Wall clock time and date at job start Wed Apr 1 2020 05:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86801 * 119.99858 * 2 1 4 4 H 1.48497 * 109.47239 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47430 * 300.00596 * 3 2 1 6 6 H 1.48501 * 109.47151 * 60.00350 * 3 2 1 7 7 C 1.38796 * 120.00390 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00158 * 179.97438 * 7 2 1 9 9 S 1.76198 * 119.99846 * 359.97438 * 7 2 1 10 10 C 1.80996 * 100.00205 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.47349 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00046 * 0.02562 * 11 10 9 13 13 N 1.34774 * 119.99686 * 180.02562 * 11 10 9 14 14 N 1.40105 * 119.99839 * 180.02562 * 13 11 10 15 15 C 1.39725 * 120.00378 * 180.02562 * 14 13 11 16 16 C 1.38914 * 120.06020 * 359.44494 * 15 14 13 17 17 C 1.38121 * 119.98198 * 179.79110 * 16 15 14 18 18 C 1.38269 * 120.10910 * 0.48589 * 17 16 15 19 19 C 1.38485 * 120.12795 * 359.74873 * 18 17 16 20 20 F 1.35106 * 119.98906 * 179.97438 * 19 18 17 21 21 C 1.38409 * 120.01905 * 0.02562 * 19 18 17 22 22 Br 1.89093 * 120.05513 * 179.97438 * 21 19 18 23 23 H 0.96998 * 120.00669 * 359.97438 * 1 2 3 24 24 H 1.09009 * 109.47187 * 60.00034 * 10 9 7 25 25 H 1.08993 * 109.47257 * 300.00226 * 10 9 7 26 26 H 0.96995 * 120.00764 * 0.02562 * 13 11 10 27 27 H 0.97005 * 119.99838 * 359.72385 * 14 13 11 28 28 H 1.08008 * 120.01205 * 0.02562 * 16 15 14 29 29 H 1.07995 * 119.94153 * 180.21000 * 17 16 15 30 30 H 1.07999 * 119.93180 * 179.76385 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3966 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2019 -0.0010 9 16 1.1294 -2.7279 -0.0005 10 6 2.5159 -3.8913 -0.0021 11 6 1.9875 -5.3027 -0.0017 12 8 0.7912 -5.5023 -0.0009 13 7 2.8444 -6.3430 -0.0022 14 7 2.3531 -7.6551 -0.0024 15 6 3.2414 -8.7337 -0.0023 16 6 4.6118 -8.5066 -0.0138 17 6 5.4884 -9.5739 -0.0094 18 6 5.0042 -10.8691 -0.0037 19 6 3.6389 -11.1008 0.0028 20 9 3.1689 -12.3674 0.0078 21 6 2.7557 -10.0351 0.0031 22 35 0.8913 -10.3503 0.0113 23 1 -0.4851 0.8400 0.0004 24 1 3.1253 -3.7317 0.8875 25 1 3.1238 -3.7309 -0.8924 26 1 3.8011 -6.1834 -0.0025 27 1 1.3963 -7.8148 0.0019 28 1 4.9918 -7.4956 -0.0223 29 1 6.5536 -9.3966 -0.0149 30 1 5.6922 -11.7016 -0.0042 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001651336350.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:16 Heat of formation + Delta-G solvation = -32.385908 kcal Electronic energy + Delta-G solvation = -18728.919369 eV Core-core repulsion = 15225.882315 eV Total energy + Delta-G solvation = -3503.037053 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 347.968 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -50.05646 -41.26172 -40.04889 -37.01712 -34.57560 -34.02531 -32.85200 -30.93669 -30.38073 -28.73268 -27.62159 -24.10653 -23.45902 -22.14784 -20.19853 -19.49133 -18.83190 -17.67497 -17.30804 -17.02375 -16.89687 -16.86804 -16.66203 -16.14083 -16.05107 -15.03580 -14.80389 -14.73965 -14.53242 -14.23456 -13.76174 -13.15895 -13.00964 -12.91656 -12.71126 -12.60805 -12.47473 -12.01337 -11.72885 -11.44090 -11.30958 -11.15136 -10.54626 -10.27470 -9.81934 -8.68710 -8.53912 -8.34165 -6.12218 -0.09960 0.19057 0.42736 0.58260 1.35851 1.41693 1.43714 1.53992 1.65660 2.26998 2.46092 2.85237 3.01117 3.10953 3.31142 3.68152 3.78276 3.83254 4.20201 4.27327 4.37175 4.49016 4.69908 4.80777 5.04655 5.27692 5.37994 5.44605 5.73130 6.05514 6.21430 6.40337 7.08046 7.13422 8.75090 Molecular weight = 347.97amu Principal moments of inertia in cm(-1) A = 0.026361 B = 0.002419 C = 0.002218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.933823 B =11573.873303 C =12620.648742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.012 3.988 3 Si 0.999 3.001 4 H -0.253 1.253 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.543 4.543 8 H 0.089 0.911 9 S -0.146 6.146 10 C -0.118 4.118 11 C 0.535 3.465 12 O -0.560 6.560 13 N -0.505 5.505 14 N -0.540 5.540 15 C 0.256 3.744 16 C -0.205 4.205 17 C -0.007 4.007 18 C -0.199 4.199 19 C 0.161 3.839 20 F -0.132 7.132 21 C -0.230 4.230 22 Br -0.045 7.045 23 H 0.270 0.730 24 H 0.124 0.876 25 H 0.124 0.876 26 H 0.441 0.559 27 H 0.429 0.571 28 H 0.157 0.843 29 H 0.184 0.816 30 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.661 -23.205 -0.011 27.