2.39 -0.02 1.13 16 40 H 0.09 1.47 7.68 -2.39 -0.02 1.45 16 41 H 0.09 2.47 7.04 -2.39 -0.02 2.46 16 42 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 43 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 44 H 0.02 0.91 6.90 -2.39 -0.02 0.89 16 45 H 0.07 2.55 8.07 -2.39 -0.02 2.53 16 46 H 0.03 1.32 7.75 -2.39 -0.02 1.30 16 47 H 0.03 1.48 6.85 -2.39 -0.02 1.47 16 48 H 0.26 15.17 8.31 -92.70 -0.77 14.40 16 49 H 0.07 2.53 8.12 -2.39 -0.02 2.51 16 50 H 0.02 0.99 6.70 -2.39 -0.02 0.98 16 51 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 52 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 53 H 0.09 1.20 7.61 -2.39 -0.02 1.18 16 54 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 55 H 0.10 1.40 7.39 -2.39 -0.02 1.39 16 Total: -1.00 -70.69 416.57 0.55 -70.14 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: 0.78 Total: 17.19 kcal Atomic # 6 Polarization: -9.36 SS G_CDS: 8.29 Total: -1.08 kcal Atomic # 7 Polarization: -121.17 SS G_CDS: -10.41 Total: -131.58 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 1.89 Total: 45.33 kcal Total: -70.69 0.55 -70.14 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646673006.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.664 kcal (2) G-P(sol) polarization free energy of solvation -70.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds