Wall clock time and date at job start Wed Apr 1 2020 05:01:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 N 1.46504 * 109.47083 * 2 1
4 4 C 1.36729 * 127.13900 * 88.20031 * 3 2 1
5 5 C 1.50704 * 126.35030 * 359.97438 * 4 3 2
6 6 C 1.53097 * 109.52750 * 239.68190 * 5 4 3
7 7 C 1.53040 * 109.28624 * 182.43369 * 6 5 4
8 8 N 1.46844 * 109.51374 * 59.18631 * 7 6 5
9 9 C 1.46910 * 110.99778 * 174.16394 * 8 7 6
10 10 C 1.50699 * 109.46835 * 189.99691 * 9 8 7
11 11 H 1.07998 * 120.00263 * 0.02562 * 10 9 8
12 12 C 1.37880 * 120.00024 * 179.97438 * 10 9 8
13 13 N 1.31521 * 119.99544 * 0.02562 * 12 10 9
14 14 Si 1.86796 * 120.00273 * 180.02562 * 12 10 9
15 15 H 1.48501 * 109.47178 * 60.00022 * 14 12 10
16 16 H 1.48497 * 109.47251 * 180.02562 * 14 12 10
17 17 H 1.48499 * 109.46942 * 299.99782 * 14 12 10
18 18 C 1.46846 * 111.19970 * 298.25914 * 8 7 6
19 19 C 1.53034 * 109.52156 * 61.74241 * 18 8 7
20 20 N 1.30292 * 107.30633 * 180.26263 * 4 3 2
21 21 N 1.28527 * 110.05140 * 359.55915 * 20 4 3
22 22 C 1.31212 * 109.86273 * 0.45103 * 21 20 4
23 23 N 1.38579 * 126.47607 * 179.73102 * 22 21 20
24 24 C 1.46847 * 111.00225 * 63.06710 * 23 22 21
25 25 C 1.53035 * 109.52544 * 174.16134 * 24 23 22
26 26 C 1.53117 * 109.27627 * 59.17821 * 25 24 23
27 27 C 1.53115 * 109.16093 * 302.34454 * 26 25 24
28 28 C 1.46844 * 111.00075 * 298.85730 * 23 22 21
29 29 H 1.08998 * 109.47013 * 60.00140 * 1 2 3
30 30 H 1.09003 * 109.47080 * 180.02562 * 1 2 3
31 31 H 1.09001 * 109.47023 * 300.00449 * 1 2 3
32 32 H 1.09001 * 109.47023 * 239.99551 * 2 1 3
33 33 H 1.09007 * 109.47103 * 119.99637 * 2 1 3
34 34 H 1.09002 * 109.56852 * 359.84740 * 5 4 3
35 35 H 1.08996 * 109.48843 * 62.49660 * 6 5 4
36 36 H 1.08997 * 109.50372 * 302.38352 * 6 5 4
37 37 H 1.08999 * 109.46136 * 299.17017 * 7 6 5
38 38 H 1.09003 * 109.45630 * 179.19210 * 7 6 5
39 39 H 1.08994 * 109.46867 * 309.99907 * 9 8 7
40 40 H 1.09000 * 109.46931 * 70.00036 * 9 8 7
41 41 H 0.96994 * 119.99863 * 179.97438 * 13 12 10
42 42 H 1.08995 * 109.46507 * 181.76535 * 18 8 7
43 43 H 1.09009 * 109.46025 * 301.74154 * 18 8 7
44 44 H 1.08995 * 109.50628 * 60.76740 * 19 18 8
45 45 H 1.09000 * 109.50475 * 180.84178 * 19 18 8
46 46 H 1.08997 * 109.46262 * 294.18125 * 24 23 22
47 47 H 1.09005 * 109.46135 * 54.14454 * 24 23 22
48 48 H 1.09005 * 109.50101 * 299.24074 * 25 24 23
49 49 H 1.08994 * 109.50429 * 179.12232 * 25 24 23
50 50 H 1.09006 * 109.51844 * 182.44234 * 26 25 24
51 51 H 1.08997 * 109.57444 * 62.28798 * 26 25 24
52 52 H 1.08997 * 109.50735 * 297.71293 * 27 26 25
53 53 H 1.09006 * 109.53519 * 177.61859 * 27 26 25
54 54 H 1.09004 * 109.46453 * 305.85583 * 28 23 22
55 55 H 1.09001 * 109.46521 * 65.83021 * 28 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3813 0.0000
4 6 2.2612 2.1710 1.0894
5 6 2.0752 1.7825 2.5336
6 6 1.0652 2.7265 3.1914
7 6 0.9260 2.3655 4.6721
8 7 2.2333 2.4827 5.3306
9 6 2.1128 2.2781 6.7804
10 6 3.4127 2.6445 7.4491
11 1 4.2449 2.9946 6.8565
12 6 3.5391 2.5336 8.8176
13 7 2.5254 2.1077 9.5392
14 14 5.1501 2.9883 9.6466
15 1 5.4632 4.4137 9.3717
16 1 5.0283 2.7815 11.1120
17 1 6.2397 2.1307 9.1150
18 6 3.2073 1.5514 4.7469
19 6 3.4143 1.8881 3.2685
20 7 2.6775 3.3238 0.6474
21 7 2.7226 3.3131 -0.6370
22 6 2.3252 2.1465 -1.0874
23 7 2.2342 1.7638 -2.4162
24 6 3.5552 1.7711 -3.0575
25 6 3.4386 1.2064 -4.4751
26 6 2.4550 2.0603 -5.2800
27 6 1.1009 2.0755 -4.5653
28 6 1.2853 2.6150 -3.1451
29 1 -0.3633 0.5138 -0.8900
30 1 -0.3633 -1.0277 0.0005
31 1 -0.3633 0.5139 0.8900
32 1 1.8933 -0.5139 -0.8900
33 1 1.8934 -0.5138 0.8901
34 1 1.7077 0.7579 2.5916
35 1 0.0980 2.6242 2.6995
36 1 1.4144 3.7548 3.0988
37 1 0.5636 1.3416 4.7638
38 1 0.2182 3.0452 5.1466
39 1 1.3132 2.9076 7.1708
40 1 1.8828 1.2319 6.9818
41 1 2.6145 2.0293 10.5019
42 1 4.1562 1.6396 5.2759
43 1 2.8341 0.5313 4.8381
44 1 3.8005 2.9033 3.1770
45 1 4.1260 1.1874 2.8319
46 1 3.9309 2.7932 -3.1035
47 1 4.2440 1.1569 -2.4774
48 1 3.0759 0.1795 -4.4291
49 1 4.4163 1.2265 -4.9564
50 1 2.3358 1.6362 -6.2771
51 1 2.8360 3.0783 -5.3604
52 1 0.7015 1.0623 -4.5207
53 1 0.4080 2.7161 -5.1109
54 1 0.3254 2.6138 -2.6287
55 1 1.6717 3.6332 -3.1909
RHF calculation, no. of doubly occupied orbitals= 67
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001647706154.mol2 55
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:01:27
Heat of formation + Delta-G solvation = 54.900636 kcal
Electronic energy + Delta-G solvation = -31688.851393 eV
Core-core repulsion = 27760.511129 eV
Total energy + Delta-G solvation = -3928.340264 eV
No. of doubly occupied orbitals = 67
Molecular weight
(most abundant/longest-lived isotopes) = 347.238 amu
Computer time = 1.03 seconds
Orbital eigenvalues (eV)
-44.12614 -40.16022 -39.70192 -36.75668 -35.86224 -34.71362 -33.88502 -31.93542
-31.82405 -31.50312 -30.37611 -28.63968 -26.08442 -25.63632 -24.87785 -24.13259
-24.02173 -23.50137 -22.32433 -21.54865 -20.76877 -20.19748 -18.52031 -18.42115
-17.53115 -17.15818 -17.05762 -16.33316 -15.89573 -15.87877 -15.77965 -15.54094
-15.15669 -14.97538 -14.80222 -14.62669 -14.49249 -14.36867 -14.18159 -14.01850
-13.84375 -13.45838 -13.32216 -13.26776 -13.05197 -12.77774 -12.56687 -12.48367
-12.41791 -12.22208 -12.17707 -12.05500 -11.95670 -11.78853 -11.70704 -11.51510
-11.47767 -11.45654 -11.37722 -11.16557 -11.09728 -10.58635 -10.04819 -9.91905
-8.94580 -8.18490 -6.27792 0.63602 1.17421 1.41758 1.44859 1.52621
1.71241 2.41670 2.60884 3.13114 3.16790 3.31967 3.56677 3.70782
3.74488 3.83903 3.86926 3.97149 4.02864 4.05044 4.19669 4.20874
4.29190 4.32520 4.35591 4.39371 4.43604 4.47562 4.57347 4.60370
4.63451 4.68748 4.75996 4.76420 4.81838 4.83322 4.90275 4.92629
4.97299 5.05484 5.09444 5.14962 5.17077 5.18007 5.19781 5.22583
5.24611 5.34938 5.43366 5.46588 5.57822 5.68028 5.69563 6.08897
6.19485 6.39242 6.69955 6.88397 7.41533 7.66233 8.92037
Molecular weight = 347.24amu
Principal moments of inertia in cm(-1)
A = 0.024554 B = 0.002085 C = 0.002014
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1140.085307 B =13425.682531 C =13895.979511
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.160 4.160
2 C 0.098 3.902
3 N -0.458 5.458
4 C 0.202 3.798
5 C 0.012 3.988
6 C -0.088 4.088
7 C 0.058 3.942
8 N -0.549 5.549
9 C 0.209 3.791
10 C -0.523 4.523
11 H 0.060 0.940
12 C 0.002 3.998
13 N -0.933 5.933
14 Si 0.966 3.034
15 H -0.272 1.272
16 H -0.282 1.282
17 H -0.267 1.267
18 C 0.071 3.929
19 C -0.091 4.091
20 N -0.320 5.320
21 N -0.350 5.350
22 C 0.342 3.658
23 N -0.451 5.451
24 C 0.065 3.935
25 C -0.107 4.107
26 C -0.123 4.123
27 C -0.107 4.107
28 C 0.067 3.933
29 H 0.056 0.944
30 H 0.104 0.896
31 H 0.053 0.947
32 H 0.115 0.885
33 H 0.108 0.892
34 H 0.107 0.893
35 H 0.081 0.919
36 H 0.061 0.939
37 H 0.034 0.966
38 H 0.066 0.934
39 H 0.004 0.996
40 H -0.033 1.033
41 H 0.264 0.736
42 H 0.064 0.936
43 H 0.028 0.972
44 H 0.059 0.941
45 H 0.078 0.922
46 H 0.034 0.966
47 H 0.069 0.931
48 H 0.080 0.920
49 H 0.086 0.914
50 H 0.086 0.914
51 H 0.056 0.944
52 H 0.080 0.920
53 H 0.086 0.914
54 H 0.068 0.932
55 H 0.034 0.966
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.270 -8.884 -31.904 33.392
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.218 4.218
2 C -0.022 4.022
3 N -0.150 5.150
4 C -0.067 4.067
5 C -0.009 4.009
6 C -0.127 4.127
7 C -0.070 4.070
8 N -0.274 5.274
9 C 0.083 3.917
10 C -0.561 4.561
11 H 0.078 0.922
12 C -0.196 4.196
13 N -0.573 5.573
14 Si 0.791 3.209
15 H -0.197 1.197
16 H -0.208 1.208
17 H -0.192 1.192
18 C -0.057 4.057
19 C -0.130 4.130
20 N -0.159 5.159
21 N -0.194 5.194
22 C -0.015 4.015
23 N -0.178 5.178
24 C -0.062 4.062
25 C -0.145 4.145
26 C -0.160 4.160
27 C -0.145 4.145
28 C -0.060 4.060
29 H 0.075 0.925
30 H 0.123 0.877
31 H 0.072 0.928
32 H 0.133 0.867
33 H 0.126 0.874
34 H 0.125 0.875
35 H 0.099 0.901
36 H 0.079 0.921
37 H 0.052 0.948
38 H 0.084 0.916
39 H 0.022 0.978
40 H -0.015 1.015
41 H 0.073 0.927
42 H 0.083 0.917
43 H 0.046 0.954
44 H 0.078 0.922
45 H 0.096 0.904
46 H 0.053 0.947
47 H 0.087 0.913
48 H 0.099 0.901
49 H 0.104 0.896
50 H 0.105 0.895
51 H 0.075 0.925
52 H 0.099 0.901
53 H 0.104 0.896
54 H 0.086 0.914
55 H 0.053 0.947
Dipole moment (debyes) X Y Z Total
from point charges -3.845 -7.537 -31.854 32.958
hybrid contribution 0.198 -0.718 1.315 1.512
sum -3.647 -8.254 -30.538 31.844
Atomic orbital electron populations
1.22096 0.92710 1.04715 1.02300 1.22225 0.96736 0.76936 1.06345
1.46652 1.48605 1.14818 1.04900 1.24890 1.01562 0.88242 0.91968
1.19668 0.97571 1.00871 0.82751 1.21449 0.98324 0.99354 0.93553
1.22041 0.91229 0.99433 0.94279 1.61920 1.08332 1.52658 1.04505
1.19346 0.96287 0.92805 0.83296 1.21440 0.99041 1.43427 0.92197
0.92150 1.25874 1.00359 0.95247 0.98100 1.70070 1.32707 1.48028
1.06527 0.85483 0.79422 0.78966 0.77032 1.19702 1.20782 1.19183
1.21877 0.96886 0.92947 0.94007 1.21501 0.95556 1.02509 0.93446
1.73981 1.19476 1.19450 1.03020 1.74518 1.21654 1.19205 1.03994
1.22587 1.01754 0.87787 0.89412 1.58882 1.12068 1.52485 0.94360
1.22218 0.87014 1.00283 0.96705 1.21594 1.00887 1.00341 0.91665
1.21623 0.94683 1.00149 0.99590 1.21595 0.98289 1.02687 0.91926
1.22191 0.94316 0.93900 0.95593 0.92504 0.87736 0.92800 0.86670
0.87386 0.87512 0.90061 0.92052 0.94820 0.91590 0.97808 1.01486
0.92722 0.91720 0.95374 0.92169 0.90376 0.94732 0.91273 0.90087
0.89592 0.89529 0.92494 0.90111 0.89582 0.91352 0.94738
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.82 10.24 71.98 0.74 -1.08 16
2 C 0.10 1.32 6.57 86.38 0.57 1.89 16
3 N -0.46 -10.24 2.81 -514.84 -1.45 -11.68 16
4 C 0.20 5.66 6.58 137.64 0.91 6.56 16
5 C 0.01 0.33 2.62 -11.47 -0.03 0.30 16
6 C -0.09 -2.60 5.36 30.64 0.16 -2.43 16
7 C 0.06 2.05 5.46 86.33 0.47 2.52 16
8 N -0.55 -23.94 4.65 -900.92 -4.19 -28.13 16
9 C 0.21 11.19 4.72 85.55 0.40 11.60 16
10 C -0.52 -29.99 8.43 25.60 0.22 -29.77 16
11 H 0.06 3.43 7.12 -2.91 -0.02 3.41 16
12 C 0.00 0.13 5.46 84.65 0.46 0.59 16
13 N -0.93 -56.33 13.29 21.45 0.28 -56.04 16
14 Si 0.97 44.93 29.54 68.60 2.03 46.96 16
15 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16
16 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16
17 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16
18 C 0.07 2.70 5.29 86.32 0.46 3.16 16
19 C -0.09 -2.85 5.36 30.64 0.16 -2.68 16
20 N -0.32 -11.12 12.18 -49.54 -0.60 -11.72 16
21 N -0.35 -11.45 12.19 -58.01 -0.71 -12.16 16
22 C 0.34 8.56 6.41 260.11 1.67 10.23 16
23 N -0.45 -8.26 4.67 -706.17 -3.30 -11.56 16
24 C 0.06 1.07 5.39 86.32 0.47 1.53 16
25 C -0.11 -1.03 6.09 30.64 0.19 -0.84 16
26 C -0.12 -1.05 6.00 30.67 0.18 -0.87 16
27 C -0.11 -1.02 6.09 30.64 0.19 -0.84 16
28 C 0.07 1.10 5.37 86.32 0.46 1.56 16
29 H 0.06 0.73 8.14 -2.39 -0.02 0.72 16
30 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16
31 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16
32 H 0.12 1.23 8.14 -2.39 -0.02 1.22 16
33 H 0.11 1.19 7.32 -2.38 -0.02 1.17 16
34 H 0.11 2.28 7.00 -2.39 -0.02 2.26 16
35 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16
36 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16
37 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16
38 H 0.07 2.39 8.02 -2.39 -0.02 2.37 16
39 H 0.00 0.22 7.99 -2.39 -0.02 0.20 16
40 H -0.03 -1.85 8.12 -2.39 -0.02 -1.87 16
41 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16
42 H 0.06 2.75 6.70 -2.39 -0.02 2.73 16
43 H 0.03 1.01 8.14 -2.38 -0.02 0.99 16
44 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16
45 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16
46 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16
47 H 0.07 1.20 8.10 -2.38 -0.02 1.18 16
48 H 0.08 0.68 8.14 -2.38 -0.02 0.66 16
49 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16
50 H 0.09 0.47 8.14 -2.38 -0.02 0.45 16
51 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16
52 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16
53 H 0.09 0.63 8.14 -2.38 -0.02 0.62 16
54 H 0.07 1.19 8.10 -2.39 -0.02 1.17 16
55 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16
Total: -1.00 -72.90 425.42 0.58 -72.32
By element:
Atomic # 1 Polarization: 9.75 SS G_CDS: 0.83 Total: 10.59 kcal
Atomic # 6 Polarization: -6.24 SS G_CDS: 7.67 Total: 1.43 kcal
Atomic # 7 Polarization: -121.34 SS G_CDS: -9.96 Total: -131.30 kcal
Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal
Total: -72.90 0.58 -72.32 kcal
The number of atoms in the molecule is 55
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001647706154.mol2 55
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 127.222 kcal
(2) G-P(sol) polarization free energy of solvation -72.899 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.323 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.578 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.321 kcal
(6) G-S(sol) free energy of system = (1) + (5) 54.901 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.03 seconds