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.192 4.192 3 Si 0.821 3.179 4 H -0.176 1.176 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.690 4.690 8 H 0.107 0.893 9 S 0.081 5.919 10 C -0.271 4.271 11 C 0.321 3.679 12 O -0.436 6.436 13 N -0.256 5.256 14 N -0.265 5.265 15 C 0.148 3.852 16 C -0.229 4.229 17 C -0.025 4.025 18 C -0.221 4.221 19 C 0.139 3.861 20 F -0.110 7.110 21 C -0.316 4.316 22 Br 0.039 6.961 23 H 0.079 0.921 24 H 0.142 0.858 25 H 0.142 0.858 26 H 0.287 0.713 27 H 0.274 0.726 28 H 0.175 0.825 29 H 0.201 0.799 30 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 12.868 -23.398 -0.010 26.703 hybrid contribution 1.174 0.948 0.008 1.509 sum 14.042 -22.450 -0.002 26.480 Atomic orbital electron populations 1.70184 1.08035 1.28549 1.48166 1.26124 0.95920 1.03374 0.93821 0.84902 0.78819 0.76360 0.77853 1.17632 1.20244 1.20236 1.23253 0.95575 0.91638 1.58580 0.89287 1.85733 1.09907 0.99184 1.97105 1.23256 1.04086 0.91530 1.08206 1.20427 0.86047 0.85784 0.75641 1.90741 1.17161 1.85464 1.50227 1.44672 1.10138 0.94043 1.76715 1.43852 1.08045 0.93312 1.81245 1.17311 0.90752 0.83739 0.93364 1.20948 0.88806 1.02361 1.10767 1.21334 1.01841 0.89547 0.89816 1.21315 0.91550 1.00426 1.08783 1.17296 0.92475 0.77348 0.98977 1.91533 1.89432 1.36721 1.93348 1.21175 0.91024 0.94080 1.25342 1.96726 1.05153 1.96026 1.98153 0.92062 0.85788 0.85778 0.71316 0.72616 0.82522 0.79905 0.81471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.70 13.22 21.65 0.29 -54.42 16 2 C 0.01 0.68 5.49 84.86 0.47 1.14 16 3 Si 1.00 41.99 29.55 68.60 2.03 44.01 16 4 H -0.25 -9.76 7.11 99.48 0.71 -9.06 16 5 H -0.28 -11.42 7.11 99.48 0.71 -10.71 16 6 H -0.28 -11.41 7.11 99.48 0.71 -10.70 16 7 C -0.54 -29.31 9.50 67.95 0.65 -28.66 16 8 H 0.09 4.38 7.80 -2.91 -0.02 4.35 16 9 S -0.15 -7.65 20.57 -56.49 -1.16 -8.82 16 10 C -0.12 -4.13 6.16 71.24 0.44 -3.69 16 11 C 0.53 18.07 7.96 87.66 0.70 18.77 16 12 O -0.56 -24.62 15.70 -3.03 -0.05 -24.67 16 13 N -0.51 -11.90 6.22 -173.53 -1.08 -12.98 16 14 N -0.54 -13.45 6.40 -51.34 -0.33 -13.78 16 15 C 0.26 5.16 6.71 38.21 0.26 5.41 16 16 C -0.21 -2.60 9.48 22.40 0.21 -2.39 16 17 C -0.01 -0.06 10.04 22.25 0.22 0.17 16 18 C -0.20 -2.30 10.02 22.34 0.22 -2.08 16 19 C 0.16 2.98 7.26 22.37 0.16 3.14 16 20 F -0.13 -2.72 16.73 44.97 0.75 -1.97 16 21 C -0.23 -4.97 6.25 22.47 0.14 -4.83 16 22 Br -0.05 -1.09 31.70 -20.37 -0.65 -1.73 16 23 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 24 H 0.12 3.68 8.14 -2.39 -0.02 3.66 16 25 H 0.12 3.68 8.14 -2.40 -0.02 3.66 16 26 H 0.44 6.43 6.60 -213.32 -1.41 5.03 16 27 H 0.43 12.53 6.40 -213.31 -1.36 11.17 16 28 H 0.16 1.18 6.20 -2.91 -0.02 1.16 16 29 H 0.18 0.07 8.06 -2.91 -0.02 0.05 16 30 H 0.17 1.06 8.06 -2.91 -0.02 1.04 16 Total: -1.00 -75.15 308.00 1.72 -73.43 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: -1.55 Total: 13.94 kcal Atomic # 6 Polarization: -16.49 SS G_CDS: 3.47 Total: -13.02 kcal Atomic # 7 Polarization: -80.06 SS G_CDS: -1.12 Total: -81.18 kcal Atomic # 8 Polarization: -24.62 SS G_CDS: -0.05 Total: -24.67 kcal Atomic # 9 Polarization: -2.72 SS G_CDS: 0.75 Total: -1.97 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.01 kcal Atomic # 16 Polarization: -7.65 SS G_CDS: -1.16 Total: -8.82 kcal Atomic # 35 Polarization: -1.09 SS G_CDS: -0.65 Total: -1.73 kcal Total: -75.15 1.72 -73.43 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001651336350.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.042 kcal (2) G-P(sol) polarization free energy of solvation -75.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds