Wall clock time and date at job start Wed Apr 1 2020 05:36:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34230 * 116.99659 * 2 1 4 4 O 1.20828 * 120.00155 * 359.97438 * 3 2 1 5 5 C 1.50693 * 119.99688 * 180.02562 * 3 2 1 6 6 N 1.46505 * 109.46887 * 179.97438 * 5 3 2 7 7 C 1.36940 * 119.99932 * 85.89014 * 6 5 3 8 8 H 1.08004 * 119.99900 * 214.64160 * 7 6 5 9 9 C 1.38812 * 120.00395 * 34.90814 * 7 6 5 10 10 N 1.31615 * 120.00671 * 214.99373 * 9 7 6 11 11 Si 1.86799 * 119.99554 * 34.99457 * 9 7 6 12 12 H 1.48502 * 109.47102 * 94.14635 * 11 9 7 13 13 H 1.48503 * 109.47188 * 214.14459 * 11 9 7 14 14 H 1.48505 * 109.47561 * 334.14517 * 11 9 7 15 15 S 1.65595 * 120.00095 * 265.88515 * 6 5 3 16 16 O 1.42092 * 106.40412 * 29.78277 * 15 6 5 17 17 O 1.42104 * 106.40243 * 162.70864 * 15 6 5 18 18 C 1.76205 * 107.21936 * 276.24413 * 15 6 5 19 19 C 1.38605 * 120.42538 * 113.18459 * 18 15 6 20 20 C 1.38664 * 118.43815 * 180.02562 * 19 18 15 21 21 C 1.50703 * 120.40363 * 180.02562 * 20 19 18 22 22 C 1.38189 * 119.19081 * 0.02562 * 20 19 18 23 23 N 1.31876 * 120.78475 * 0.02562 * 22 20 19 24 24 C 1.31979 * 121.70034 * 359.70721 * 23 22 20 25 25 Cl 1.73605 * 119.63259 * 180.28976 * 24 23 22 26 26 H 1.09005 * 109.47141 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47305 * 300.00305 * 1 2 3 28 28 H 1.08999 * 109.47432 * 60.00862 * 1 2 3 29 29 H 1.09002 * 109.47907 * 59.99588 * 5 3 2 30 30 H 1.09000 * 109.46975 * 299.99372 * 5 3 2 31 31 H 0.96995 * 120.00575 * 180.02562 * 10 9 7 32 32 H 1.08002 * 120.77810 * 359.97438 * 19 18 15 33 33 H 1.09002 * 109.46685 * 90.00497 * 21 20 19 34 34 H 1.09003 * 109.47103 * 209.99421 * 21 20 19 35 35 H 1.09000 * 109.47186 * 330.00134 * 21 20 19 36 36 H 1.08004 * 119.60686 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5662 1.2749 -0.0006 6 7 3.9815 2.6799 -0.0011 7 6 4.0945 3.3608 1.1816 8 1 3.8458 4.4109 1.2260 9 6 4.5341 2.7029 2.3221 10 7 4.0435 3.0274 3.4995 11 14 5.8222 1.3569 2.1858 12 1 7.1706 1.9377 2.4091 13 1 5.5575 0.3131 3.2083 14 1 5.7627 0.7499 0.8318 15 16 4.3144 3.4444 -1.4318 16 8 3.4975 2.8264 -2.4165 17 8 4.2825 4.8386 -1.1587 18 6 5.9809 3.0582 -1.8541 19 6 6.2608 2.2793 -2.9659 20 6 7.5869 2.0003 -3.2598 21 6 7.9417 1.1583 -4.4583 22 6 8.5792 2.5038 -2.4403 23 7 8.2772 3.2410 -1.3894 24 6 7.0270 3.5312 -1.0820 25 17 6.6910 4.5128 0.3100 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 3.9557 0.7809 -0.8908 30 1 3.9562 0.7807 0.8892 31 1 4.3510 2.5680 4.2965 32 1 5.4647 1.8980 -3.5882 33 1 8.0768 1.8022 -5.3274 34 1 8.8664 0.6162 -4.2605 35 1 7.1385 0.4478 -4.6537 36 1 9.6144 2.2910 -2.6632 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001660320756.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:44 Heat of formation + Delta-G solvation = -101.207996 kcal Electronic energy + Delta-G solvation = -27702.196363 eV Core-core repulsion = 23534.062951 eV Total energy + Delta-G solvation = -4168.133412 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 348.042 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.00949 -39.83105 -36.56052 -36.34955 -35.80200 -35.28681 -34.53661 -33.43305 -32.47619 -31.83317 -28.76310 -27.15648 -26.58483 -24.38161 -23.84433 -22.31115 -20.91223 -18.63729 -17.59056 -17.57116 -17.18448 -17.01675 -16.64948 -16.06711 -15.72523 -15.62964 -15.38302 -14.57520 -14.13094 -13.86435 -13.41003 -13.29944 -13.19193 -13.11288 -13.02654 -12.86160 -12.79212 -12.19514 -12.09633 -11.71273 -11.50810 -11.27255 -11.03569 -10.93502 -10.75888 -10.62752 -10.53602 -10.42610 -10.32772 -10.26919 -10.01096 -9.90326 -9.36707 -9.23363 -8.65488 -8.45219 -7.03960 -4.24756 0.79546 1.21850 1.39367 2.23771 2.80361 2.88612 2.95106 3.07472 3.19074 3.58847 3.73545 3.97416 4.40579 4.62659 4.68120 4.84747 4.92090 5.02092 5.23013 5.32591 5.37183 5.43077 5.44641 5.50454 5.56523 5.69394 5.72776 5.79707 5.80089 5.95829 6.13274 6.53397 6.57602 6.88378 7.09312 7.78589 7.99133 8.38818 8.53777 8.62911 10.00054 Molecular weight = 348.04amu Principal moments of inertia in cm(-1) A = 0.011384 B = 0.006454 C = 0.005302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2458.927289 B = 4337.328439 C = 5280.068091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.370 6.370 3 C 0.450 3.550 4 O -0.475 6.475 5 C 0.141 3.859 6 N -0.799 5.799 7 C -0.217 4.217 8 H 0.134 0.866 9 C 0.075 3.925 10 N -0.780 5.780 11 Si 0.833 3.167 12 H -0.255 1.255 13 H -0.268 1.268 14 H -0.250 1.250 15 S 2.504 3.496 16 O -0.995 6.995 17 O -0.952 6.952 18 C -0.699 4.699 19 C 0.012 3.988 20 C -0.169 4.169 21 C -0.105 4.105 22 C 0.140 3.860 23 N -0.493 5.493 24 C 0.243 3.757 25 Cl 0.019 6.981 26 H 0.094 0.906 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.107 0.893 30 H 0.104 0.896 31 H 0.288 0.712 32 H 0.152 0.848 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.356 -8.639 -6.920 11.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.287 6.287 3 C 0.288 3.712 4 O -0.359 6.359 5 C 0.012 3.988 6 N -0.620 5.620 7 C -0.371 4.371 8 H 0.151 0.849 9 C -0.145 4.145 10 N -0.414 5.414 11 Si 0.655 3.345 12 H -0.180 1.180 13 H -0.193 1.193 14 H -0.174 1.174 15 S 2.606 3.394 16 O -0.985 6.985 17 O -0.941 6.941 18 C -0.775 4.775 19 C -0.014 4.014 20 C -0.171 4.171 21 C -0.162 4.162 22 C -0.017 4.017 23 N -0.204 5.204 24 C 0.078 3.922 25 Cl 0.048 6.952 26 H 0.113 0.887 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.125 0.875 30 H 0.121 0.879 31 H 0.099 0.901 32 H 0.170 0.830 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 4.301 -7.382 -6.966 11.024 hybrid contribution 0.778 -1.095 -0.283 1.373 sum 5.080 -8.476 -7.250 12.256 Atomic orbital electron populations 1.23155 0.77280 1.02835 1.02494 1.86474 1.22821 1.34280 1.85129 1.24345 0.92477 0.81386 0.72982 1.90645 1.66296 1.36101 1.42817 1.20797 0.87509 0.85612 1.04890 1.53981 1.67340 1.18478 1.22213 1.19477 1.36864 0.99191 0.81566 0.84904 1.25822 0.95903 0.97880 0.94929 1.69953 1.33823 1.38248 0.99335 0.87594 0.84575 0.82212 0.80143 1.18013 1.19299 1.17391 1.13354 0.74587 0.76660 0.74768 1.93328 1.66552 1.77364 1.61224 1.93412 1.86045 1.30963 1.83722 1.33199 1.30689 1.09828 1.03821 1.21272 0.96668 0.90754 0.92716 1.21038 0.94557 1.01859 0.99691 1.20683 1.02430 0.98520 0.94593 1.22687 0.99530 0.91060 0.88470 1.67189 1.20669 1.14674 1.17915 1.21456 0.89017 0.91224 0.90490 1.98526 1.92934 1.67010 1.36732 0.88748 0.92031 0.92160 0.87527 0.87850 0.90122 0.83007 0.90895 0.91163 0.91027 0.82131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.50 10.56 101.05 1.07 1.56 16 2 O -0.37 -6.39 10.57 -39.26 -0.41 -6.81 16 3 C 0.45 9.33 8.00 36.00 0.29 9.62 16 4 O -0.48 -11.36 16.11 -18.75 -0.30 -11.66 16 5 C 0.14 2.83 4.46 -5.19 -0.02 2.81 16 6 N -0.80 -18.32 2.00 -61.08 -0.12 -18.44 16 7 C -0.22 -5.30 6.83 -15.06 -0.10 -5.40 16 8 H 0.13 3.55 7.54 -52.48 -0.40 3.16 16 9 C 0.08 1.76 5.08 -17.43 -0.09 1.67 16 10 N -0.78 -18.86 13.97 55.49 0.78 -18.08 16 11 Si 0.83 17.19 25.81 -169.99 -4.39 12.80 16 12 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 13 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 14 H -0.25 -4.78 5.82 56.52 0.33 -4.45 16 15 S 2.50 58.32 5.06 -107.50 -0.54 57.78 16 16 O -1.00 -23.68 16.27 -57.17 -0.93 -24.61 16 17 O -0.95 -24.60 15.17 -57.17 -0.87 -25.47 16 18 C -0.70 -14.32 5.94 -39.40 -0.23 -14.55 16 19 C 0.01 0.21 9.35 -39.29 -0.37 -0.16 16 20 C -0.17 -2.38 5.90 -104.48 -0.62 -2.99 16 21 C -0.10 -0.99 10.04 36.01 0.36 -0.63 16 22 C 0.14 2.07 10.86 -17.55 -0.19 1.88 16 23 N -0.49 -9.26 10.34 -10.36 -0.11 -9.37 16 24 C 0.24 5.07 7.26 -17.45 -0.13 4.94 16 25 Cl 0.02 0.41 23.84 -51.86 -1.24 -0.82 16 26 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.06 0.84 8.13 -51.93 -0.42 0.42 16 28 H 0.06 0.82 8.13 -51.93 -0.42 0.39 16 29 H 0.11 1.81 7.81 -51.93 -0.41 1.41 16 30 H 0.10 1.96 3.99 -51.93 -0.21 1.75 16 31 H 0.29 6.32 8.31 -40.82 -0.34 5.98 16 32 H 0.15 2.33 7.44 -52.49 -0.39 1.94 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 35 H 0.07 0.62 8.10 -51.93 -0.42 0.20 16 36 H 0.16 1.70 8.06 -52.48 -0.42 1.28 16 LS Contribution 335.32 15.07 5.05 5.05 Total: -1.00 -31.24 335.32 -6.68 -37.92 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -3.56 Total: 2.96 kcal Atomic # 6 Polarization: -1.21 SS G_CDS: -0.03 Total: -1.24 kcal Atomic # 7 Polarization: -46.44 SS G_CDS: 0.55 Total: -45.90 kcal Atomic # 8 Polarization: -66.04 SS G_CDS: -2.51 Total: -68.55 kcal Atomic # 14 Polarization: 17.19 SS G_CDS: -4.39 Total: 12.80 kcal Atomic # 16 Polarization: 58.32 SS G_CDS: -0.54 Total: 57.78 kcal Atomic # 17 Polarization: 0.41 SS G_CDS: -1.24 Total: -0.82 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.24 -6.68 -37.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001660320756.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.291 kcal (2) G-P(sol) polarization free energy of solvation -31.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds