Wall clock time and date at job start Wed Apr 1 2020 05:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46496 * 109.47502 * 2 1 4 4 C 1.36743 * 127.14048 * 276.05674 * 3 2 1 5 5 C 1.50702 * 126.34388 * 0.05626 * 4 3 2 6 6 H 1.09003 * 109.47022 * 0.02562 * 5 4 3 7 7 C 1.52995 * 109.47124 * 119.99478 * 5 4 3 8 8 C 1.53001 * 109.47293 * 240.00063 * 5 4 3 9 9 C 1.50700 * 109.47294 * 175.00046 * 8 5 4 10 10 H 1.08000 * 120.00141 * 359.97438 * 9 8 5 11 11 C 1.37871 * 120.00001 * 179.97438 * 9 8 5 12 12 N 1.31517 * 119.99925 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 120.00069 * 179.97438 * 11 9 8 14 14 H 1.48507 * 109.46887 * 60.00099 * 13 11 9 15 15 H 1.48506 * 109.47266 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47360 * 300.00453 * 13 11 9 17 17 N 1.30286 * 107.30869 * 180.02562 * 4 3 2 18 18 N 1.28522 * 110.05676 * 359.73042 * 17 4 3 19 19 C 1.31222 * 109.85882 * 0.45239 * 18 17 4 20 20 N 1.38574 * 126.47529 * 179.82474 * 19 18 17 21 21 C 1.46957 * 110.99954 * 323.47015 * 20 19 18 22 22 C 1.53056 * 109.36473 * 183.18776 * 21 20 19 23 23 N 1.46957 * 109.36586 * 301.59846 * 22 21 20 24 24 C 1.46900 * 110.99914 * 183.18551 * 23 22 21 25 25 C 1.53783 * 113.68568 * 80.93783 * 24 23 22 26 26 C 1.53781 * 87.07806 * 139.98948 * 25 24 23 27 27 C 1.53776 * 113.61256 * 178.47089 * 24 23 22 28 28 C 1.46957 * 110.87931 * 59.32005 * 23 22 21 29 29 C 1.46957 * 111.00130 * 87.26888 * 20 19 18 30 30 H 1.09007 * 109.46860 * 304.89468 * 1 2 3 31 31 H 1.08998 * 109.47371 * 64.89071 * 1 2 3 32 32 H 1.08995 * 109.47366 * 184.89683 * 1 2 3 33 33 H 1.09000 * 109.47191 * 239.99491 * 2 1 3 34 34 H 1.09005 * 109.47429 * 120.00164 * 2 1 3 35 35 H 1.09006 * 109.47405 * 179.97438 * 7 5 4 36 36 H 1.08994 * 109.48128 * 300.00022 * 7 5 4 37 37 H 1.09007 * 109.47149 * 60.00301 * 7 5 4 38 38 H 1.09001 * 109.46777 * 294.99922 * 8 5 4 39 39 H 1.08998 * 109.47002 * 54.99966 * 8 5 4 40 40 H 0.97003 * 119.99818 * 180.02562 * 12 11 9 41 41 H 1.09001 * 109.48932 * 63.22052 * 21 20 19 42 42 H 1.09000 * 109.50596 * 303.16388 * 21 20 19 43 43 H 1.09001 * 109.48600 * 181.62597 * 22 21 20 44 44 H 1.09008 * 109.50388 * 61.57709 * 22 21 20 45 45 H 1.08991 * 112.85215 * 309.67106 * 24 23 22 46 46 H 1.09001 * 113.61105 * 254.53711 * 25 24 23 47 47 H 1.08996 * 113.61958 * 25.44231 * 25 24 23 48 48 H 1.08997 * 113.61497 * 220.01049 * 26 25 24 49 49 H 1.09000 * 113.61306 * 89.11893 * 26 25 24 50 50 H 1.08999 * 113.61525 * 334.48297 * 27 24 23 51 51 H 1.08995 * 113.61805 * 105.38916 * 27 24 23 52 52 H 1.09001 * 109.48932 * 60.64785 * 28 23 22 53 53 H 1.08997 * 109.48775 * 180.70985 * 28 23 22 54 54 H 1.09001 * 109.49299 * 296.77937 * 29 20 19 55 55 H 1.09000 * 109.48887 * 56.82489 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.1852 2.1979 -1.0840 5 6 1.8975 1.8452 -2.5206 6 1 1.5277 0.8213 -2.5764 7 6 0.8398 2.7998 -3.0781 8 6 3.1815 1.9697 -3.3433 9 6 2.9232 1.5000 -4.7518 10 1 1.9416 1.1475 -5.0320 11 6 3.9401 1.5204 -5.6826 12 7 5.1356 1.9492 -5.3412 13 14 3.6202 0.9374 -7.4282 14 1 2.5557 1.7719 -8.0414 15 1 4.8661 1.0596 -8.2271 16 1 3.1841 -0.4819 -7.4041 17 7 2.6383 3.3376 -0.6445 18 7 2.7628 3.2989 0.6341 19 6 2.4019 2.1194 1.0816 20 7 2.4040 1.7039 2.4036 21 6 3.5502 2.2670 3.1308 22 6 3.5609 1.7224 4.5612 23 7 2.2970 2.0711 5.2249 24 6 2.2993 1.6306 6.6263 25 6 3.0437 2.5867 7.5732 26 6 1.9193 2.3288 8.5901 27 6 1.0164 1.9991 7.3899 28 6 1.1508 1.5080 4.4977 29 6 1.1401 2.0526 3.0673 30 1 -0.3633 0.5879 0.8430 31 1 -0.3634 0.4361 -0.9305 32 1 -0.3634 -1.0238 0.0877 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 0.6320 2.5450 -4.1174 36 1 -0.0749 2.7111 -2.4922 37 1 1.2091 3.8239 -3.0224 38 1 3.5021 3.0114 -3.3608 39 1 3.9622 1.3567 -2.8933 40 1 5.8509 1.9638 -5.9962 41 1 3.4667 3.3535 3.1560 42 1 4.4749 1.9848 2.6273 43 1 4.3936 2.1611 5.1110 44 1 3.6720 0.6383 4.5370 45 1 2.5914 0.5869 6.7414 46 1 4.0165 2.2139 7.8939 47 1 3.0807 3.6154 7.2147 48 1 1.6116 3.2205 9.1363 49 1 2.1076 1.4760 9.2422 50 1 0.4991 2.8672 6.9812 51 1 0.3525 1.1521 7.5626 52 1 1.2343 0.4215 4.4725 53 1 0.2264 1.7904 5.0013 54 1 1.0291 3.1367 3.0918 55 1 0.3074 1.6142 2.5172 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647716144.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:24 Heat of formation + Delta-G solvation = 86.390685 kcal Electronic energy + Delta-G solvation = -31674.011085 eV Core-core repulsion = 27747.036332 eV Total energy + Delta-G solvation = -3926.974753 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.238 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -44.04905 -40.84753 -39.01176 -37.20415 -36.54446 -35.27869 -34.16299 -32.16198 -31.51064 -30.44866 -28.91716 -27.67739 -26.68267 -25.93225 -25.03590 -24.56917 -24.38320 -23.58382 -22.14789 -21.05950 -20.38847 -20.22998 -18.64831 -18.46157 -17.72334 -17.18655 -16.81001 -16.48913 -16.23557 -16.03551 -15.90056 -15.69092 -15.36079 -15.06241 -14.94541 -14.83379 -14.35399 -14.02309 -13.78084 -13.66364 -13.56438 -13.27889 -13.21126 -12.97931 -12.83606 -12.71388 -12.66111 -12.61659 -12.42276 -12.34646 -12.28322 -12.25803 -12.15868 -11.93921 -11.58081 -11.53360 -11.47021 -11.26247 -11.19166 -11.09476 -11.04286 -10.53844 -10.34709 -9.63135 -9.32534 -8.15869 -6.27976 0.72701 1.21485 1.44020 1.47581 1.54909 1.79524 2.43869 2.59823 2.84398 3.17883 3.42756 3.58141 3.61918 3.68662 3.83680 3.92272 3.97276 3.99786 4.04755 4.07587 4.09725 4.22783 4.30008 4.30765 4.34365 4.41287 4.46028 4.53394 4.58475 4.63534 4.64852 4.70857 4.82137 4.82528 4.86246 4.91454 4.97861 5.00145 5.07021 5.08722 5.09290 5.12876 5.15510 5.23797 5.35511 5.37136 5.44908 5.48860 5.54219 5.57242 5.69190 5.83381 6.01520 6.14325 6.19895 6.23522 6.87597 7.41201 7.74130 8.96394 Molecular weight = 347.24amu Principal moments of inertia in cm(-1) A = 0.025672 B = 0.002108 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.404751 B =13276.467192 C =13693.653697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.096 3.904 3 N -0.464 5.464 4 C 0.206 3.794 5 C 0.010 3.990 6 H 0.095 0.905 7 C -0.117 4.117 8 C 0.051 3.949 9 C -0.528 4.528 10 H 0.078 0.922 11 C -0.004 4.004 12 N -0.937 5.937 13 Si 0.968 3.032 14 H -0.264 1.264 15 H -0.291 1.291 16 H -0.261 1.261 17 N -0.331 5.331 18 N -0.353 5.353 19 C 0.340 3.660 20 N -0.449 5.449 21 C 0.074 3.926 22 C 0.072 3.928 23 N -0.539 5.539 24 C 0.052 3.948 25 C -0.129 4.129 26 C -0.137 4.137 27 C -0.128 4.128 28 C 0.070 3.930 29 C 0.067 3.933 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.109 0.891 33 H 0.096 0.904 34 H 0.115 0.885 35 H 0.075 0.925 36 H 0.062 0.938 37 H 0.038 0.962 38 H -0.012 1.012 39 H -0.023 1.023 40 H 0.261 0.739 41 H 0.045 0.955 42 H 0.070 0.930 43 H 0.096 0.904 44 H 0.049 0.951 45 H 0.071 0.929 46 H 0.068 0.932 47 H 0.078 0.922 48 H 0.073 0.927 49 H 0.089 0.911 50 H 0.082 0.918 51 H 0.075 0.925 52 H 0.052 0.948 53 H 0.102 0.898 54 H 0.036 0.964 55 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.277 -7.512 27.301 30.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.025 4.025 3 N -0.157 5.157 4 C -0.063 4.063 5 C -0.011 4.011 6 H 0.114 0.886 7 C -0.175 4.175 8 C 0.013 3.987 9 C -0.566 4.566 10 H 0.096 0.904 11 C -0.201 4.201 12 N -0.577 5.577 13 Si 0.793 3.207 14 H -0.189 1.189 15 H -0.217 1.217 16 H -0.186 1.186 17 N -0.169 5.169 18 N -0.197 5.197 19 C -0.017 4.017 20 N -0.175 5.175 21 C -0.054 4.054 22 C -0.057 4.057 23 N -0.264 5.264 24 C -0.056 4.056 25 C -0.167 4.167 26 C -0.174 4.174 27 C -0.165 4.165 28 C -0.058 4.058 29 C -0.060 4.060 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.128 0.872 33 H 0.114 0.886 34 H 0.133 0.867 35 H 0.094 0.906 36 H 0.081 0.919 37 H 0.057 0.943 38 H 0.007 0.993 39 H -0.004 1.004 40 H 0.070 0.930 41 H 0.063 0.937 42 H 0.088 0.912 43 H 0.114 0.886 44 H 0.067 0.933 45 H 0.089 0.911 46 H 0.087 0.913 47 H 0.096 0.904 48 H 0.091 0.909 49 H 0.107 0.893 50 H 0.101 0.899 51 H 0.094 0.906 52 H 0.070 0.930 53 H 0.120 0.880 54 H 0.055 0.945 55 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -11.627 -6.094 27.276 30.271 hybrid contribution 0.415 -1.116 -1.215 1.702 sum -11.211 -7.210 26.061 29.272 Atomic orbital electron populations 1.22132 0.91886 1.04973 1.02589 1.22212 0.97292 0.77072 1.05910 1.46597 1.49263 1.14666 1.05202 1.25351 1.00457 0.87818 0.92652 1.19749 0.98435 1.00625 0.82296 0.88644 1.21579 0.96284 0.98053 1.01566 1.18841 0.90849 0.94988 0.94050 1.21537 0.97289 1.42507 0.95287 0.90419 1.26047 0.94777 0.95507 1.03817 1.70157 1.02943 1.48251 1.36381 0.85452 0.77386 0.79416 0.78487 1.18915 1.21692 1.18575 1.73930 1.18870 1.20977 1.03166 1.74447 1.23548 1.17554 1.04142 1.22565 1.02151 0.87698 0.89332 1.59050 1.06240 1.57581 0.94633 1.22120 0.91216 0.98172 0.93858 1.22043 0.93171 0.99038 0.91403 1.62409 1.02297 1.59363 1.02355 1.23260 0.99143 0.97448 0.85762 1.22950 0.98055 0.99832 0.95817 1.22715 0.96366 1.02313 0.96050 1.22967 0.95660 1.01947 0.95960 1.22069 0.95228 0.97684 0.90809 1.22364 0.89093 0.99376 0.95202 0.92191 0.92463 0.87246 0.88577 0.86660 0.90621 0.91893 0.94257 0.99331 1.00448 0.93002 0.93679 0.91163 0.88627 0.93304 0.91106 0.91281 0.90361 0.90872 0.89270 0.89930 0.90608 0.93026 0.87958 0.94531 0.89325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.68 10.24 71.98 0.74 -1.94 16 2 C 0.10 2.19 6.49 86.38 0.56 2.75 16 3 N -0.46 -15.39 2.81 -514.87 -1.45 -16.83 16 4 C 0.21 8.51 6.58 137.64 0.91 9.42 16 5 C 0.01 0.41 2.71 -11.54 -0.03 0.38 16 6 H 0.10 3.48 7.10 -2.39 -0.02 3.47 16 7 C -0.12 -4.41 8.99 71.98 0.65 -3.76 16 8 C 0.05 2.75 4.43 29.85 0.13 2.89 16 9 C -0.53 -29.00 8.41 25.60 0.22 -28.78 16 10 H 0.08 3.88 7.06 -2.91 -0.02 3.86 16 11 C 0.00 -0.23 5.46 84.65 0.46 0.24 16 12 N -0.94 -58.39 13.29 21.45 0.28 -58.10 16 13 Si 0.97 43.58 29.54 68.60 2.03 45.60 16 14 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 15 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 16 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 17 N -0.33 -15.59 12.18 -49.54 -0.60 -16.20 16 18 N -0.35 -15.09 11.65 -58.00 -0.68 -15.76 16 19 C 0.34 11.62 6.74 260.11 1.75 13.38 16 20 N -0.45 -11.53 4.68 -705.52 -3.30 -14.83 16 21 C 0.07 1.85 5.28 86.31 0.46 2.30 16 22 C 0.07 1.27 5.58 86.31 0.48 1.75 16 23 N -0.54 -8.64 4.67 -867.38 -4.05 -12.69 16 24 C 0.05 0.63 3.20 45.44 0.15 0.77 16 25 C -0.13 -1.49 7.67 31.12 0.24 -1.25 16 26 C -0.14 -1.23 8.08 31.12 0.25 -0.97 16 27 C -0.13 -1.27 6.58 31.12 0.20 -1.06 16 28 C 0.07 1.04 5.43 86.31 0.47 1.51 16 29 C 0.07 1.38 5.55 86.31 0.48 1.86 16 30 H 0.06 1.01 6.92 -2.38 -0.02 0.99 16 31 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.10 2.24 7.51 -2.39 -0.02 2.23 16 34 H 0.12 2.21 8.09 -2.38 -0.02 2.19 16 35 H 0.07 2.81 6.95 -2.38 -0.02 2.80 16 36 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.04 1.63 8.14 -2.38 -0.02 1.61 16 38 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 39 H -0.02 -1.38 8.14 -2.39 -0.02 -1.40 16 40 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 41 H 0.04 1.32 7.98 -2.39 -0.02 1.30 16 42 H 0.07 1.92 8.13 -2.39 -0.02 1.90 16 43 H 0.10 1.51 7.99 -2.39 -0.02 1.49 16 44 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 45 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 46 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 47 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 48 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 49 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 50 H 0.08 0.96 7.99 -2.39 -0.02 0.94 16 51 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 52 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 53 H 0.10 1.20 7.04 -2.39 -0.02 1.19 16 54 H 0.04 0.92 8.14 -2.39 -0.02 0.91 16 55 H 0.09 1.66 6.90 -2.39 -0.02 1.64 16 Total: -1.00 -74.81 427.63 1.18 -73.63 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: 0.84 Total: 15.72 kcal Atomic # 6 Polarization: -8.64 SS G_CDS: 8.11 Total: -0.54 kcal Atomic # 7 Polarization: -124.62 SS G_CDS: -9.79 Total: -134.42 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.60 kcal Total: -74.81 1.18 -73.63 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647716144.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.025 kcal (2) G-P(sol) polarization free energy of solvation -74.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds