Wall clock time and date at job start Wed Apr 1 2020 04:52:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.46894 * 2 1 4 4 C 1.50698 * 109.47029 * 239.99808 * 2 1 3 5 5 H 1.08000 * 119.99892 * 240.00008 * 4 2 1 6 6 C 1.37873 * 120.00192 * 60.00198 * 4 2 1 7 7 N 1.31519 * 120.00137 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00281 * 179.97438 * 6 4 2 9 9 H 1.48508 * 109.47123 * 59.99970 * 8 6 4 10 10 H 1.48500 * 109.47373 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47210 * 300.00056 * 8 6 4 12 12 N 1.46899 * 109.46785 * 119.99708 * 2 1 3 13 13 C 1.46903 * 110.99713 * 176.04589 * 12 2 1 14 14 C 1.38582 * 111.00207 * 299.99833 * 12 2 1 15 15 N 1.31221 * 126.47231 * 339.55136 * 14 12 2 16 16 N 1.28523 * 109.85763 * 180.02562 * 15 14 12 17 17 C 1.30292 * 110.05600 * 0.02562 * 16 15 14 18 18 C 1.50705 * 126.34933 * 179.97438 * 17 16 15 19 19 C 1.53124 * 109.52091 * 59.86833 * 18 17 16 20 20 C 1.53042 * 109.27518 * 182.50480 * 19 18 17 21 21 N 1.46850 * 109.57317 * 59.08557 * 20 19 18 22 22 C 1.46900 * 110.99567 * 174.19158 * 21 20 19 23 23 C 1.46850 * 111.19746 * 298.29014 * 21 20 19 24 24 C 1.53032 * 109.52225 * 61.74435 * 23 21 20 25 25 N 1.36449 * 126.47338 * 159.58670 * 14 12 2 26 26 C 1.46504 * 127.13459 * 359.93877 * 25 14 12 27 27 C 1.53001 * 109.46566 * 270.11814 * 26 25 14 28 28 C 1.53003 * 117.49884 * 244.34066 * 27 26 25 29 29 C 1.52997 * 60.00345 * 252.51578 * 28 27 26 30 30 H 1.08993 * 109.46861 * 300.00501 * 1 2 3 31 31 H 1.09003 * 109.46512 * 60.00383 * 1 2 3 32 32 H 1.08997 * 109.46894 * 179.97438 * 1 2 3 33 33 H 0.96999 * 120.00107 * 180.02562 * 7 6 4 34 34 H 1.09002 * 109.47078 * 177.97911 * 13 12 2 35 35 H 1.09001 * 109.47356 * 297.97486 * 13 12 2 36 36 H 1.08996 * 109.46753 * 57.97586 * 13 12 2 37 37 H 1.09001 * 109.52460 * 179.97438 * 18 17 16 38 38 H 1.08998 * 109.50721 * 302.38911 * 19 18 17 39 39 H 1.08999 * 109.49974 * 62.50260 * 19 18 17 40 40 H 1.09009 * 109.41181 * 299.07291 * 20 19 18 41 41 H 1.08997 * 109.46612 * 179.13565 * 20 19 18 42 42 H 1.09004 * 109.47115 * 184.20999 * 22 21 20 43 43 H 1.08997 * 109.47567 * 304.21018 * 22 21 20 44 44 H 1.09002 * 109.47298 * 64.21366 * 22 21 20 45 45 H 1.09001 * 109.45997 * 301.72149 * 23 21 20 46 46 H 1.09004 * 109.45510 * 181.75728 * 23 21 20 47 47 H 1.09002 * 109.50219 * 180.87935 * 24 23 21 48 48 H 1.09002 * 109.50364 * 60.76170 * 24 23 21 49 49 H 1.08988 * 109.47386 * 30.11908 * 26 25 14 50 50 H 1.09000 * 109.47121 * 150.12320 * 26 25 14 51 51 H 1.08997 * 115.55004 * 30.05588 * 27 26 25 52 52 H 1.09000 * 117.50097 * 0.02562 * 28 27 26 53 53 H 1.09002 * 117.49720 * 145.02423 * 28 27 26 54 54 H 1.09000 * 117.50096 * 252.51561 * 29 28 27 55 55 H 1.09001 * 117.50018 * 107.48979 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6035 8 14 2.3225 -1.1196 -4.0079 9 1 1.8280 -2.5200 -4.0081 10 1 1.8270 -0.4201 -5.2204 11 1 3.8075 -1.1191 -4.0077 12 7 2.0196 -0.6924 1.1995 13 6 3.4851 -0.7945 1.1871 14 6 1.5753 -0.0640 2.3519 15 7 1.1516 1.1739 2.4514 16 7 0.8177 1.4247 3.6670 17 6 1.0075 0.3707 4.4090 18 6 0.7379 0.2588 5.8875 19 6 -0.7446 0.5295 6.1592 20 6 -0.9997 0.4762 7.6672 21 7 -0.1673 1.4798 8.3428 22 6 -0.4869 1.5511 9.7748 23 6 1.2615 1.2114 8.1352 24 6 1.5844 1.2882 6.6413 25 7 1.4964 -0.6153 3.5976 26 6 1.8599 -1.9806 3.9851 27 6 0.6412 -2.8939 3.8383 28 6 0.0777 -3.5300 5.1106 29 6 0.8423 -4.3879 4.1005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8901 32 1 -0.3633 -1.0276 -0.0005 33 1 0.7082 1.1607 -3.4845 34 1 3.8233 -1.2792 2.1030 35 1 3.8010 -1.3838 0.3263 36 1 3.9182 0.2037 1.1229 37 1 0.9933 -0.7441 6.2295 38 1 -1.0096 1.5168 5.7808 39 1 -1.3500 -0.2268 5.6597 40 1 -0.7486 -0.5160 8.0423 41 1 -2.0513 0.6837 7.8652 42 1 0.0899 2.3526 10.2364 43 1 -1.5511 1.7507 9.9001 44 1 -0.2366 0.6029 10.2507 45 1 1.5019 0.2158 8.5081 46 1 1.8521 1.9530 8.6731 47 1 2.6417 1.0736 6.4860 48 1 1.3571 2.2878 6.2708 49 1 2.6626 -2.3396 3.3411 50 1 2.1957 -1.9868 5.0221 51 1 -0.0677 -2.6104 3.0603 52 1 0.5749 -3.2975 6.0523 53 1 -1.0023 -3.6649 5.1700 54 1 0.2654 -5.0871 3.4953 55 1 1.8428 -4.7200 4.3776 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649296696.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:40 Heat of formation + Delta-G solvation = 103.206156 kcal Electronic energy + Delta-G solvation = -32623.622994 eV Core-core repulsion = 28697.377415 eV Total energy + Delta-G solvation = -3926.245580 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.238 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.96596 -39.96395 -38.79870 -38.65867 -35.50522 -35.24805 -34.48417 -31.84104 -31.29868 -30.63146 -28.76428 -27.78371 -27.09238 -26.04649 -24.39620 -24.09414 -23.60471 -23.20917 -22.35674 -21.62557 -21.09276 -20.23668 -18.57261 -18.04715 -17.51357 -17.03475 -16.71230 -16.50082 -16.01538 -15.98391 -15.82803 -15.61644 -15.42896 -15.11534 -14.89762 -14.57819 -14.38378 -14.17560 -13.97636 -13.71529 -13.34689 -13.23354 -13.07776 -12.92524 -12.82222 -12.69895 -12.56511 -12.48074 -12.36521 -12.25704 -12.17823 -12.12681 -12.07596 -12.00022 -11.61485 -11.57240 -11.51613 -11.37249 -11.11281 -10.95972 -10.85823 -10.57491 -10.25801 -9.18267 -9.13651 -8.13315 -6.28984 0.84646 1.33632 1.44732 1.46897 1.54668 1.92469 2.40993 2.81469 2.99974 3.04102 3.17703 3.28395 3.62757 3.65493 3.78618 3.85808 3.94195 4.01877 4.07544 4.15273 4.20560 4.27836 4.38200 4.40677 4.43733 4.51976 4.56639 4.61266 4.62689 4.69484 4.76986 4.77446 4.78485 4.79982 4.90242 4.92213 4.99464 5.00569 5.00834 5.03717 5.10503 5.12143 5.16429 5.19540 5.23884 5.26019 5.41139 5.44097 5.58332 5.64539 5.92491 6.01508 6.15290 6.19170 6.21369 6.61908 6.81246 7.39953 7.90416 8.93625 Molecular weight = 347.24amu Principal moments of inertia in cm(-1) A = 0.015955 B = 0.002896 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.465678 B = 9665.936456 C =10540.144550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.244 3.756 3 H -0.024 1.024 4 C -0.526 4.526 5 H 0.075 0.925 6 C 0.011 3.989 7 N -0.921 5.921 8 Si 0.971 3.029 9 H -0.268 1.268 10 H -0.288 1.288 11 H -0.265 1.265 12 N -0.459 5.459 13 C 0.046 3.954 14 C 0.366 3.634 15 N -0.368 5.368 16 N -0.325 5.325 17 C 0.185 3.815 18 C 0.018 3.982 19 C -0.101 4.101 20 C 0.067 3.933 21 N -0.566 5.566 22 C 0.027 3.973 23 C 0.066 3.934 24 C -0.103 4.103 25 N -0.469 5.469 26 C 0.142 3.858 27 C -0.192 4.192 28 C -0.158 4.158 29 C -0.154 4.154 30 H 0.014 0.986 31 H 0.063 0.937 32 H 0.024 0.976 33 H 0.263 0.737 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.013 0.987 37 H 0.109 0.891 38 H 0.053 0.947 39 H 0.066 0.934 40 H 0.053 0.947 41 H 0.083 0.917 42 H 0.072 0.928 43 H 0.071 0.929 44 H 0.035 0.965 45 H 0.052 0.948 46 H 0.086 0.914 47 H 0.073 0.927 48 H 0.055 0.945 49 H 0.100 0.900 50 H 0.125 0.875 51 H 0.070 0.930 52 H 0.120 0.880 53 H 0.095 0.905 54 H 0.095 0.905 55 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.502 -10.179 26.620 28.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.138 3.862 3 H -0.006 1.006 4 C -0.565 4.565 5 H 0.093 0.907 6 C -0.188 4.188 7 N -0.560 5.560 8 Si 0.795 3.205 9 H -0.192 1.192 10 H -0.213 1.213 11 H -0.190 1.190 12 N -0.184 5.184 13 C -0.101 4.101 14 C 0.008 3.992 15 N -0.212 5.212 16 N -0.164 5.164 17 C -0.084 4.084 18 C -0.003 4.003 19 C -0.140 4.140 20 C -0.060 4.060 21 N -0.291 5.291 22 C -0.120 4.120 23 C -0.062 4.062 24 C -0.142 4.142 25 N -0.164 5.164 26 C 0.021 3.979 27 C -0.211 4.211 28 C -0.195 4.195 29 C -0.191 4.191 30 H 0.033 0.967 31 H 0.082 0.918 32 H 0.043 0.957 33 H 0.072 0.928 34 H 0.100 0.900 35 H 0.111 0.889 36 H 0.031 0.969 37 H 0.127 0.873 38 H 0.072 0.928 39 H 0.084 0.916 40 H 0.071 0.929 41 H 0.102 0.898 42 H 0.091 0.909 43 H 0.090 0.910 44 H 0.054 0.946 45 H 0.071 0.929 46 H 0.104 0.896 47 H 0.091 0.909 48 H 0.074 0.926 49 H 0.118 0.882 50 H 0.143 0.857 51 H 0.089 0.911 52 H 0.138 0.862 53 H 0.114 0.886 54 H 0.113 0.887 55 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 0.778 -8.684 25.840 27.272 hybrid contribution 0.610 -1.008 -1.130 1.633 sum 1.389 -9.692 24.710 26.580 Atomic orbital electron populations 1.21569 0.97892 0.98190 0.99545 1.18897 0.92195 0.90696 0.84421 1.00640 1.21329 1.32192 1.12914 0.90017 0.90741 1.25830 0.95082 0.95619 1.02300 1.70082 1.37282 1.24205 1.24381 0.85419 0.78913 0.78510 0.77628 1.19245 1.21348 1.19013 1.59098 1.11891 1.48889 0.98477 1.22335 0.83813 1.00299 1.03607 1.22897 1.01485 0.88475 0.86319 1.74692 1.21528 1.12457 1.12482 1.73829 1.20605 1.24534 0.97404 1.25261 1.01040 0.85021 0.97046 1.19730 0.97454 1.01766 0.81359 1.21524 0.93599 1.02024 0.96824 1.22012 0.98181 0.93808 0.92042 1.61853 1.05071 1.49212 1.12959 1.22362 1.02341 1.01006 0.86312 1.22037 0.88525 1.00968 0.94653 1.21571 0.98872 0.98677 0.95039 1.46404 1.49910 1.13424 1.06629 1.21686 0.97093 0.75787 1.03371 1.22357 1.00106 0.96480 1.02192 1.23188 1.00806 1.02219 0.93243 1.23035 1.03115 0.90746 1.02252 0.96711 0.91793 0.95653 0.92791 0.89984 0.88879 0.96870 0.87350 0.92779 0.91553 0.92913 0.89849 0.90929 0.91037 0.94636 0.92938 0.89592 0.90851 0.92566 0.88183 0.85686 0.91116 0.86222 0.88642 0.88671 0.86405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -6.36 8.80 71.98 0.63 -5.73 16 2 C 0.24 13.35 1.73 44.17 0.08 13.43 16 3 H -0.02 -1.53 7.91 -2.39 -0.02 -1.55 16 4 C -0.53 -29.00 7.95 25.60 0.20 -28.80 16 5 H 0.07 3.86 6.40 -2.91 -0.02 3.84 16 6 C 0.01 0.61 5.30 84.65 0.45 1.06 16 7 N -0.92 -55.22 11.32 21.45 0.24 -54.98 16 8 Si 0.97 43.43 29.54 68.60 2.03 45.46 16 9 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 10 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 11 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 12 N -0.46 -20.69 4.66 -710.99 -3.31 -24.00 16 13 C 0.05 1.77 9.06 127.69 1.16 2.93 16 14 C 0.37 15.86 6.04 260.11 1.57 17.43 16 15 N -0.37 -18.26 10.01 -58.00 -0.58 -18.84 16 16 N -0.33 -14.07 12.18 -49.54 -0.60 -14.67 16 17 C 0.19 6.04 6.58 137.64 0.91 6.94 16 18 C 0.02 0.38 2.62 -11.46 -0.03 0.35 16 19 C -0.10 -2.18 5.36 30.65 0.16 -2.01 16 20 C 0.07 1.03 5.46 86.33 0.47 1.50 16 21 N -0.57 -9.13 4.91 -922.55 -4.53 -13.66 16 22 C 0.03 0.31 9.59 127.69 1.22 1.53 16 23 C 0.07 0.95 5.46 86.32 0.47 1.42 16 24 C -0.10 -2.07 5.36 30.64 0.16 -1.91 16 25 N -0.47 -15.32 2.81 -514.85 -1.45 -16.76 16 26 C 0.14 3.13 6.16 86.38 0.53 3.66 16 27 C -0.19 -4.18 6.01 -10.79 -0.06 -4.25 16 28 C -0.16 -2.20 10.18 30.59 0.31 -1.89 16 29 C -0.15 -2.35 10.25 30.60 0.31 -2.03 16 30 H 0.01 0.79 6.23 -2.39 -0.01 0.78 16 31 H 0.06 3.88 6.07 -2.39 -0.01 3.86 16 32 H 0.02 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 34 H 0.08 2.43 6.63 -2.39 -0.02 2.41 16 35 H 0.09 3.52 6.31 -2.39 -0.02 3.50 16 36 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 37 H 0.11 1.65 6.94 -2.39 -0.02 1.64 16 38 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16 41 H 0.08 1.19 8.09 -2.39 -0.02 1.17 16 42 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 43 H 0.07 0.75 8.09 -2.39 -0.02 0.73 16 44 H 0.04 0.32 8.14 -2.39 -0.02 0.30 16 45 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 46 H 0.09 1.12 8.12 -2.39 -0.02 1.10 16 47 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 48 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 49 H 0.10 2.20 6.58 -2.39 -0.02 2.19 16 50 H 0.13 1.75 6.96 -2.39 -0.02 1.73 16 51 H 0.07 2.19 8.14 -2.39 -0.02 2.18 16 52 H 0.12 1.06 8.03 -2.39 -0.02 1.04 16 53 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 54 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 55 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -75.82 423.32 1.21 -74.61 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: 0.85 Total: 19.21 kcal Atomic # 6 Polarization: -4.91 SS G_CDS: 8.55 Total: 3.64 kcal Atomic # 7 Polarization: -132.69 SS G_CDS: -10.23 Total: -142.92 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -75.82 1.21 -74.61 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649296696.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.819 kcal (2) G-P(sol) polarization free energy of solvation -75.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds