Wall clock time and date at job start Wed Apr 1 2020 04:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36458 * 127.13931 * 2 1 4 4 N 1.38586 * 126.46651 * 0.02562 * 3 2 1 5 5 C 1.46841 * 111.00135 * 69.72718 * 4 3 2 6 6 C 1.53035 * 109.52309 * 174.15579 * 5 4 3 7 7 C 1.53118 * 109.27769 * 59.18095 * 6 5 4 8 8 C 1.53124 * 109.15803 * 302.34370 * 7 6 5 9 9 H 1.09001 * 109.50177 * 297.70991 * 8 7 6 10 10 N 1.46907 * 109.50186 * 177.59558 * 8 7 6 11 11 C 1.48535 * 110.99843 * 60.24476 * 10 8 7 12 12 C 1.54934 * 103.22304 * 159.72120 * 11 10 8 13 13 C 1.54601 * 102.92477 * 322.58354 * 12 11 10 14 14 C 1.47901 * 110.99816 * 177.64334 * 10 8 7 15 15 C 1.46842 * 111.00022 * 305.51117 * 4 3 2 16 16 N 1.31210 * 107.05663 * 180.02562 * 3 2 1 17 17 N 1.28532 * 109.86107 * 0.02562 * 16 3 2 18 18 C 1.30288 * 110.05075 * 359.71782 * 17 16 3 19 19 C 1.50706 * 126.34943 * 180.31136 * 18 17 16 20 20 C 1.52994 * 109.47001 * 114.34745 * 19 18 17 21 21 C 1.53000 * 109.47074 * 234.35373 * 19 18 17 22 22 C 1.50707 * 109.46822 * 354.35027 * 19 18 17 23 23 H 1.08004 * 119.99457 * 359.97438 * 22 19 18 24 24 C 1.37872 * 119.99930 * 180.02562 * 22 19 18 25 25 N 1.31512 * 120.00401 * 359.97438 * 24 22 19 26 26 Si 1.86801 * 119.99964 * 180.02562 * 24 22 19 27 27 H 1.48509 * 109.46969 * 359.97438 * 26 24 22 28 28 H 1.48494 * 109.47429 * 119.99604 * 26 24 22 29 29 H 1.48493 * 109.47156 * 239.99974 * 26 24 22 30 30 H 1.09001 * 109.47423 * 85.05366 * 1 2 3 31 31 H 1.08999 * 109.47250 * 325.05487 * 1 2 3 32 32 H 1.09001 * 109.46765 * 205.05629 * 1 2 3 33 33 H 1.08998 * 109.46505 * 294.17183 * 5 4 3 34 34 H 1.09000 * 109.46783 * 54.15132 * 5 4 3 35 35 H 1.09005 * 109.50663 * 179.11615 * 6 5 4 36 36 H 1.08992 * 109.50859 * 299.19681 * 6 5 4 37 37 H 1.09006 * 109.52664 * 62.24716 * 7 6 5 38 38 H 1.09001 * 109.52582 * 182.37872 * 7 6 5 39 39 H 1.08996 * 110.66592 * 278.15391 * 11 10 8 40 40 H 1.08995 * 110.66706 * 41.28420 * 11 10 8 41 41 H 1.09007 * 110.72534 * 204.22642 * 12 11 10 42 42 H 1.09000 * 110.72688 * 80.94597 * 12 11 10 43 43 H 1.08991 * 110.30618 * 263.04584 * 13 12 11 44 44 H 1.08996 * 110.38965 * 140.91432 * 13 12 11 45 45 H 1.08999 * 109.91791 * 333.50681 * 14 10 8 46 46 H 1.08993 * 109.91963 * 94.60749 * 14 10 8 47 47 H 1.08996 * 109.46688 * 305.85763 * 15 4 3 48 48 H 1.08999 * 109.45972 * 65.82848 * 15 4 3 49 49 H 1.09000 * 109.47247 * 64.95711 * 20 19 18 50 50 H 1.09006 * 109.47068 * 184.95108 * 20 19 18 51 51 H 1.08999 * 109.47761 * 304.95110 * 20 19 18 52 52 H 1.09001 * 109.47451 * 59.99916 * 21 19 18 53 53 H 1.09005 * 109.46456 * 179.97438 * 21 19 18 54 54 H 1.08992 * 109.46899 * 299.99282 * 21 19 18 55 55 H 0.96995 * 120.00328 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2888 1.0878 0.0000 4 7 1.8977 2.4173 0.0005 5 6 1.2939 2.7878 1.2868 6 6 1.0085 4.2912 1.3036 7 6 0.0587 4.6383 0.1539 8 6 0.6902 4.1984 -1.1698 9 1 1.6189 4.7461 -1.3297 10 7 -0.2397 4.4757 -2.2729 11 6 -0.5481 5.9262 -2.3571 12 6 -1.0636 6.0952 -3.8084 13 6 -0.1625 5.1282 -4.6103 14 6 0.3605 4.1146 -3.5755 15 6 0.9848 2.6977 -1.1150 16 7 3.5211 0.6373 -0.0006 17 7 3.5162 -0.6481 -0.0014 18 6 2.2906 -1.0900 0.0045 19 6 1.8620 -2.5348 0.0123 20 6 1.1512 -2.8489 1.3302 21 6 0.9072 -2.7899 -1.1557 22 6 3.0744 -3.4191 -0.1277 23 1 4.0568 -2.9787 -0.2141 24 6 2.9293 -4.7900 -0.1465 25 7 1.7330 -5.3262 -0.0418 26 14 4.4321 -5.8860 -0.3193 27 1 5.6507 -5.0431 -0.4184 28 1 4.5377 -6.7720 0.8677 29 1 4.3025 -6.7140 -1.5451 30 1 -0.3634 0.0886 -1.0238 31 1 -0.3634 0.8424 0.5886 32 1 -0.3633 -0.9310 0.4352 33 1 0.3615 2.2396 1.4216 34 1 1.9812 2.5397 2.0955 35 1 0.5460 4.5632 2.2525 36 1 1.9423 4.8403 1.1834 37 1 -0.8895 4.1195 0.2954 38 1 -0.1140 5.7144 0.1363 39 1 -1.3227 6.1971 -1.6398 40 1 0.3512 6.5207 -2.1966 41 1 -0.9271 7.1216 -4.1492 42 1 -2.1099 5.7988 -3.8831 43 1 0.6680 5.6712 -5.0611 44 1 -0.7425 4.6183 -5.3794 45 1 1.4470 4.1748 -3.5131 46 1 0.0602 3.1051 -3.8557 47 1 1.4476 2.3841 -2.0507 48 1 0.0539 2.1499 -0.9689 49 1 0.2277 -2.2732 1.3911 50 1 0.9194 -3.9131 1.3734 51 1 1.8001 -2.5842 2.1651 52 1 1.4137 -2.5662 -2.0946 53 1 0.5977 -3.8351 -1.1502 54 1 0.0304 -2.1504 -1.0544 55 1 1.6309 -6.2907 -0.0547 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647680976.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:47 Heat of formation + Delta-G solvation = 81.608205 kcal Electronic energy + Delta-G solvation = -32750.248375 eV Core-core repulsion = 28823.066238 eV Total energy + Delta-G solvation = -3927.182137 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.238 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.96100 -40.93057 -39.01550 -37.67394 -35.83388 -34.62116 -33.17592 -32.83313 -30.30469 -29.68034 -29.35296 -28.68446 -27.73467 -27.15721 -25.43495 -24.19854 -23.58932 -22.45214 -21.79476 -21.43502 -21.06292 -20.71290 -18.58622 -17.85055 -17.29073 -17.15944 -16.92975 -16.80080 -16.44411 -16.01797 -15.68131 -15.41984 -15.14458 -15.00935 -14.66042 -14.54853 -14.42201 -14.02840 -13.93167 -13.80930 -13.59219 -13.21317 -13.14560 -13.02247 -12.83447 -12.67712 -12.52207 -12.45686 -12.43374 -12.22344 -12.08827 -12.06442 -11.94121 -11.87623 -11.83618 -11.59606 -11.50481 -11.41037 -11.29669 -11.00768 -10.72726 -10.42345 -9.99799 -9.74099 -9.45523 -8.06392 -6.17406 0.85381 1.41020 1.43510 1.47006 1.58996 1.98669 2.23368 2.47898 3.01966 3.19211 3.50512 3.58365 3.69048 3.75544 3.79075 3.87222 3.91427 4.03320 4.09968 4.13902 4.19057 4.22793 4.27811 4.36290 4.45029 4.51411 4.59234 4.62203 4.67488 4.71150 4.75053 4.75803 4.78304 4.86863 4.89274 4.92037 4.96651 4.98765 5.02381 5.08323 5.08995 5.14457 5.20318 5.25716 5.31719 5.34687 5.47135 5.54330 5.61731 5.72304 5.90800 5.96227 6.04770 6.05976 6.29093 6.41033 6.86535 7.48708 7.98318 8.94719 Molecular weight = 347.24amu Principal moments of inertia in cm(-1) A = 0.017734 B = 0.002693 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.528151 B =10393.912212 C =10931.832252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.499 5.499 3 C 0.328 3.672 4 N -0.443 5.443 5 C 0.051 3.949 6 C -0.104 4.104 7 C -0.107 4.107 8 C 0.091 3.909 9 H 0.043 0.957 10 N -0.517 5.517 11 C 0.035 3.965 12 C -0.119 4.119 13 C -0.130 4.130 14 C 0.029 3.971 15 C 0.066 3.934 16 N -0.322 5.322 17 N -0.336 5.336 18 C 0.230 3.770 19 C 0.141 3.859 20 C -0.121 4.121 21 C -0.122 4.122 22 C -0.514 4.514 23 H 0.048 0.952 24 C 0.032 3.968 25 N -0.901 5.901 26 Si 0.945 3.055 27 H -0.284 1.284 28 H -0.277 1.277 29 H -0.277 1.277 30 H 0.091 0.909 31 H 0.105 0.895 32 H 0.102 0.898 33 H 0.053 0.947 34 H 0.068 0.932 35 H 0.104 0.896 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.088 0.912 39 H 0.096 0.904 40 H 0.046 0.954 41 H 0.086 0.914 42 H 0.076 0.924 43 H 0.070 0.930 44 H 0.076 0.924 45 H 0.033 0.967 46 H 0.067 0.933 47 H 0.055 0.945 48 H 0.061 0.939 49 H 0.044 0.956 50 H 0.082 0.918 51 H 0.015 0.985 52 H 0.014 0.986 53 H 0.081 0.919 54 H 0.046 0.954 55 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.621 23.988 -2.434 27.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.195 5.195 3 C -0.028 4.028 4 N -0.168 5.168 5 C -0.075 4.075 6 C -0.142 4.142 7 C -0.144 4.144 8 C -0.019 4.019 9 H 0.061 0.939 10 N -0.242 5.242 11 C -0.092 4.092 12 C -0.157 4.157 13 C -0.168 4.168 14 C -0.099 4.099 15 C -0.061 4.061 16 N -0.163 5.163 17 N -0.174 5.174 18 C -0.039 4.039 19 C 0.138 3.862 20 C -0.179 4.179 21 C -0.180 4.180 22 C -0.553 4.553 23 H 0.067 0.933 24 C -0.168 4.168 25 N -0.540 5.540 26 Si 0.772 3.228 27 H -0.209 1.209 28 H -0.202 1.202 29 H -0.203 1.203 30 H 0.109 0.891 31 H 0.123 0.877 32 H 0.121 0.879 33 H 0.071 0.929 34 H 0.087 0.913 35 H 0.122 0.878 36 H 0.089 0.911 37 H 0.096 0.904 38 H 0.106 0.894 39 H 0.114 0.886 40 H 0.065 0.935 41 H 0.104 0.896 42 H 0.095 0.905 43 H 0.089 0.911 44 H 0.094 0.906 45 H 0.051 0.949 46 H 0.086 0.914 47 H 0.073 0.927 48 H 0.079 0.921 49 H 0.063 0.937 50 H 0.101 0.899 51 H 0.034 0.966 52 H 0.033 0.967 53 H 0.099 0.901 54 H 0.065 0.935 55 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.230 23.834 -2.394 26.895 hybrid contribution 0.209 -1.153 -0.308 1.212 sum -12.020 22.680 -2.703 25.810 Atomic orbital electron populations 1.22659 0.74461 1.06179 1.04837 1.47329 1.09683 1.06679 1.55834 1.23043 0.87722 0.85987 1.06061 1.58981 1.43477 1.08205 1.06170 1.22442 0.97887 0.98964 0.88243 1.21572 1.00554 0.91977 1.00139 1.21651 0.98718 1.02644 0.91409 1.21676 0.94187 0.92869 0.93125 0.93876 1.64762 1.39639 1.17964 1.01867 1.23311 1.00386 0.87006 0.98464 1.22486 0.99864 0.99762 0.93562 1.22394 0.99877 0.96817 0.97683 1.22886 0.96935 1.00103 0.89975 1.22236 0.94058 0.97968 0.91849 1.74312 1.17763 1.03771 1.20463 1.74152 1.19909 1.01869 1.21457 1.25837 0.86222 0.92967 0.98838 1.16867 0.95087 0.79740 0.94510 1.21758 0.96904 1.03853 0.95401 1.21787 0.96710 1.03566 0.95965 1.21212 0.93009 0.91152 1.49919 0.93338 1.25340 0.98197 0.98492 0.94748 1.69830 1.21768 1.11518 1.50914 0.85691 0.80465 0.78753 0.77843 1.20904 1.20231 1.20292 0.89067 0.87681 0.87949 0.92892 0.91320 0.87790 0.91069 0.90448 0.89352 0.88565 0.93520 0.89559 0.90490 0.91101 0.90559 0.94857 0.91405 0.92665 0.92109 0.93749 0.89913 0.96557 0.96706 0.90071 0.93529 0.92661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.56 7.81 127.77 1.00 2.56 16 2 N -0.50 -18.49 3.21 -538.19 -1.73 -20.22 16 3 C 0.33 12.58 6.66 260.11 1.73 14.31 16 4 N -0.44 -12.83 4.70 -706.20 -3.32 -16.15 16 5 C 0.05 1.13 5.29 86.33 0.46 1.59 16 6 C -0.10 -1.52 6.09 30.65 0.19 -1.34 16 7 C -0.11 -1.41 5.08 30.68 0.16 -1.25 16 8 C 0.09 1.66 1.79 44.97 0.08 1.74 16 9 H 0.04 0.91 8.00 -2.39 -0.02 0.89 16 10 N -0.52 -8.59 5.11 -857.55 -4.38 -12.98 16 11 C 0.04 0.42 5.44 86.65 0.47 0.90 16 12 C -0.12 -1.24 7.06 31.80 0.22 -1.02 16 13 C -0.13 -1.70 6.93 31.48 0.22 -1.48 16 14 C 0.03 0.52 5.48 86.45 0.47 0.99 16 15 C 0.07 1.60 4.33 86.33 0.37 1.98 16 16 N -0.32 -15.51 12.23 -58.00 -0.71 -16.22 16 17 N -0.34 -17.78 11.00 -49.54 -0.54 -18.33 16 18 C 0.23 10.86 6.34 137.64 0.87 11.73 16 19 C 0.14 6.85 0.47 -53.67 -0.03 6.82 16 20 C -0.12 -5.45 8.19 71.98 0.59 -4.86 16 21 C -0.12 -5.46 8.07 71.98 0.58 -4.88 16 22 C -0.51 -28.92 7.91 25.60 0.20 -28.71 16 23 H 0.05 2.97 6.95 -2.91 -0.02 2.95 16 24 C 0.03 1.70 5.14 84.65 0.43 2.14 16 25 N -0.90 -47.67 9.33 21.45 0.20 -47.47 16 26 Si 0.95 44.62 29.54 68.60 2.03 46.65 16 27 H -0.28 -13.95 7.11 99.48 0.71 -13.25 16 28 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 29 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 30 H 0.09 2.11 7.70 -2.39 -0.02 2.09 16 31 H 0.10 2.08 5.32 -2.39 -0.01 2.07 16 32 H 0.10 2.69 4.58 -2.39 -0.01 2.68 16 33 H 0.05 1.04 5.87 -2.39 -0.01 1.03 16 34 H 0.07 1.75 8.10 -2.39 -0.02 1.73 16 35 H 0.10 1.03 8.14 -2.38 -0.02 1.01 16 36 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 38 H 0.09 0.87 7.09 -2.39 -0.02 0.86 16 39 H 0.10 0.92 7.72 -2.39 -0.02 0.90 16 40 H 0.05 0.56 8.00 -2.39 -0.02 0.55 16 41 H 0.09 0.66 8.14 -2.38 -0.02 0.64 16 42 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 45 H 0.03 0.68 7.61 -2.39 -0.02 0.66 16 46 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 47 H 0.05 1.59 7.20 -2.39 -0.02 1.57 16 48 H 0.06 1.36 5.52 -2.39 -0.01 1.35 16 49 H 0.04 1.64 5.82 -2.39 -0.01 1.63 16 50 H 0.08 4.05 5.96 -2.38 -0.01 4.04 16 51 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 52 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 53 H 0.08 3.94 6.07 -2.38 -0.01 3.92 16 54 H 0.05 1.69 5.56 -2.39 -0.01 1.68 16 55 H 0.26 13.31 8.31 -92.71 -0.77 12.54 16 Total: -1.00 -68.96 397.27 0.45 -68.51 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: 0.88 Total: 15.00 kcal Atomic # 6 Polarization: -6.81 SS G_CDS: 8.03 Total: 1.21 kcal Atomic # 7 Polarization: -120.88 SS G_CDS: -10.48 Total: -131.36 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -68.96 0.45 -68.51 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647680976.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.114 kcal (2) G-P(sol) polarization free energy of solvation -68.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds