Wall clock time and date at job start Wed Apr 1 2020 05:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46501 * 109.47133 * 2 1 4 4 C 1.36741 * 127.14086 * 88.26739 * 3 2 1 5 5 C 1.50696 * 126.34222 * 0.02562 * 4 3 2 6 6 C 1.53117 * 109.52314 * 239.68399 * 5 4 3 7 7 C 1.53038 * 109.27994 * 182.44132 * 6 5 4 8 8 N 1.46850 * 109.52133 * 59.18360 * 7 6 5 9 9 C 1.46901 * 111.00043 * 174.16182 * 8 7 6 10 10 C 1.46843 * 111.19531 * 298.25495 * 8 7 6 11 11 C 1.53038 * 109.52639 * 61.74487 * 10 8 7 12 12 N 1.30286 * 107.30475 * 179.97438 * 4 3 2 13 13 N 1.28527 * 110.05817 * 359.97438 * 12 4 3 14 14 C 1.31221 * 109.85852 * 359.74705 * 13 12 4 15 15 N 1.38576 * 126.47250 * 180.25759 * 14 13 12 16 16 C 1.46846 * 111.00230 * 63.09179 * 15 14 13 17 17 C 1.53029 * 109.52515 * 174.15879 * 16 15 14 18 18 C 1.53118 * 109.27815 * 59.18243 * 17 16 15 19 19 C 1.50697 * 109.52224 * 182.43978 * 18 17 16 20 20 H 1.08004 * 120.00394 * 119.68106 * 19 18 17 21 21 C 1.37873 * 120.00419 * 299.68128 * 19 18 17 22 22 N 1.31515 * 119.99718 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00287 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47317 * 60.00025 * 23 21 19 25 25 H 1.48507 * 109.47160 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.46939 * 299.99657 * 23 21 19 27 27 C 1.53118 * 109.15915 * 302.34305 * 18 17 16 28 28 C 1.46851 * 110.99950 * 298.88199 * 15 14 13 29 29 H 1.09003 * 109.47307 * 300.00067 * 1 2 3 30 30 H 1.08995 * 109.47589 * 60.00148 * 1 2 3 31 31 H 1.08998 * 109.47178 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47471 * 119.99858 * 2 1 3 33 33 H 1.09003 * 109.47307 * 239.99933 * 2 1 3 34 34 H 1.09000 * 109.52529 * 359.87389 * 5 4 3 35 35 H 1.09001 * 109.50568 * 302.38606 * 6 5 4 36 36 H 1.09002 * 109.50271 * 62.50148 * 6 5 4 37 37 H 1.09002 * 109.46545 * 299.16292 * 7 6 5 38 38 H 1.09000 * 109.46242 * 179.19573 * 7 6 5 39 39 H 1.08998 * 109.47120 * 184.20934 * 9 8 7 40 40 H 1.08998 * 109.46791 * 304.20587 * 9 8 7 41 41 H 1.08999 * 109.47109 * 64.20558 * 9 8 7 42 42 H 1.09005 * 109.46355 * 301.72717 * 10 8 7 43 43 H 1.09001 * 109.46567 * 181.76374 * 10 8 7 44 44 H 1.09000 * 109.50460 * 180.87881 * 11 10 8 45 45 H 1.09001 * 109.50325 * 60.75766 * 11 10 8 46 46 H 1.08998 * 109.46402 * 294.18034 * 16 15 14 47 47 H 1.09001 * 109.46135 * 54.14162 * 16 15 14 48 48 H 1.09001 * 109.50434 * 299.23628 * 17 16 15 49 49 H 1.09009 * 109.50427 * 179.11816 * 17 16 15 50 50 H 1.09001 * 109.52477 * 62.24805 * 18 17 16 51 51 H 0.97002 * 120.00015 * 179.97438 * 22 21 19 52 52 H 1.09003 * 109.50280 * 297.71241 * 27 18 17 53 53 H 1.09002 * 109.50432 * 177.59594 * 27 18 17 54 54 H 1.08993 * 109.45836 * 305.85255 * 28 15 14 55 55 H 1.08998 * 109.46399 * 65.82494 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.1706 1.0895 5 6 2.0789 1.7811 2.5337 6 6 1.0692 2.7241 3.1937 7 6 0.9328 2.3621 4.6744 8 7 2.2411 2.4799 5.3309 9 6 2.1230 2.2744 6.7806 10 6 3.2146 1.5496 4.7451 11 6 3.4192 1.8872 3.2666 12 7 2.6840 3.3214 0.6477 13 7 2.7232 3.3129 -0.6370 14 6 2.3304 2.1446 -1.0872 15 7 2.2451 1.7599 -2.4157 16 6 3.5684 1.7693 -3.0524 17 6 3.4582 1.2025 -4.4695 18 6 2.4756 2.0531 -5.2792 19 6 2.3172 1.4646 -6.6575 20 1 1.3463 1.1327 -6.9947 21 6 3.4116 1.3498 -7.4881 22 7 4.5938 1.7543 -7.0777 23 14 3.2151 0.6210 -9.1968 24 1 2.2564 1.4428 -9.9782 25 1 4.5316 0.6081 -9.8839 26 1 2.7013 -0.7679 -9.0864 27 6 1.1189 2.0662 -4.5694 28 6 1.2969 2.6081 -3.1493 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.7127 0.7560 2.5908 35 1 1.4174 3.7528 3.1011 36 1 0.1011 2.6215 2.7034 37 1 0.5712 1.3379 4.7661 38 1 0.2251 3.0409 5.1505 39 1 3.0920 2.4406 7.2513 40 1 1.3957 2.9761 7.1889 41 1 1.7937 1.2542 6.9774 42 1 2.8424 0.5292 4.8366 43 1 4.1644 1.6381 5.2726 44 1 4.1301 1.1868 2.8283 45 1 3.8045 2.9028 3.1751 46 1 3.9420 2.7922 -3.0983 47 1 4.2564 1.1575 -2.4689 48 1 3.0977 0.1748 -4.4234 49 1 4.4377 1.2241 -4.9474 50 1 2.8551 3.0718 -5.3585 51 1 5.3639 1.6732 -7.6619 52 1 0.7217 1.0521 -4.5249 53 1 0.4271 2.7049 -5.1185 54 1 0.3352 2.6053 -2.6363 55 1 1.6812 3.6271 -3.1949 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646702776.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:31 Heat of formation + Delta-G solvation = 59.346493 kcal Electronic energy + Delta-G solvation = -31949.765660 eV Core-core repulsion = 28021.618183 eV Total energy + Delta-G solvation = -3928.147477 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.238 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -44.09149 -40.14783 -39.71569 -36.72813 -36.00526 -35.01318 -33.26516 -31.86474 -31.68752 -31.49026 -30.32395 -27.91688 -27.20724 -25.11278 -24.53684 -24.15418 -24.07951 -23.88214 -22.28549 -21.54423 -20.67339 -20.11950 -18.56916 -18.27019 -17.47262 -17.05911 -16.89064 -16.51466 -16.01228 -16.00170 -15.69450 -15.47522 -15.11150 -14.97086 -14.66352 -14.62452 -14.46051 -14.26010 -14.15543 -13.98087 -13.39246 -13.36620 -13.25891 -13.16481 -12.95180 -12.75507 -12.59148 -12.47550 -12.45174 -12.40453 -12.15101 -12.14178 -12.00479 -11.95881 -11.66251 -11.58357 -11.54092 -11.36854 -11.10392 -10.92663 -10.76135 -10.39941 -10.00584 -9.83449 -9.21020 -8.06671 -6.20097 0.66045 1.22229 1.44407 1.45239 1.52797 1.74061 2.45487 2.70341 3.01919 3.19763 3.20847 3.57119 3.74448 3.80536 3.85192 4.02231 4.05291 4.11395 4.17081 4.18686 4.30752 4.38576 4.39237 4.42443 4.43861 4.49461 4.55568 4.60221 4.61612 4.63296 4.68333 4.74333 4.75649 4.85378 4.88547 4.89222 4.97287 4.97675 5.05527 5.10185 5.12729 5.17906 5.18708 5.21156 5.22630 5.40245 5.48008 5.58647 5.68696 5.73003 5.98922 6.12948 6.17269 6.18315 6.29867 6.38553 6.90891 7.47999 7.68977 8.98270 Molecular weight = 347.24amu Principal moments of inertia in cm(-1) A = 0.028715 B = 0.002152 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.850835 B =13008.302126 C =13242.707119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.097 3.903 3 N -0.458 5.458 4 C 0.195 3.805 5 C 0.011 3.989 6 C -0.101 4.101 7 C 0.064 3.936 8 N -0.565 5.565 9 C 0.027 3.973 10 C 0.064 3.936 11 C -0.103 4.103 12 N -0.321 5.321 13 N -0.354 5.354 14 C 0.344 3.656 15 N -0.453 5.453 16 C 0.085 3.915 17 C -0.088 4.088 18 C 0.043 3.957 19 C -0.529 4.529 20 H 0.057 0.943 21 C 0.011 3.989 22 N -0.919 5.919 23 Si 0.954 3.046 24 H -0.273 1.273 25 H -0.288 1.288 26 H -0.269 1.269 27 C -0.093 4.093 28 C 0.083 3.917 29 H 0.066 0.934 30 H 0.044 0.956 31 H 0.105 0.895 32 H 0.123 0.877 33 H 0.097 0.903 34 H 0.111 0.889 35 H 0.059 0.941 36 H 0.073 0.927 37 H 0.050 0.950 38 H 0.085 0.915 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.033 0.967 42 H 0.050 0.950 43 H 0.084 0.916 44 H 0.071 0.929 45 H 0.059 0.941 46 H 0.020 0.980 47 H 0.066 0.934 48 H 0.046 0.954 49 H 0.069 0.931 50 H -0.013 1.013 51 H 0.260 0.740 52 H 0.066 0.934 53 H 0.063 0.937 54 H 0.079 0.921 55 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.697 -7.363 27.694 29.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.023 4.023 3 N -0.150 5.150 4 C -0.074 4.074 5 C -0.010 4.010 6 C -0.139 4.139 7 C -0.064 4.064 8 N -0.290 5.290 9 C -0.121 4.121 10 C -0.063 4.063 11 C -0.142 4.142 12 N -0.160 5.160 13 N -0.197 5.197 14 C -0.013 4.013 15 N -0.179 5.179 16 C -0.042 4.042 17 C -0.127 4.127 18 C 0.024 3.976 19 C -0.567 4.567 20 H 0.075 0.925 21 C -0.187 4.187 22 N -0.558 5.558 23 Si 0.780 3.220 24 H -0.199 1.199 25 H -0.213 1.213 26 H -0.194 1.194 27 C -0.130 4.130 28 C -0.044 4.044 29 H 0.085 0.915 30 H 0.063 0.937 31 H 0.123 0.877 32 H 0.141 0.859 33 H 0.115 0.885 34 H 0.129 0.871 35 H 0.078 0.922 36 H 0.091 0.909 37 H 0.068 0.932 38 H 0.104 0.896 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.052 0.948 42 H 0.068 0.932 43 H 0.103 0.897 44 H 0.089 0.911 45 H 0.078 0.922 46 H 0.038 0.962 47 H 0.084 0.916 48 H 0.064 0.936 49 H 0.087 0.913 50 H 0.005 0.995 51 H 0.069 0.931 52 H 0.085 0.915 53 H 0.082 0.918 54 H 0.098 0.902 55 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -8.037 -5.965 27.515 29.279 hybrid contribution 0.032 -1.113 -1.452 1.830 sum -8.005 -7.078 26.063 28.168 Atomic orbital electron populations 1.22085 0.92480 1.04750 1.02329 1.22221 0.96944 0.76997 1.06185 1.46685 1.48604 1.14884 1.04871 1.25322 1.01419 0.88201 0.92444 1.19822 0.98279 1.01206 0.81662 1.21545 0.97994 0.99209 0.95191 1.22052 0.90560 1.00814 0.92960 1.61877 1.09142 1.53292 1.04675 1.22365 1.02911 1.00207 0.86612 1.22037 0.96806 0.94022 0.93479 1.21568 0.95083 1.02642 0.94917 1.73884 1.19673 1.19862 1.02626 1.74599 1.21630 1.19107 1.04398 1.22548 1.01617 0.87867 0.89285 1.58875 1.11469 1.52363 0.95202 1.22064 0.86788 0.98950 0.96358 1.21444 1.02342 0.98338 0.90553 1.18675 0.91667 0.93850 0.93391 1.21487 0.94517 1.40834 0.99818 0.92463 1.25759 0.95124 0.95913 1.01919 1.70011 0.99882 1.48297 1.37650 0.85671 0.77028 0.79212 0.80077 1.19859 1.21348 1.19364 1.21550 0.98611 1.00833 0.92049 1.22052 0.94187 0.93340 0.94840 0.91478 0.93685 0.87653 0.85931 0.88459 0.87130 0.92241 0.90860 0.93158 0.89621 0.91021 0.90885 0.94796 0.93161 0.89738 0.91053 0.92234 0.96204 0.91578 0.93562 0.91305 0.99487 0.93099 0.91524 0.91791 0.90250 0.95618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.27 10.24 71.98 0.74 -1.53 16 2 C 0.10 1.70 6.57 86.38 0.57 2.27 16 3 N -0.46 -12.24 2.81 -514.86 -1.45 -13.68 16 4 C 0.19 5.18 6.58 137.64 0.91 6.08 16 5 C 0.01 0.19 2.62 -11.46 -0.03 0.16 16 6 C -0.10 -1.65 5.36 30.65 0.16 -1.49 16 7 C 0.06 0.76 5.46 86.33 0.47 1.23 16 8 N -0.56 -7.67 4.91 -922.58 -4.53 -12.20 16 9 C 0.03 0.25 9.59 127.69 1.22 1.47 16 10 C 0.06 0.80 5.46 86.33 0.47 1.27 16 11 C -0.10 -1.76 5.36 30.65 0.16 -1.60 16 12 N -0.32 -11.48 12.18 -49.54 -0.60 -12.08 16 13 N -0.35 -14.29 12.19 -58.00 -0.71 -14.99 16 14 C 0.34 12.19 6.41 260.11 1.67 13.86 16 15 N -0.45 -16.74 4.67 -706.17 -3.30 -20.03 16 16 C 0.09 3.57 5.39 86.32 0.47 4.04 16 17 C -0.09 -4.18 5.12 30.64 0.16 -4.03 16 18 C 0.04 2.14 2.16 -11.46 -0.02 2.12 16 19 C -0.53 -28.70 8.56 25.60 0.22 -28.48 16 20 H 0.06 3.01 7.74 -2.91 -0.02 2.99 16 21 C 0.01 0.62 5.31 84.65 0.45 1.07 16 22 N -0.92 -53.22 11.37 21.45 0.24 -52.97 16 23 Si 0.95 43.30 29.54 68.60 2.03 45.33 16 24 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 25 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 26 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 27 C -0.09 -3.78 5.32 30.65 0.16 -3.61 16 28 C 0.08 3.12 5.37 86.33 0.46 3.58 16 29 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.12 1.29 7.31 -2.38 -0.02 1.27 16 33 H 0.10 1.92 8.14 -2.39 -0.02 1.91 16 34 H 0.11 1.25 6.99 -2.39 -0.02 1.24 16 35 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 38 H 0.09 0.92 8.09 -2.39 -0.02 0.90 16 39 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.07 0.61 8.09 -2.39 -0.02 0.59 16 41 H 0.03 0.25 8.14 -2.39 -0.02 0.23 16 42 H 0.05 0.47 8.14 -2.38 -0.02 0.45 16 43 H 0.08 0.97 8.12 -2.39 -0.02 0.95 16 44 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 46 H 0.02 0.91 8.14 -2.39 -0.02 0.90 16 47 H 0.07 2.58 8.10 -2.39 -0.02 2.56 16 48 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 49 H 0.07 3.70 6.18 -2.38 -0.01 3.68 16 50 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 51 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 52 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 53 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 54 H 0.08 2.64 8.10 -2.39 -0.02 2.62 16 55 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -69.64 423.48 0.76 -68.88 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: 0.83 Total: 15.33 kcal Atomic # 6 Polarization: -11.82 SS G_CDS: 8.24 Total: -3.58 kcal Atomic # 7 Polarization: -115.62 SS G_CDS: -10.34 Total: -125.96 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -69.64 0.76 -68.88 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646702776.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.230 kcal (2) G-P(sol) polarization free energy of solvation -69.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds