Wall clock time and date at job start Wed Apr 1 2020 05:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86801 * 119.99858 * 2 1 4 4 H 1.48497 * 109.47239 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47430 * 300.00596 * 3 2 1 6 6 H 1.48501 * 109.47151 * 60.00350 * 3 2 1 7 7 C 1.38796 * 120.00390 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00158 * 179.97438 * 7 2 1 9 9 S 1.76198 * 119.99846 * 359.97438 * 7 2 1 10 10 C 1.80996 * 100.00205 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.47349 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00046 * 0.02562 * 11 10 9 13 13 N 1.34774 * 119.99686 * 180.02562 * 11 10 9 14 14 N 1.40105 * 119.99839 * 180.02562 * 13 11 10 15 15 C 1.39725 * 120.00378 * 180.02562 * 14 13 11 16 16 C 1.38914 * 120.06020 * 359.44494 * 15 14 13 17 17 C 1.38121 * 119.98198 * 179.79110 * 16 15 14 18 18 C 1.38269 * 120.10910 * 0.48589 * 17 16 15 19 19 C 1.38485 * 120.12795 * 359.74873 * 18 17 16 20 20 F 1.35106 * 119.98906 * 179.97438 * 19 18 17 21 21 C 1.38409 * 120.01905 * 0.02562 * 19 18 17 22 22 Br 1.89093 * 120.05513 * 179.97438 * 21 19 18 23 23 H 0.96998 * 120.00669 * 359.97438 * 1 2 3 24 24 H 1.09009 * 109.47187 * 60.00034 * 10 9 7 25 25 H 1.08993 * 109.47257 * 300.00226 * 10 9 7 26 26 H 0.96995 * 120.00764 * 0.02562 * 13 11 10 27 27 H 0.97005 * 119.99838 * 359.72385 * 14 13 11 28 28 H 1.08008 * 120.01205 * 0.02562 * 16 15 14 29 29 H 1.07995 * 119.94153 * 180.21000 * 17 16 15 30 30 H 1.07999 * 119.93180 * 179.76385 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3966 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2019 -0.0010 9 16 1.1294 -2.7279 -0.0005 10 6 2.5159 -3.8913 -0.0021 11 6 1.9875 -5.3027 -0.0017 12 8 0.7912 -5.5023 -0.0009 13 7 2.8444 -6.3430 -0.0022 14 7 2.3531 -7.6551 -0.0024 15 6 3.2414 -8.7337 -0.0023 16 6 4.6118 -8.5066 -0.0138 17 6 5.4884 -9.5739 -0.0094 18 6 5.0042 -10.8691 -0.0037 19 6 3.6389 -11.1008 0.0028 20 9 3.1689 -12.3674 0.0078 21 6 2.7557 -10.0351 0.0031 22 35 0.8913 -10.3503 0.0113 23 1 -0.4851 0.8400 0.0004 24 1 3.1253 -3.7317 0.8875 25 1 3.1238 -3.7309 -0.8924 26 1 3.8011 -6.1834 -0.0025 27 1 1.3963 -7.8148 0.0019 28 1 4.9918 -7.4956 -0.0223 29 1 6.5536 -9.3966 -0.0149 30 1 5.6922 -11.7016 -0.0042 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001651336350.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:16 Heat of formation + Delta-G solvation = -10.816801 kcal Electronic energy + Delta-G solvation = -18727.984062 eV Core-core repulsion = 15225.882315 eV Total energy + Delta-G solvation = -3502.101747 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 347.968 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.29133 -40.24121 -39.01519 -35.98073 -33.12351 -32.52166 -31.86239 -29.92788 -29.49505 -27.71756 -25.57228 -23.30904 -22.67632 -21.00844 -19.02646 -18.04484 -17.61042 -16.60727 -16.44040 -16.29280 -16.08396 -15.38939 -15.20533 -14.88528 -14.32049 -14.11452 -13.86033 -13.58847 -13.48973 -12.71932 -12.49043 -12.38628 -11.80243 -11.62990 -11.25495 -11.13307 -11.12424 -10.85401 -10.58257 -9.93203 -9.87148 -9.61670 -9.15994 -9.08862 -8.37749 -7.64814 -6.62519 -6.30888 -4.03263 0.59439 0.90292 1.25860 1.63813 2.73487 3.09801 3.13582 3.16384 3.24788 3.33419 3.76667 4.00405 4.10400 4.36293 4.42040 4.74269 4.87973 5.04014 5.04926 5.38228 5.44064 5.46279 5.58809 5.65729 5.92490 5.92777 6.21841 6.52114 7.09462 7.43713 7.51249 8.25994 8.31703 9.14702 10.76517 Molecular weight = 347.97amu Principal moments of inertia in cm(-1) A = 0.026361 B = 0.002419 C = 0.002218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.933823 B =11573.873303 C =12620.648742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.074 3.926 3 Si 0.921 3.079 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.538 4.538 8 H 0.075 0.925 9 S -0.050 6.050 10 C -0.145 4.145 11 C 0.533 3.467 12 O -0.509 6.509 13 N -0.533 5.533 14 N -0.524 5.524 15 C 0.277 3.723 16 C -0.210 4.210 17 C -0.019 4.019 18 C -0.214 4.214 19 C 0.183 3.817 20 F -0.123 7.123 21 C -0.217 4.217 22 Br -0.026 7.026 23 H 0.269 0.731 24 H 0.097 0.903 25 H 0.097 0.903 26 H 0.421 0.579 27 H 0.439 0.561 28 H 0.134 0.866 29 H 0.141 0.859 30 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.477 -22.939 -0.001 25.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.135 4.135 3 Si 0.747 3.253 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.686 4.686 8 H 0.094 0.906 9 S 0.176 5.824 10 C -0.296 4.296 11 C 0.319 3.681 12 O -0.381 6.381 13 N -0.284 5.284 14 N -0.247 5.247 15 C 0.166 3.834 16 C -0.234 4.234 17 C -0.038 4.038 18 C -0.236 4.236 19 C 0.161 3.839 20 F -0.101 7.101 21 C -0.304 4.304 22 Br 0.058 6.942 23 H 0.079 0.921 24 H 0.116 0.884 25 H 0.116 0.884 26 H 0.263 0.737 27 H 0.285 0.715 28 H 0.151 0.849 29 H 0.159 0.841 30 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 8.585 -23.069 0.000 24.615 hybrid contribution 2.311 1.104 0.006 2.561 sum 10.896 -21.965 0.005 24.519 Atomic orbital electron populations 1.70012 1.05990 1.27565 1.46576 1.25004 0.95050 0.99130 0.94364 0.86085 0.79555 0.81692 0.77971 1.19550 1.20515 1.20511 1.22892 0.95010 0.91377 1.59347 0.90649 1.85519 1.03923 0.96201 1.96773 1.23485 1.07373 0.93077 1.05706 1.20730 0.86501 0.85220 0.75622 1.90751 1.15001 1.84853 1.47464 1.45223 1.09870 0.94314 1.78954 1.43810 1.08056 0.93460 1.79402 1.17061 0.89889 0.84571 0.91880 1.20526 0.89989 1.00467 1.12398 1.20837 1.00036 0.90780 0.92143 1.20876 0.92487 0.98839 1.11377 1.16990 0.91481 0.77898 0.97554 1.91556 1.89160 1.36302 1.93112 1.21005 0.91702 0.93284 1.24369 1.96753 1.03350 1.95995 1.98067 0.92090 0.88442 0.88432 0.73673 0.71455 0.84854 0.84096 0.84092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.37 13.22 55.49 0.73 -24.64 16 2 C 0.07 2.04 5.49 -17.43 -0.10 1.95 16 3 Si 0.92 20.67 29.55 -169.99 -5.02 15.65 16 4 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 5 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 6 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.54 -14.61 9.50 30.94 0.29 -14.32 16 8 H 0.08 1.92 7.80 -52.49 -0.41 1.51 16 9 S -0.05 -1.29 20.57 -107.50 -2.21 -3.50 16 10 C -0.14 -2.62 6.16 36.01 0.22 -2.40 16 11 C 0.53 9.18 7.96 -10.99 -0.09 9.09 16 12 O -0.51 -10.87 15.70 5.56 0.09 -10.79 16 13 N -0.53 -6.77 6.22 31.22 0.19 -6.58 16 14 N -0.52 -6.73 6.40 32.42 0.21 -6.52 16 15 C 0.28 3.02 6.71 -83.76 -0.56 2.46 16 16 C -0.21 -1.73 9.48 -39.37 -0.37 -2.10 16 17 C -0.02 -0.12 10.04 -39.61 -0.40 -0.52 16 18 C -0.21 -1.63 10.02 -39.48 -0.40 -2.03 16 19 C 0.18 1.84 7.26 -39.43 -0.29 1.55 16 20 F -0.12 -1.31 16.73 2.25 0.04 -1.28 16 21 C -0.22 -2.42 6.25 -39.27 -0.25 -2.67 16 22 Br -0.03 -0.31 31.70 -68.01 -2.16 -2.46 16 23 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 24 H 0.10 1.58 8.14 -51.91 -0.42 1.15 16 25 H 0.10 1.58 8.14 -51.92 -0.42 1.16 16 26 H 0.42 3.80 6.60 -182.60 -1.21 2.59 16 27 H 0.44 6.26 6.40 -182.59 -1.17 5.09 16 28 H 0.13 0.83 6.20 -52.48 -0.33 0.50 16 29 H 0.14 0.50 8.06 -52.49 -0.42 0.08 16 30 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 LS Contribution 308.00 15.07 4.64 4.64 Total: -1.00 -32.76 308.00 -9.35 -42.11 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -3.93 Total: 2.35 kcal Atomic # 6 Polarization: -7.06 SS G_CDS: -1.93 Total: -8.99 kcal Atomic # 7 Polarization: -38.87 SS G_CDS: 1.14 Total: -37.73 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: 0.09 Total: -10.79 kcal Atomic # 9 Polarization: -1.31 SS G_CDS: 0.04 Total: -1.28 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Atomic # 16 Polarization: -1.29 SS G_CDS: -2.21 Total: -3.50 kcal Atomic # 35 Polarization: -0.31 SS G_CDS: -2.16 Total: -2.46 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -32.76 -9.35 -42.11 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001651336350.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.292 kcal (2) G-P(sol) polarization free energy of solvation -32.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds