Wall clock time and date at job start Wed Apr 1 2020 05:05:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46900 * 110.99903 * 2 1 4 4 C 1.53000 * 109.47178 * 293.95607 * 3 2 1 5 5 C 1.53005 * 109.47039 * 179.97438 * 4 3 2 6 6 C 1.52999 * 117.49986 * 243.62199 * 5 4 3 7 7 C 1.53000 * 117.49753 * 174.99730 * 5 4 3 8 8 C 1.38581 * 111.00015 * 123.95617 * 2 1 3 9 9 N 1.31224 * 126.47142 * 297.96416 * 8 2 1 10 10 N 1.28526 * 109.85646 * 179.97438 * 9 8 2 11 11 C 1.30297 * 110.05559 * 359.97438 * 10 9 8 12 12 C 1.50697 * 126.34629 * 180.02562 * 11 10 9 13 13 C 1.53122 * 109.52267 * 59.66384 * 12 11 10 14 14 C 1.53041 * 109.27748 * 182.44144 * 13 12 11 15 15 N 1.46848 * 109.52517 * 59.17846 * 14 13 12 16 16 C 1.46896 * 110.99847 * 174.16474 * 15 14 13 17 17 C 1.50704 * 109.46798 * 294.20095 * 16 15 14 18 18 H 1.08000 * 120.00241 * 0.02562 * 17 16 15 19 19 C 1.37873 * 119.99980 * 180.02562 * 17 16 15 20 20 N 1.31519 * 120.00120 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00131 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47112 * 59.99969 * 21 19 17 23 23 H 1.48503 * 109.47150 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.46844 * 299.99965 * 21 19 17 25 25 C 1.46851 * 111.19390 * 298.25456 * 15 14 13 26 26 C 1.53042 * 109.52409 * 61.74738 * 25 15 14 27 27 N 1.36448 * 126.47161 * 117.65185 * 8 2 1 28 28 C 1.46501 * 127.14054 * 0.03322 * 27 8 2 29 29 H 1.08998 * 109.47284 * 65.87260 * 1 2 3 30 30 H 1.09001 * 109.47142 * 305.87342 * 1 2 3 31 31 H 1.08996 * 109.47426 * 185.87297 * 1 2 3 32 32 H 1.09004 * 109.46935 * 53.95559 * 3 2 1 33 33 H 1.08996 * 109.46896 * 173.95706 * 3 2 1 34 34 H 1.09004 * 109.47149 * 299.99821 * 4 3 2 35 35 H 1.08996 * 109.47126 * 60.00240 * 4 3 2 36 36 H 1.09004 * 115.54403 * 29.33195 * 5 4 3 37 37 H 1.08996 * 117.49933 * 359.97438 * 6 5 4 38 38 H 1.08993 * 117.49731 * 145.02161 * 6 5 4 39 39 H 1.09004 * 117.49529 * 214.98206 * 7 5 4 40 40 H 1.09002 * 117.49948 * 0.02562 * 7 5 4 41 41 H 1.09003 * 109.52550 * 179.85021 * 12 11 10 42 42 H 1.09000 * 109.49898 * 302.37808 * 13 12 11 43 43 H 1.08995 * 109.50701 * 62.49608 * 13 12 11 44 44 H 1.08992 * 109.46201 * 299.15731 * 14 13 12 45 45 H 1.08999 * 109.45358 * 179.18715 * 14 13 12 46 46 H 1.08993 * 109.47461 * 54.20670 * 16 15 14 47 47 H 1.08998 * 109.47200 * 174.21196 * 16 15 14 48 48 H 0.96997 * 120.00323 * 179.97438 * 20 19 17 49 49 H 1.09000 * 109.46503 * 301.73063 * 25 15 14 50 50 H 1.08999 * 109.45320 * 181.75130 * 25 15 14 51 51 H 1.08992 * 109.50523 * 180.88163 * 26 25 15 52 52 H 1.09001 * 109.53393 * 60.77607 * 26 25 15 53 53 H 1.08992 * 109.47187 * 95.29020 * 28 27 8 54 54 H 1.08992 * 109.47640 * 215.29408 * 28 27 8 55 55 H 1.09004 * 109.47005 * 335.29286 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0575 -1.3182 5 6 2.1791 3.4861 -1.3179 6 6 1.1660 4.6312 -1.3754 7 6 2.0207 4.3037 -2.6014 8 6 1.9656 -0.7226 1.0731 9 7 1.7832 -0.4554 2.3448 10 7 2.3850 -1.3326 3.0660 11 6 2.9817 -2.2047 2.3036 12 6 3.7923 -3.3882 2.7654 13 6 2.9140 -4.3093 3.6167 14 6 3.7579 -5.4770 4.1328 15 7 4.8749 -4.9591 4.9331 16 6 5.6265 -6.0551 5.5591 17 6 4.7502 -6.7537 6.5667 18 1 3.7362 -6.4174 6.7258 19 6 5.2428 -7.8221 7.2855 20 7 6.4777 -8.2313 7.0923 21 14 4.1564 -8.6885 8.5340 22 1 2.9581 -9.2379 7.8505 23 1 4.9166 -9.7956 9.1679 24 1 3.7312 -7.7202 9.5765 25 6 5.7587 -4.1099 4.1242 26 6 4.9745 -2.9013 3.6079 27 7 2.7317 -1.8498 1.0070 28 6 3.1931 -2.5360 -0.2024 29 1 -0.3634 0.4201 -0.9379 30 1 -0.3633 0.6022 0.8327 31 1 -0.3634 -1.0222 0.1051 32 1 1.5611 1.9273 0.8310 33 1 3.0797 1.3444 0.1082 34 1 2.0658 1.5016 -2.1492 35 1 0.5472 2.0845 -1.4264 36 1 3.0835 3.6427 -0.7298 37 1 0.1093 4.3668 -1.4138 38 1 1.4036 5.5414 -0.8249 39 1 2.8206 4.9985 -2.8575 40 1 1.5259 3.8239 -3.4459 41 1 4.1635 -3.9358 1.8991 42 1 2.5116 -3.7499 4.4612 43 1 2.0939 -4.6932 3.0099 44 1 4.1486 -6.0440 3.2880 45 1 3.1388 -6.1269 4.7512 46 1 5.9379 -6.7658 4.7937 47 1 6.5065 -5.6523 6.0605 48 1 6.8244 -8.9827 7.5982 49 1 6.1400 -4.6833 3.2793 50 1 6.5927 -3.7669 4.7365 51 1 5.6266 -2.2794 2.9947 52 1 4.6046 -2.3192 4.4520 53 1 4.1978 -2.1955 -0.4524 54 1 3.2072 -3.6116 -0.0269 55 1 2.5175 -2.3114 -1.0277 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646674347.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:37 Heat of formation + Delta-G solvation = 90.887298 kcal Electronic energy + Delta-G solvation = -30655.260739 eV Core-core repulsion = 26728.480973 eV Total energy + Delta-G solvation = -3926.779765 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.238 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -44.09449 -39.94446 -39.29392 -37.78560 -36.14777 -35.56233 -34.11898 -31.85440 -31.80136 -30.37595 -28.82981 -28.39833 -27.24106 -25.88646 -24.31411 -24.01752 -23.43231 -23.17835 -21.86091 -21.72754 -21.27558 -20.31187 -18.43514 -18.25273 -17.57793 -17.17281 -17.06588 -16.67785 -16.24983 -15.99704 -15.80837 -15.70220 -15.32990 -15.11605 -14.76260 -14.59022 -14.40753 -14.22518 -14.10291 -13.85731 -13.73335 -13.39187 -13.19054 -13.08675 -12.91268 -12.75249 -12.64650 -12.54469 -12.41241 -12.32082 -12.17672 -12.07098 -12.04946 -12.00098 -11.74455 -11.55231 -11.39357 -11.16703 -11.14956 -11.05892 -10.76302 -10.58230 -10.05801 -9.96020 -8.93685 -8.18083 -6.27540 0.63356 1.19084 1.42173 1.45295 1.53019 1.70869 2.42097 2.61157 2.94167 3.13835 3.19049 3.33124 3.61365 3.70703 3.83668 3.85472 3.92390 4.02064 4.06207 4.09571 4.18427 4.27289 4.30638 4.35479 4.37199 4.44794 4.51624 4.54777 4.57054 4.59529 4.66378 4.69034 4.71886 4.81416 4.82826 4.83735 4.87562 4.96247 5.00272 5.03885 5.07137 5.12927 5.13672 5.18608 5.23045 5.29466 5.35564 5.39281 5.44734 5.54324 5.59827 5.68414 6.09373 6.16364 6.40059 6.70796 6.88805 7.42006 7.65539 8.92411 Molecular weight = 347.24amu Principal moments of inertia in cm(-1) A = 0.028998 B = 0.001739 C = 0.001714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.366192 B =16097.891208 C =16330.613401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.457 5.457 3 C 0.075 3.925 4 C -0.071 4.071 5 C -0.163 4.163 6 C -0.185 4.185 7 C -0.173 4.173 8 C 0.339 3.661 9 N -0.348 5.348 10 N -0.319 5.319 11 C 0.201 3.799 12 C 0.012 3.988 13 C -0.091 4.091 14 C 0.071 3.929 15 N -0.549 5.549 16 C 0.209 3.791 17 C -0.524 4.524 18 H 0.061 0.939 19 C 0.004 3.996 20 N -0.933 5.933 21 Si 0.966 3.034 22 H -0.267 1.267 23 H -0.282 1.282 24 H -0.272 1.272 25 C 0.058 3.942 26 C -0.089 4.089 27 N -0.463 5.463 28 C 0.069 3.931 29 H 0.113 0.887 30 H 0.035 0.965 31 H 0.064 0.936 32 H 0.040 0.960 33 H 0.065 0.935 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.092 0.908 39 H 0.097 0.903 40 H 0.103 0.897 41 H 0.110 0.890 42 H 0.059 0.941 43 H 0.078 0.922 44 H 0.028 0.972 45 H 0.064 0.936 46 H -0.033 1.033 47 H 0.004 0.996 48 H 0.264 0.736 49 H 0.034 0.966 50 H 0.065 0.935 51 H 0.082 0.918 52 H 0.061 0.939 53 H 0.096 0.904 54 H 0.103 0.897 55 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.053 20.266 -25.961 34.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.183 5.183 3 C -0.052 4.052 4 C -0.108 4.108 5 C -0.182 4.182 6 C -0.222 4.222 7 C -0.210 4.210 8 C -0.018 4.018 9 N -0.192 5.192 10 N -0.159 5.159 11 C -0.068 4.068 12 C -0.009 4.009 13 C -0.130 4.130 14 C -0.057 4.057 15 N -0.274 5.274 16 C 0.082 3.918 17 C -0.563 4.563 18 H 0.079 0.921 19 C -0.194 4.194 20 N -0.573 5.573 21 Si 0.791 3.209 22 H -0.192 1.192 23 H -0.208 1.208 24 H -0.197 1.197 25 C -0.070 4.070 26 C -0.128 4.128 27 N -0.155 5.155 28 C -0.072 4.072 29 H 0.131 0.869 30 H 0.053 0.947 31 H 0.082 0.918 32 H 0.058 0.942 33 H 0.084 0.916 34 H 0.101 0.899 35 H 0.097 0.903 36 H 0.116 0.884 37 H 0.118 0.882 38 H 0.111 0.889 39 H 0.115 0.885 40 H 0.121 0.879 41 H 0.128 0.872 42 H 0.078 0.922 43 H 0.097 0.903 44 H 0.046 0.954 45 H 0.082 0.918 46 H -0.015 1.015 47 H 0.022 0.978 48 H 0.073 0.927 49 H 0.052 0.948 50 H 0.084 0.916 51 H 0.101 0.899 52 H 0.079 0.921 53 H 0.114 0.886 54 H 0.122 0.878 55 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -10.450 20.893 -24.773 34.050 hybrid contribution 0.460 -1.341 0.093 1.421 sum -9.991 19.552 -24.680 33.033 Atomic orbital electron populations 1.22538 0.82837 1.02586 1.03368 1.58934 1.10412 1.14774 1.34177 1.22163 0.99568 0.84509 0.98973 1.21077 1.01517 0.92548 0.95682 1.22239 1.01153 0.92296 1.02514 1.23125 0.97298 0.99531 1.02243 1.23029 1.03038 1.03029 0.91909 1.22604 0.97763 0.90272 0.91181 1.74529 1.21739 1.21964 1.00974 1.73982 1.11727 1.02871 1.27314 1.24923 1.01768 1.00050 0.80084 1.19687 0.93328 0.88778 0.99118 1.21500 0.97123 0.95380 0.98978 1.21879 0.93149 0.95681 0.95035 1.61920 1.11177 1.22084 1.32219 1.19343 0.92811 0.87097 0.92499 1.21457 0.99528 1.13826 1.21444 0.92119 1.25857 0.96474 0.97865 0.99236 1.70069 1.16541 1.27741 1.42992 0.85489 0.78660 0.77858 0.78927 1.19184 1.20774 1.19726 1.22046 0.95220 0.94148 0.95609 1.21463 0.95366 0.96858 0.99092 1.46438 1.38808 1.21457 1.08776 1.22420 1.02658 0.98492 0.83655 0.86896 0.94659 0.91757 0.94182 0.91647 0.89914 0.90349 0.88414 0.88224 0.88922 0.88475 0.87902 0.87249 0.92172 0.90324 0.95360 0.91767 1.01485 0.97827 0.92730 0.94802 0.91622 0.89939 0.92052 0.88590 0.87850 0.87014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 9.17 127.69 1.17 1.65 16 2 N -0.46 -7.76 4.75 -730.93 -3.47 -11.23 16 3 C 0.07 1.16 4.84 86.30 0.42 1.57 16 4 C -0.07 -0.69 5.42 30.60 0.17 -0.52 16 5 C -0.16 -1.68 5.74 -10.79 -0.06 -1.74 16 6 C -0.19 -1.75 10.18 30.60 0.31 -1.44 16 7 C -0.17 -1.45 10.25 30.60 0.31 -1.13 16 8 C 0.34 8.17 6.36 260.11 1.65 9.83 16 9 N -0.35 -11.10 12.19 -58.00 -0.71 -11.81 16 10 N -0.32 -10.90 12.18 -49.54 -0.60 -11.50 16 11 C 0.20 5.48 6.58 137.64 0.91 6.39 16 12 C 0.01 0.31 2.63 -11.46 -0.03 0.28 16 13 C -0.09 -2.79 5.36 30.65 0.16 -2.63 16 14 C 0.07 2.67 5.29 86.33 0.46 3.12 16 15 N -0.55 -23.79 4.65 -900.93 -4.19 -27.97 16 16 C 0.21 11.15 4.72 85.56 0.40 11.56 16 17 C -0.52 -30.03 8.43 25.60 0.22 -29.81 16 18 H 0.06 3.44 7.12 -2.91 -0.02 3.42 16 19 C 0.00 0.21 5.46 84.65 0.46 0.68 16 20 N -0.93 -56.23 13.29 21.45 0.28 -55.95 16 21 Si 0.97 44.81 29.54 68.60 2.03 46.83 16 22 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 23 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 24 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 25 C 0.06 2.02 5.46 86.33 0.47 2.49 16 26 C -0.09 -2.58 5.36 30.65 0.16 -2.42 16 27 N -0.46 -9.98 3.21 -538.20 -1.73 -11.71 16 28 C 0.07 0.79 10.81 127.77 1.38 2.17 16 29 H 0.11 0.89 6.76 -2.39 -0.02 0.88 16 30 H 0.03 0.60 8.06 -2.39 -0.02 0.58 16 31 H 0.06 0.98 8.06 -2.39 -0.02 0.96 16 32 H 0.04 0.76 8.06 -2.39 -0.02 0.74 16 33 H 0.06 1.14 8.05 -2.39 -0.02 1.12 16 34 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.08 0.63 6.41 -2.39 -0.02 0.61 16 36 H 0.10 1.14 8.07 -2.39 -0.02 1.12 16 37 H 0.10 0.83 8.03 -2.39 -0.02 0.81 16 38 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.11 2.22 7.09 -2.39 -0.02 2.21 16 42 H 0.06 2.14 8.14 -2.39 -0.02 2.13 16 43 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 44 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 45 H 0.06 2.71 6.70 -2.39 -0.02 2.70 16 46 H -0.03 -1.85 8.12 -2.39 -0.02 -1.87 16 47 H 0.00 0.21 7.99 -2.39 -0.02 0.19 16 48 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 49 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 50 H 0.07 2.36 8.02 -2.39 -0.02 2.34 16 51 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 52 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 53 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 54 H 0.10 0.92 7.48 -2.39 -0.02 0.90 16 55 H 0.11 0.96 8.11 -2.39 -0.02 0.94 16 Total: -1.00 -73.26 433.17 1.02 -72.24 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: 0.84 Total: 11.07 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: 8.57 Total: 0.04 kcal Atomic # 7 Polarization: -119.77 SS G_CDS: -10.41 Total: -130.18 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.83 kcal Total: -73.26 1.02 -72.24 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646674347.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.124 kcal (2) G-P(sol) polarization free energy of solvation -73.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds