Wall clock time and date at job start Wed Apr 1 2020 04:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.47163 * 2 1 4 4 C 1.53002 * 109.47144 * 120.00086 * 2 1 3 5 5 C 1.52996 * 117.50006 * 3.35046 * 4 2 1 6 6 C 1.53003 * 117.49658 * 294.69094 * 4 2 1 7 7 N 1.46901 * 109.46907 * 240.00018 * 2 1 3 8 8 C 1.46905 * 110.99733 * 175.95346 * 7 2 1 9 9 C 1.38576 * 111.00107 * 51.99810 * 7 2 1 10 10 N 1.31217 * 126.47290 * 59.12086 * 9 7 2 11 11 N 1.28524 * 109.86286 * 179.97438 * 10 9 7 12 12 C 1.30296 * 110.05396 * 359.97438 * 11 10 9 13 13 C 1.50699 * 126.35111 * 179.97438 * 12 11 10 14 14 C 1.53119 * 109.52270 * 59.70685 * 13 12 11 15 15 C 1.53034 * 109.28073 * 182.44109 * 14 13 12 16 16 N 1.46849 * 109.52340 * 59.17803 * 15 14 13 17 17 C 1.46892 * 111.00341 * 174.16077 * 16 15 14 18 18 C 1.50703 * 109.47332 * 294.21323 * 17 16 15 19 19 H 1.08005 * 119.99693 * 359.97438 * 18 17 16 20 20 C 1.37876 * 120.00037 * 179.97438 * 18 17 16 21 21 N 1.31515 * 120.00404 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99960 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47021 * 59.99542 * 22 20 18 24 24 H 1.48501 * 109.47256 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.47006 * 300.00146 * 22 20 18 26 26 C 1.46850 * 111.19775 * 298.26320 * 16 15 14 27 27 C 1.53036 * 109.52747 * 61.73839 * 26 16 15 28 28 N 1.36452 * 126.47313 * 239.09168 * 9 7 2 29 29 C 1.46498 * 127.13817 * 0.02562 * 28 9 7 30 30 H 1.08998 * 109.47402 * 59.99544 * 1 2 3 31 31 H 1.08991 * 109.47566 * 180.02562 * 1 2 3 32 32 H 1.09010 * 109.46957 * 300.00336 * 1 2 3 33 33 H 1.08998 * 115.55140 * 149.02337 * 4 2 1 34 34 H 1.09004 * 117.49763 * 0.02562 * 5 4 2 35 35 H 1.08999 * 117.50276 * 145.01848 * 5 4 2 36 36 H 1.09005 * 117.49654 * 214.97774 * 6 4 2 37 37 H 1.08998 * 117.50056 * 359.97438 * 6 4 2 38 38 H 1.08996 * 109.47059 * 302.56100 * 8 7 2 39 39 H 1.09003 * 109.47379 * 62.56768 * 8 7 2 40 40 H 1.09006 * 109.46697 * 182.56466 * 8 7 2 41 41 H 1.09004 * 109.52620 * 179.89659 * 13 12 11 42 42 H 1.09004 * 109.50366 * 302.38513 * 14 13 12 43 43 H 1.09001 * 109.50076 * 62.49983 * 14 13 12 44 44 H 1.09000 * 109.46228 * 299.16348 * 15 14 13 45 45 H 1.08996 * 109.45490 * 179.18899 * 15 14 13 46 46 H 1.09007 * 109.47163 * 54.20723 * 17 16 15 47 47 H 1.08996 * 109.47831 * 174.20983 * 17 16 15 48 48 H 0.96996 * 120.00040 * 179.97438 * 21 20 18 49 49 H 1.09007 * 109.45848 * 301.72121 * 26 16 15 50 50 H 1.09001 * 109.45529 * 181.75187 * 26 16 15 51 51 H 1.08999 * 109.50117 * 180.88090 * 27 26 16 52 52 H 1.09005 * 109.53196 * 60.77854 * 27 26 16 53 53 H 1.08993 * 109.47388 * 95.23991 * 29 28 9 54 54 H 1.09005 * 109.46819 * 215.24666 * 29 28 9 55 55 H 1.09002 * 109.46818 * 335.24071 * 29 28 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 0.9982 -1.3488 2.1775 6 6 1.7409 -0.0809 2.6062 7 7 2.0196 -0.6925 -1.1995 8 6 3.4849 -0.6288 -1.2828 9 6 1.4341 -0.1765 -2.3446 10 7 1.4962 1.0666 -2.7601 11 7 0.8400 1.1934 -3.8579 12 6 0.3250 0.0481 -4.2054 13 6 -0.5132 -0.2201 -5.4288 14 6 0.2922 0.1210 -6.6856 15 6 -0.5841 -0.0952 -7.9214 16 7 -1.7749 0.7598 -7.8343 17 6 -2.5701 0.6822 -9.0670 18 6 -1.7832 1.2694 -10.2102 19 1 -0.7917 1.6616 -10.0382 20 6 -2.3291 1.3062 -11.4758 21 7 -3.5362 0.8282 -11.6855 22 14 -1.3540 2.0348 -12.8928 23 1 -0.0915 1.2728 -13.0684 24 1 -2.1573 1.9551 -14.1392 25 1 -1.0376 3.4552 -12.5972 26 6 -2.5888 0.4186 -6.6606 27 6 -1.7723 0.6502 -5.3871 28 7 0.6847 -0.8652 -3.2533 29 6 0.3378 -2.2881 -3.2170 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 2.9916 -1.2407 1.1366 34 1 -0.0506 -1.2482 1.8980 35 1 1.2644 -2.2809 2.6758 36 1 2.4957 -0.1794 3.3865 37 1 1.1813 0.8544 2.6090 38 1 3.8039 0.4134 -1.2813 39 1 3.9203 -1.1434 -0.4261 40 1 3.8177 -1.1094 -2.2028 41 1 -0.7980 -1.2720 -5.4519 42 1 0.6100 1.1628 -6.6425 43 1 1.1681 -0.5252 -6.7430 44 1 -0.8902 -1.1401 -7.9713 45 1 -0.0181 0.1607 -8.8171 46 1 -2.8030 -0.3604 -9.2840 47 1 -3.4962 1.2421 -8.9379 48 1 -3.9203 0.8544 -12.5758 49 1 -2.8855 -0.6288 -6.7164 50 1 -3.4788 1.0476 -6.6407 51 1 -2.3715 0.3820 -4.5170 52 1 -1.4870 1.7002 -5.3230 53 1 -0.6425 -2.4115 -2.7567 54 1 0.3146 -2.6825 -4.2329 55 1 1.0834 -2.8290 -2.6342 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646673392.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:57 Heat of formation + Delta-G solvation = 100.611148 kcal Electronic energy + Delta-G solvation = -31466.535970 eV Core-core repulsion = 27540.177863 eV Total energy + Delta-G solvation = -3926.358108 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.238 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -44.10764 -40.20426 -39.74160 -37.11810 -36.13075 -35.50664 -34.08085 -31.80918 -31.57255 -30.71706 -28.85701 -28.38627 -26.48155 -25.92745 -25.71782 -24.04042 -23.50093 -23.19702 -22.19074 -21.75996 -20.57013 -19.92645 -18.44447 -18.27709 -17.95587 -17.08972 -17.01535 -16.76298 -16.33911 -16.00143 -15.81003 -15.58737 -15.14107 -15.08564 -14.76866 -14.58751 -14.39345 -14.23914 -13.93080 -13.79199 -13.72653 -13.39195 -13.32112 -13.06777 -12.86276 -12.77426 -12.68376 -12.60720 -12.53830 -12.19439 -12.15715 -12.08213 -12.01592 -11.95840 -11.74854 -11.54387 -11.39405 -11.25467 -11.15072 -11.04710 -10.94941 -10.58536 -10.01630 -9.88464 -8.94071 -8.18325 -6.27698 0.66782 1.20418 1.41887 1.44969 1.52758 1.73869 2.41799 2.54785 2.99079 3.13557 3.20053 3.32928 3.58689 3.64073 3.84769 3.85632 3.90869 3.98197 4.08227 4.11920 4.16285 4.28691 4.29144 4.30891 4.36852 4.43002 4.44491 4.53717 4.56963 4.62109 4.64964 4.67065 4.71727 4.81029 4.83361 4.84527 4.87351 4.88212 4.98441 5.01851 5.04103 5.12901 5.13536 5.18284 5.22775 5.27829 5.31202 5.35317 5.44669 5.55862 5.65316 5.68197 6.09116 6.20242 6.39708 6.70457 6.88561 7.41719 7.68799 8.92170 Molecular weight = 347.24amu Principal moments of inertia in cm(-1) A = 0.028519 B = 0.001960 C = 0.001917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.566145 B =14282.508538 C =14603.666127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.127 3.873 3 H 0.043 0.957 4 C -0.150 4.150 5 C -0.173 4.173 6 C -0.175 4.175 7 N -0.453 5.453 8 C 0.032 3.968 9 C 0.350 3.650 10 N -0.350 5.350 11 N -0.319 5.319 12 C 0.199 3.801 13 C 0.012 3.988 14 C -0.091 4.091 15 C 0.071 3.929 16 N -0.549 5.549 17 C 0.209 3.791 18 C -0.523 4.523 19 H 0.060 0.940 20 C 0.003 3.997 21 N -0.933 5.933 22 Si 0.966 3.034 23 H -0.267 1.267 24 H -0.282 1.282 25 H -0.272 1.272 26 C 0.058 3.942 27 C -0.088 4.088 28 N -0.463 5.463 29 C 0.069 3.931 30 H 0.023 0.977 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.121 0.879 34 H 0.099 0.901 35 H 0.104 0.896 36 H 0.108 0.892 37 H 0.090 0.910 38 H 0.032 0.968 39 H 0.112 0.888 40 H 0.067 0.933 41 H 0.109 0.891 42 H 0.059 0.941 43 H 0.078 0.922 44 H 0.028 0.972 45 H 0.064 0.936 46 H -0.033 1.033 47 H 0.004 0.996 48 H 0.264 0.736 49 H 0.034 0.966 50 H 0.065 0.935 51 H 0.081 0.919 52 H 0.060 0.940 53 H 0.095 0.905 54 H 0.102 0.898 55 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.339 -11.410 29.559 33.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.019 3.981 3 H 0.061 0.939 4 C -0.169 4.169 5 C -0.210 4.210 6 C -0.212 4.212 7 N -0.179 5.179 8 C -0.114 4.114 9 C -0.007 4.007 10 N -0.194 5.194 11 N -0.158 5.158 12 C -0.070 4.070 13 C -0.009 4.009 14 C -0.129 4.129 15 C -0.057 4.057 16 N -0.274 5.274 17 C 0.082 3.918 18 C -0.561 4.561 19 H 0.079 0.921 20 C -0.195 4.195 21 N -0.573 5.573 22 Si 0.791 3.209 23 H -0.192 1.192 24 H -0.208 1.208 25 H -0.197 1.197 26 C -0.070 4.070 27 C -0.127 4.127 28 N -0.155 5.155 29 C -0.072 4.072 30 H 0.043 0.957 31 H 0.094 0.906 32 H 0.097 0.903 33 H 0.139 0.861 34 H 0.117 0.883 35 H 0.123 0.877 36 H 0.126 0.874 37 H 0.109 0.891 38 H 0.051 0.949 39 H 0.131 0.869 40 H 0.086 0.914 41 H 0.127 0.873 42 H 0.078 0.922 43 H 0.096 0.904 44 H 0.046 0.954 45 H 0.082 0.918 46 H -0.015 1.015 47 H 0.022 0.978 48 H 0.073 0.927 49 H 0.052 0.948 50 H 0.084 0.916 51 H 0.100 0.900 52 H 0.079 0.921 53 H 0.113 0.887 54 H 0.121 0.879 55 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 11.594 -10.030 29.503 33.248 hybrid contribution -0.319 -0.682 -1.319 1.519 sum 11.276 -10.712 28.184 32.190 Atomic orbital electron populations 1.21929 0.94151 1.02665 1.01195 1.21160 0.95308 0.94855 0.86737 0.93883 1.22207 1.01302 1.04395 0.88959 1.23200 0.97898 0.97446 1.02426 1.23078 1.03929 0.97451 0.96792 1.58958 1.08143 1.53855 0.96966 1.22539 0.83181 1.01338 1.04382 1.22423 0.97754 0.87414 0.93120 1.74525 1.20522 1.16266 1.08093 1.73978 1.11907 1.21849 1.08102 1.24878 1.01705 0.85720 0.94679 1.19671 0.92766 1.01723 0.86726 1.21494 0.97282 1.02321 0.91847 1.21879 0.92012 0.93877 0.97970 1.61914 1.08262 1.54056 1.03198 1.19345 0.92445 0.93212 0.86754 1.21446 1.02329 1.39188 0.93179 0.92137 1.25868 0.96061 0.95961 1.01647 1.70068 1.16674 1.47586 1.23012 0.85486 0.78562 0.79062 0.77806 1.19191 1.20779 1.19703 1.22045 0.95990 0.98701 0.90277 1.21454 0.94465 1.00107 0.96680 1.46417 1.38574 1.12206 1.18260 1.22399 1.04108 0.74742 1.05963 0.95739 0.90559 0.90304 0.86097 0.88270 0.87714 0.87376 0.89132 0.94935 0.86947 0.91380 0.87347 0.92194 0.90362 0.95387 0.91779 1.01501 0.97822 0.92725 0.94828 0.91637 0.90000 0.92090 0.88677 0.87918 0.87135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 7.48 71.98 0.54 -1.81 16 2 C 0.13 2.04 2.36 44.91 0.11 2.15 16 3 H 0.04 0.89 8.13 -2.39 -0.02 0.87 16 4 C -0.15 -1.59 5.67 -10.79 -0.06 -1.65 16 5 C -0.17 -1.50 9.50 30.62 0.29 -1.21 16 6 C -0.18 -1.58 9.96 30.62 0.30 -1.28 16 7 N -0.45 -7.88 4.63 -706.79 -3.27 -11.15 16 8 C 0.03 0.47 9.26 127.69 1.18 1.66 16 9 C 0.35 8.38 4.67 260.12 1.21 9.59 16 10 N -0.35 -11.14 12.17 -58.01 -0.71 -11.84 16 11 N -0.32 -10.86 12.18 -49.53 -0.60 -11.47 16 12 C 0.20 5.43 6.58 137.64 0.91 6.34 16 13 C 0.01 0.32 2.63 -11.46 -0.03 0.29 16 14 C -0.09 -2.79 5.36 30.65 0.16 -2.63 16 15 C 0.07 2.68 5.30 86.32 0.46 3.14 16 16 N -0.55 -23.88 4.65 -900.93 -4.19 -28.07 16 17 C 0.21 11.17 4.72 85.56 0.40 11.58 16 18 C -0.52 -30.00 8.43 25.60 0.22 -29.78 16 19 H 0.06 3.43 7.12 -2.91 -0.02 3.41 16 20 C 0.00 0.15 5.46 84.65 0.46 0.62 16 21 N -0.93 -56.31 13.29 21.45 0.28 -56.02 16 22 Si 0.97 44.89 29.54 68.60 2.03 46.92 16 23 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 24 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 25 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 26 C 0.06 2.03 5.46 86.32 0.47 2.50 16 27 C -0.09 -2.57 5.36 30.65 0.16 -2.41 16 28 N -0.46 -9.94 3.21 -538.19 -1.73 -11.67 16 29 C 0.07 0.81 10.82 127.77 1.38 2.19 16 30 H 0.02 0.55 7.03 -2.39 -0.02 0.54 16 31 H 0.08 1.09 7.24 -2.39 -0.02 1.07 16 32 H 0.08 1.10 7.19 -2.38 -0.02 1.08 16 33 H 0.12 1.04 6.28 -2.39 -0.02 1.03 16 34 H 0.10 0.91 5.82 -2.38 -0.01 0.89 16 35 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.11 0.73 8.14 -2.38 -0.02 0.71 16 37 H 0.09 0.91 7.95 -2.39 -0.02 0.89 16 38 H 0.03 0.58 8.13 -2.39 -0.02 0.56 16 39 H 0.11 0.96 6.31 -2.39 -0.02 0.95 16 40 H 0.07 1.02 8.10 -2.38 -0.02 1.00 16 41 H 0.11 2.23 7.08 -2.39 -0.02 2.21 16 42 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 43 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 44 H 0.03 1.00 8.14 -2.39 -0.02 0.99 16 45 H 0.06 2.72 6.70 -2.39 -0.02 2.70 16 46 H -0.03 -1.86 8.12 -2.38 -0.02 -1.88 16 47 H 0.00 0.21 7.99 -2.39 -0.02 0.19 16 48 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 49 H 0.03 1.10 8.14 -2.38 -0.02 1.08 16 50 H 0.07 2.36 8.02 -2.39 -0.02 2.34 16 51 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 52 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 53 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 54 H 0.10 0.94 7.47 -2.38 -0.02 0.92 16 55 H 0.11 1.00 8.11 -2.39 -0.02 0.98 16 Total: -1.00 -73.26 424.38 0.84 -72.41 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: 0.85 Total: 11.61 kcal Atomic # 6 Polarization: -8.89 SS G_CDS: 8.17 Total: -0.72 kcal Atomic # 7 Polarization: -120.02 SS G_CDS: -10.21 Total: -130.23 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -73.26 0.84 -72.41 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646673392.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.026 kcal (2) G-P(sol) polarization free energy of solvation -73.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds