Wall clock time and date at job start Wed Apr 1 2020 05:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46504 * 109.47083 * 2 1 4 4 C 1.36729 * 127.13900 * 88.20031 * 3 2 1 5 5 C 1.50704 * 126.35030 * 359.97438 * 4 3 2 6 6 C 1.53097 * 109.52750 * 239.68190 * 5 4 3 7 7 C 1.53040 * 109.28624 * 182.43369 * 6 5 4 8 8 N 1.46844 * 109.51374 * 59.18631 * 7 6 5 9 9 C 1.46910 * 110.99778 * 174.16394 * 8 7 6 10 10 C 1.50699 * 109.46835 * 189.99691 * 9 8 7 11 11 H 1.07998 * 120.00263 * 0.02562 * 10 9 8 12 12 C 1.37880 * 120.00024 * 179.97438 * 10 9 8 13 13 N 1.31521 * 119.99544 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 120.00273 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47178 * 60.00022 * 14 12 10 16 16 H 1.48497 * 109.47251 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.46942 * 299.99782 * 14 12 10 18 18 C 1.46846 * 111.19970 * 298.25914 * 8 7 6 19 19 C 1.53034 * 109.52156 * 61.74241 * 18 8 7 20 20 N 1.30292 * 107.30633 * 180.26263 * 4 3 2 21 21 N 1.28527 * 110.05140 * 359.55915 * 20 4 3 22 22 C 1.31212 * 109.86273 * 0.45103 * 21 20 4 23 23 N 1.38579 * 126.47607 * 179.73102 * 22 21 20 24 24 C 1.46847 * 111.00225 * 63.06710 * 23 22 21 25 25 C 1.53035 * 109.52544 * 174.16134 * 24 23 22 26 26 C 1.53117 * 109.27627 * 59.17821 * 25 24 23 27 27 C 1.53115 * 109.16093 * 302.34454 * 26 25 24 28 28 C 1.46844 * 111.00075 * 298.85730 * 23 22 21 29 29 H 1.08998 * 109.47013 * 60.00140 * 1 2 3 30 30 H 1.09003 * 109.47080 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47023 * 300.00449 * 1 2 3 32 32 H 1.09001 * 109.47023 * 239.99551 * 2 1 3 33 33 H 1.09007 * 109.47103 * 119.99637 * 2 1 3 34 34 H 1.09002 * 109.56852 * 359.84740 * 5 4 3 35 35 H 1.08996 * 109.48843 * 62.49660 * 6 5 4 36 36 H 1.08997 * 109.50372 * 302.38352 * 6 5 4 37 37 H 1.08999 * 109.46136 * 299.17017 * 7 6 5 38 38 H 1.09003 * 109.45630 * 179.19210 * 7 6 5 39 39 H 1.08994 * 109.46867 * 309.99907 * 9 8 7 40 40 H 1.09000 * 109.46931 * 70.00036 * 9 8 7 41 41 H 0.96994 * 119.99863 * 179.97438 * 13 12 10 42 42 H 1.08995 * 109.46507 * 181.76535 * 18 8 7 43 43 H 1.09009 * 109.46025 * 301.74154 * 18 8 7 44 44 H 1.08995 * 109.50628 * 60.76740 * 19 18 8 45 45 H 1.09000 * 109.50475 * 180.84178 * 19 18 8 46 46 H 1.08997 * 109.46262 * 294.18125 * 24 23 22 47 47 H 1.09005 * 109.46135 * 54.14454 * 24 23 22 48 48 H 1.09005 * 109.50101 * 299.24074 * 25 24 23 49 49 H 1.08994 * 109.50429 * 179.12232 * 25 24 23 50 50 H 1.09006 * 109.51844 * 182.44234 * 26 25 24 51 51 H 1.08997 * 109.57444 * 62.28798 * 26 25 24 52 52 H 1.08997 * 109.50735 * 297.71293 * 27 26 25 53 53 H 1.09006 * 109.53519 * 177.61859 * 27 26 25 54 54 H 1.09004 * 109.46453 * 305.85583 * 28 23 22 55 55 H 1.09001 * 109.46521 * 65.83021 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2612 2.1710 1.0894 5 6 2.0752 1.7825 2.5336 6 6 1.0652 2.7265 3.1914 7 6 0.9260 2.3655 4.6721 8 7 2.2333 2.4827 5.3306 9 6 2.1128 2.2781 6.7804 10 6 3.4127 2.6445 7.4491 11 1 4.2449 2.9946 6.8565 12 6 3.5391 2.5336 8.8176 13 7 2.5254 2.1077 9.5392 14 14 5.1501 2.9883 9.6466 15 1 5.4632 4.4137 9.3717 16 1 5.0283 2.7815 11.1120 17 1 6.2397 2.1307 9.1150 18 6 3.2073 1.5514 4.7469 19 6 3.4143 1.8881 3.2685 20 7 2.6775 3.3238 0.6474 21 7 2.7226 3.3131 -0.6370 22 6 2.3252 2.1465 -1.0874 23 7 2.2342 1.7638 -2.4162 24 6 3.5552 1.7711 -3.0575 25 6 3.4386 1.2064 -4.4751 26 6 2.4550 2.0603 -5.2800 27 6 1.1009 2.0755 -4.5653 28 6 1.2853 2.6150 -3.1451 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8901 34 1 1.7077 0.7579 2.5916 35 1 0.0980 2.6242 2.6995 36 1 1.4144 3.7548 3.0988 37 1 0.5636 1.3416 4.7638 38 1 0.2182 3.0452 5.1466 39 1 1.3132 2.9076 7.1708 40 1 1.8828 1.2319 6.9818 41 1 2.6145 2.0293 10.5019 42 1 4.1562 1.6396 5.2759 43 1 2.8341 0.5313 4.8381 44 1 3.8005 2.9033 3.1770 45 1 4.1260 1.1874 2.8319 46 1 3.9309 2.7932 -3.1035 47 1 4.2440 1.1569 -2.4774 48 1 3.0759 0.1795 -4.4291 49 1 4.4163 1.2265 -4.9564 50 1 2.3358 1.6362 -6.2771 51 1 2.8360 3.0783 -5.3604 52 1 0.7015 1.0623 -4.5207 53 1 0.4080 2.7161 -5.1109 54 1 0.3254 2.6138 -2.6287 55 1 1.6717 3.6332 -3.1909 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647706154.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:27 Heat of formation + Delta-G solvation = 54.900636 kcal Electronic energy + Delta-G solvation = -31688.851393 eV Core-core repulsion = 27760.511129 eV Total energy + Delta-G solvation = -3928.340264 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.238 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -44.12614 -40.16022 -39.70192 -36.75668 -35.86224 -34.71362 -33.88502 -31.93542 -31.82405 -31.50312 -30.37611 -28.63968 -26.08442 -25.63632 -24.87785 -24.13259 -24.02173 -23.50137 -22.32433 -21.54865 -20.76877 -20.19748 -18.52031 -18.42115 -17.53115 -17.15818 -17.05762 -16.33316 -15.89573 -15.87877 -15.77965 -15.54094 -15.15669 -14.97538 -14.80222 -14.62669 -14.49249 -14.36867 -14.18159 -14.01850 -13.84375 -13.45838 -13.32216 -13.26776 -13.05197 -12.77774 -12.56687 -12.48367 -12.41791 -12.22208 -12.17707 -12.05500 -11.95670 -11.78853 -11.70704 -11.51510 -11.47767 -11.45654 -11.37722 -11.16557 -11.09728 -10.58635 -10.04819 -9.91905 -8.94580 -8.18490 -6.27792 0.63602 1.17421 1.41758 1.44859 1.52621 1.71241 2.41670 2.60884 3.13114 3.16790 3.31967 3.56677 3.70782 3.74488 3.83903 3.86926 3.97149 4.02864 4.05044 4.19669 4.20874 4.29190 4.32520 4.35591 4.39371 4.43604 4.47562 4.57347 4.60370 4.63451 4.68748 4.75996 4.76420 4.81838 4.83322 4.90275 4.92629 4.97299 5.05484 5.09444 5.14962 5.17077 5.18007 5.19781 5.22583 5.24611 5.34938 5.43366 5.46588 5.57822 5.68028 5.69563 6.08897 6.19485 6.39242 6.69955 6.88397 7.41533 7.66233 8.92037 Molecular weight = 347.24amu Principal moments of inertia in cm(-1) A = 0.024554 B = 0.002085 C = 0.002014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.085307 B =13425.682531 C =13895.979511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.098 3.902 3 N -0.458 5.458 4 C 0.202 3.798 5 C 0.012 3.988 6 C -0.088 4.088 7 C 0.058 3.942 8 N -0.549 5.549 9 C 0.209 3.791 10 C -0.523 4.523 11 H 0.060 0.940 12 C 0.002 3.998 13 N -0.933 5.933 14 Si 0.966 3.034 15 H -0.272 1.272 16 H -0.282 1.282 17 H -0.267 1.267 18 C 0.071 3.929 19 C -0.091 4.091 20 N -0.320 5.320 21 N -0.350 5.350 22 C 0.342 3.658 23 N -0.451 5.451 24 C 0.065 3.935 25 C -0.107 4.107 26 C -0.123 4.123 27 C -0.107 4.107 28 C 0.067 3.933 29 H 0.056 0.944 30 H 0.104 0.896 31 H 0.053 0.947 32 H 0.115 0.885 33 H 0.108 0.892 34 H 0.107 0.893 35 H 0.081 0.919 36 H 0.061 0.939 37 H 0.034 0.966 38 H 0.066 0.934 39 H 0.004 0.996 40 H -0.033 1.033 41 H 0.264 0.736 42 H 0.064 0.936 43 H 0.028 0.972 44 H 0.059 0.941 45 H 0.078 0.922 46 H 0.034 0.966 47 H 0.069 0.931 48 H 0.080 0.920 49 H 0.086 0.914 50 H 0.086 0.914 51 H 0.056 0.944 52 H 0.080 0.920 53 H 0.086 0.914 54 H 0.068 0.932 55 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.270 -8.884 -31.904 33.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.022 4.022 3 N -0.150 5.150 4 C -0.067 4.067 5 C -0.009 4.009 6 C -0.127 4.127 7 C -0.070 4.070 8 N -0.274 5.274 9 C 0.083 3.917 10 C -0.561 4.561 11 H 0.078 0.922 12 C -0.196 4.196 13 N -0.573 5.573 14 Si 0.791 3.209 15 H -0.197 1.197 16 H -0.208 1.208 17 H -0.192 1.192 18 C -0.057 4.057 19 C -0.130 4.130 20 N -0.159 5.159 21 N -0.194 5.194 22 C -0.015 4.015 23 N -0.178 5.178 24 C -0.062 4.062 25 C -0.145 4.145 26 C -0.160 4.160 27 C -0.145 4.145 28 C -0.060 4.060 29 H 0.075 0.925 30 H 0.123 0.877 31 H 0.072 0.928 32 H 0.133 0.867 33 H 0.126 0.874 34 H 0.125 0.875 35 H 0.099 0.901 36 H 0.079 0.921 37 H 0.052 0.948 38 H 0.084 0.916 39 H 0.022 0.978 40 H -0.015 1.015 41 H 0.073 0.927 42 H 0.083 0.917 43 H 0.046 0.954 44 H 0.078 0.922 45 H 0.096 0.904 46 H 0.053 0.947 47 H 0.087 0.913 48 H 0.099 0.901 49 H 0.104 0.896 50 H 0.105 0.895 51 H 0.075 0.925 52 H 0.099 0.901 53 H 0.104 0.896 54 H 0.086 0.914 55 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -3.845 -7.537 -31.854 32.958 hybrid contribution 0.198 -0.718 1.315 1.512 sum -3.647 -8.254 -30.538 31.844 Atomic orbital electron populations 1.22096 0.92710 1.04715 1.02300 1.22225 0.96736 0.76936 1.06345 1.46652 1.48605 1.14818 1.04900 1.24890 1.01562 0.88242 0.91968 1.19668 0.97571 1.00871 0.82751 1.21449 0.98324 0.99354 0.93553 1.22041 0.91229 0.99433 0.94279 1.61920 1.08332 1.52658 1.04505 1.19346 0.96287 0.92805 0.83296 1.21440 0.99041 1.43427 0.92197 0.92150 1.25874 1.00359 0.95247 0.98100 1.70070 1.32707 1.48028 1.06527 0.85483 0.79422 0.78966 0.77032 1.19702 1.20782 1.19183 1.21877 0.96886 0.92947 0.94007 1.21501 0.95556 1.02509 0.93446 1.73981 1.19476 1.19450 1.03020 1.74518 1.21654 1.19205 1.03994 1.22587 1.01754 0.87787 0.89412 1.58882 1.12068 1.52485 0.94360 1.22218 0.87014 1.00283 0.96705 1.21594 1.00887 1.00341 0.91665 1.21623 0.94683 1.00149 0.99590 1.21595 0.98289 1.02687 0.91926 1.22191 0.94316 0.93900 0.95593 0.92504 0.87736 0.92800 0.86670 0.87386 0.87512 0.90061 0.92052 0.94820 0.91590 0.97808 1.01486 0.92722 0.91720 0.95374 0.92169 0.90376 0.94732 0.91273 0.90087 0.89592 0.89529 0.92494 0.90111 0.89582 0.91352 0.94738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.82 10.24 71.98 0.74 -1.08 16 2 C 0.10 1.32 6.57 86.38 0.57 1.89 16 3 N -0.46 -10.24 2.81 -514.84 -1.45 -11.68 16 4 C 0.20 5.66 6.58 137.64 0.91 6.56 16 5 C 0.01 0.33 2.62 -11.47 -0.03 0.30 16 6 C -0.09 -2.60 5.36 30.64 0.16 -2.43 16 7 C 0.06 2.05 5.46 86.33 0.47 2.52 16 8 N -0.55 -23.94 4.65 -900.92 -4.19 -28.13 16 9 C 0.21 11.19 4.72 85.55 0.40 11.60 16 10 C -0.52 -29.99 8.43 25.60 0.22 -29.77 16 11 H 0.06 3.43 7.12 -2.91 -0.02 3.41 16 12 C 0.00 0.13 5.46 84.65 0.46 0.59 16 13 N -0.93 -56.33 13.29 21.45 0.28 -56.04 16 14 Si 0.97 44.93 29.54 68.60 2.03 46.96 16 15 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 16 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 17 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 18 C 0.07 2.70 5.29 86.32 0.46 3.16 16 19 C -0.09 -2.85 5.36 30.64 0.16 -2.68 16 20 N -0.32 -11.12 12.18 -49.54 -0.60 -11.72 16 21 N -0.35 -11.45 12.19 -58.01 -0.71 -12.16 16 22 C 0.34 8.56 6.41 260.11 1.67 10.23 16 23 N -0.45 -8.26 4.67 -706.17 -3.30 -11.56 16 24 C 0.06 1.07 5.39 86.32 0.47 1.53 16 25 C -0.11 -1.03 6.09 30.64 0.19 -0.84 16 26 C -0.12 -1.05 6.00 30.67 0.18 -0.87 16 27 C -0.11 -1.02 6.09 30.64 0.19 -0.84 16 28 C 0.07 1.10 5.37 86.32 0.46 1.56 16 29 H 0.06 0.73 8.14 -2.39 -0.02 0.72 16 30 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.12 1.23 8.14 -2.39 -0.02 1.22 16 33 H 0.11 1.19 7.32 -2.38 -0.02 1.17 16 34 H 0.11 2.28 7.00 -2.39 -0.02 2.26 16 35 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.07 2.39 8.02 -2.39 -0.02 2.37 16 39 H 0.00 0.22 7.99 -2.39 -0.02 0.20 16 40 H -0.03 -1.85 8.12 -2.39 -0.02 -1.87 16 41 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 42 H 0.06 2.75 6.70 -2.39 -0.02 2.73 16 43 H 0.03 1.01 8.14 -2.38 -0.02 0.99 16 44 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 45 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 46 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 47 H 0.07 1.20 8.10 -2.38 -0.02 1.18 16 48 H 0.08 0.68 8.14 -2.38 -0.02 0.66 16 49 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 50 H 0.09 0.47 8.14 -2.38 -0.02 0.45 16 51 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 52 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 53 H 0.09 0.63 8.14 -2.38 -0.02 0.62 16 54 H 0.07 1.19 8.10 -2.39 -0.02 1.17 16 55 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 Total: -1.00 -72.90 425.42 0.58 -72.32 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: 0.83 Total: 10.59 kcal Atomic # 6 Polarization: -6.24 SS G_CDS: 7.67 Total: 1.43 kcal Atomic # 7 Polarization: -121.34 SS G_CDS: -9.96 Total: -131.30 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -72.90 0.58 -72.32 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647706154.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.222 kcal (2) G-P(sol) polarization free energy of solvation -72.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds