Wall clock time and date at job start Wed Apr 1 2020 05:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34230 * 116.99659 * 2 1 4 4 O 1.20828 * 120.00155 * 359.97438 * 3 2 1 5 5 C 1.50693 * 119.99688 * 180.02562 * 3 2 1 6 6 N 1.46505 * 109.46887 * 179.97438 * 5 3 2 7 7 C 1.36940 * 119.99932 * 85.89014 * 6 5 3 8 8 H 1.08004 * 119.99900 * 214.64160 * 7 6 5 9 9 C 1.38812 * 120.00395 * 34.90814 * 7 6 5 10 10 N 1.31615 * 120.00671 * 214.99373 * 9 7 6 11 11 Si 1.86799 * 119.99554 * 34.99457 * 9 7 6 12 12 H 1.48502 * 109.47102 * 94.14635 * 11 9 7 13 13 H 1.48503 * 109.47188 * 214.14459 * 11 9 7 14 14 H 1.48505 * 109.47561 * 334.14517 * 11 9 7 15 15 S 1.65595 * 120.00095 * 265.88515 * 6 5 3 16 16 O 1.42092 * 106.40412 * 29.78277 * 15 6 5 17 17 O 1.42104 * 106.40243 * 162.70864 * 15 6 5 18 18 C 1.76205 * 107.21936 * 276.24413 * 15 6 5 19 19 C 1.38605 * 120.42538 * 113.18459 * 18 15 6 20 20 C 1.38664 * 118.43815 * 180.02562 * 19 18 15 21 21 C 1.50703 * 120.40363 * 180.02562 * 20 19 18 22 22 C 1.38189 * 119.19081 * 0.02562 * 20 19 18 23 23 N 1.31876 * 120.78475 * 0.02562 * 22 20 19 24 24 C 1.31979 * 121.70034 * 359.70721 * 23 22 20 25 25 Cl 1.73605 * 119.63259 * 180.28976 * 24 23 22 26 26 H 1.09005 * 109.47141 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47305 * 300.00305 * 1 2 3 28 28 H 1.08999 * 109.47432 * 60.00862 * 1 2 3 29 29 H 1.09002 * 109.47907 * 59.99588 * 5 3 2 30 30 H 1.09000 * 109.46975 * 299.99372 * 5 3 2 31 31 H 0.96995 * 120.00575 * 180.02562 * 10 9 7 32 32 H 1.08002 * 120.77810 * 359.97438 * 19 18 15 33 33 H 1.09002 * 109.46685 * 90.00497 * 21 20 19 34 34 H 1.09003 * 109.47103 * 209.99421 * 21 20 19 35 35 H 1.09000 * 109.47186 * 330.00134 * 21 20 19 36 36 H 1.08004 * 119.60686 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5662 1.2749 -0.0006 6 7 3.9815 2.6799 -0.0011 7 6 4.0945 3.3608 1.1816 8 1 3.8458 4.4109 1.2260 9 6 4.5341 2.7029 2.3221 10 7 4.0435 3.0274 3.4995 11 14 5.8222 1.3569 2.1858 12 1 7.1706 1.9377 2.4091 13 1 5.5575 0.3131 3.2083 14 1 5.7627 0.7499 0.8318 15 16 4.3144 3.4444 -1.4318 16 8 3.4975 2.8264 -2.4165 17 8 4.2825 4.8386 -1.1587 18 6 5.9809 3.0582 -1.8541 19 6 6.2608 2.2793 -2.9659 20 6 7.5869 2.0003 -3.2598 21 6 7.9417 1.1583 -4.4583 22 6 8.5792 2.5038 -2.4403 23 7 8.2772 3.2410 -1.3894 24 6 7.0270 3.5312 -1.0820 25 17 6.6910 4.5128 0.3100 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 3.9557 0.7809 -0.8908 30 1 3.9562 0.7807 0.8892 31 1 4.3510 2.5680 4.2965 32 1 5.4647 1.8980 -3.5882 33 1 8.0768 1.8022 -5.3274 34 1 8.8664 0.6162 -4.2605 35 1 7.1385 0.4478 -4.6537 36 1 9.6144 2.2910 -2.6632 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001660320756.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:43 Heat of formation + Delta-G solvation = -124.478380 kcal Electronic energy + Delta-G solvation = -27703.205443 eV Core-core repulsion = 23534.062951 eV Total energy + Delta-G solvation = -4169.142492 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 348.042 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.38512 -41.34907 -38.14172 -38.08095 -37.55893 -36.94134 -36.50861 -34.63176 -34.20388 -33.20812 -30.27558 -28.18788 -27.92274 -26.10646 -25.22841 -23.61658 -22.46153 -20.40024 -19.31047 -19.14082 -18.76577 -18.53343 -18.09110 -17.61907 -17.29682 -17.13582 -17.00658 -16.13349 -15.70565 -15.07185 -15.00668 -14.83528 -14.59522 -14.55013 -14.39452 -14.05350 -13.90343 -13.69207 -13.14065 -13.10654 -13.02968 -12.92103 -12.86274 -12.72913 -12.53120 -12.24643 -12.20423 -12.05859 -11.83425 -11.71320 -11.69211 -11.34372 -10.99368 -10.74507 -10.19401 -9.94777 -8.76309 -6.07066 -0.64496 -0.35561 -0.09277 0.73521 1.17288 1.26455 1.35697 1.40768 1.72918 2.04787 2.17114 2.38108 2.67845 3.00906 3.36841 3.46439 3.70351 3.80797 3.90399 3.94289 3.98762 4.06790 4.15834 4.38849 4.40183 4.54654 4.67111 4.72383 4.83946 4.88838 5.07341 5.10024 5.39590 5.40414 5.46025 6.13441 6.45323 6.74349 6.81637 6.91011 8.34194 Molecular weight = 348.04amu Principal moments of inertia in cm(-1) A = 0.011384 B = 0.006454 C = 0.005302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2458.927289 B = 4337.328439 C = 5280.068091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.362 6.362 3 C 0.449 3.551 4 O -0.519 6.519 5 C 0.127 3.873 6 N -0.812 5.812 7 C -0.245 4.245 8 H 0.088 0.912 9 C 0.055 3.945 10 N -0.829 5.829 11 Si 0.867 3.133 12 H -0.265 1.265 13 H -0.253 1.253 14 H -0.224 1.224 15 S 2.542 3.458 16 O -1.002 7.002 17 O -0.987 6.987 18 C -0.720 4.720 19 C 0.004 3.996 20 C -0.145 4.145 21 C -0.105 4.105 22 C 0.146 3.854 23 N -0.509 5.509 24 C 0.223 3.777 25 Cl -0.009 7.009 26 H 0.142 0.858 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.140 0.860 30 H 0.116 0.884 31 H 0.293 0.707 32 H 0.169 0.831 33 H 0.091 0.909 34 H 0.099 0.901 35 H 0.083 0.917 36 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.652 -12.116 -10.031 17.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.278 6.278 3 C 0.290 3.710 4 O -0.406 6.406 5 C -0.001 4.001 6 N -0.634 5.634 7 C -0.395 4.395 8 H 0.105 0.895 9 C -0.162 4.162 10 N -0.463 5.463 11 Si 0.687 3.313 12 H -0.191 1.191 13 H -0.177 1.177 14 H -0.147 1.147 15 S 2.646 3.354 16 O -0.992 6.992 17 O -0.977 6.977 18 C -0.803 4.803 19 C -0.023 4.023 20 C -0.148 4.148 21 C -0.162 4.162 22 C -0.010 4.010 23 N -0.221 5.221 24 C 0.059 3.941 25 Cl 0.020 6.980 26 H 0.160 0.840 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.158 0.842 30 H 0.134 0.866 31 H 0.104 0.896 32 H 0.186 0.814 33 H 0.110 0.890 34 H 0.118 0.882 35 H 0.102 0.898 36 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 6.533 -10.887 -10.002 16.163 hybrid contribution 0.179 -0.076 0.292 0.351 sum 6.712 -10.962 -9.709 16.109 Atomic orbital electron populations 1.23556 0.75060 1.05827 1.02184 1.86456 1.24910 1.32182 1.84271 1.24556 0.92925 0.81672 0.71887 1.90630 1.67232 1.37679 1.45063 1.21203 0.87457 0.84474 1.06979 1.53498 1.69149 1.19623 1.21162 1.18800 1.40107 0.97601 0.83004 0.89486 1.26077 0.96428 0.99584 0.94064 1.69996 1.35478 1.40658 1.00194 0.87034 0.81784 0.80651 0.81860 1.19065 1.17723 1.14652 1.10724 0.75050 0.75444 0.74174 1.93327 1.67369 1.77378 1.61116 1.93388 1.87074 1.32919 1.84342 1.32563 1.28193 1.12977 1.06530 1.21631 0.98993 0.90046 0.91592 1.21574 0.92744 1.00176 1.00286 1.20874 1.04288 0.98412 0.92600 1.23656 1.02138 0.88630 0.86623 1.67226 1.19347 1.15803 1.19746 1.21392 0.90114 0.92275 0.90323 1.98519 1.93182 1.67936 1.38340 0.84037 0.92628 0.92346 0.84228 0.86613 0.89597 0.81375 0.89019 0.88234 0.89831 0.77174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 10.56 113.37 1.20 1.89 16 2 O -0.36 -12.01 10.57 -51.42 -0.54 -12.55 16 3 C 0.45 18.64 8.00 71.23 0.57 19.21 16 4 O -0.52 -25.62 16.11 21.96 0.35 -25.27 16 5 C 0.13 5.01 4.46 85.63 0.38 5.39 16 6 N -0.81 -37.96 2.00 -347.17 -0.69 -38.66 16 7 C -0.25 -12.67 6.83 84.03 0.57 -12.10 16 8 H 0.09 5.15 7.54 -2.91 -0.02 5.13 16 9 C 0.06 2.69 5.08 84.86 0.43 3.12 16 10 N -0.83 -42.42 13.97 21.65 0.30 -42.12 16 11 Si 0.87 35.05 25.81 68.60 1.77 36.82 16 12 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 13 H -0.25 -9.51 7.11 99.48 0.71 -8.80 16 14 H -0.22 -7.96 5.82 99.48 0.58 -7.38 16 15 S 2.54 119.55 5.06 -56.49 -0.29 119.27 16 16 O -1.00 -47.06 16.27 -128.00 -2.08 -49.14 16 17 O -0.99 -53.31 15.17 -128.00 -1.94 -55.25 16 18 C -0.72 -28.48 5.94 22.39 0.13 -28.35 16 19 C 0.00 0.11 9.35 22.46 0.21 0.32 16 20 C -0.15 -3.31 5.90 -19.77 -0.12 -3.43 16 21 C -0.10 -1.25 10.04 71.24 0.72 -0.54 16 22 C 0.15 3.59 10.86 84.67 0.92 4.51 16 23 N -0.51 -17.79 10.34 -186.68 -1.93 -19.72 16 24 C 0.22 9.11 7.26 84.70 0.61 9.72 16 25 Cl -0.01 -0.39 23.84 -2.72 -0.06 -0.46 16 26 H 0.14 2.27 8.14 -2.38 -0.02 2.25 16 27 H 0.05 1.50 8.13 -2.39 -0.02 1.48 16 28 H 0.06 1.53 8.13 -2.39 -0.02 1.51 16 29 H 0.14 4.43 7.81 -2.39 -0.02 4.41 16 30 H 0.12 4.26 3.99 -2.39 -0.01 4.25 16 31 H 0.29 13.56 8.31 -92.71 -0.77 12.79 16 32 H 0.17 4.50 7.44 -2.91 -0.02 4.48 16 33 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.10 0.71 8.09 -2.39 -0.02 0.69 16 35 H 0.08 0.89 8.10 -2.39 -0.02 0.87 16 36 H 0.21 2.99 8.06 -2.91 -0.02 2.96 16 Total: -1.00 -73.70 335.32 1.52 -72.17 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: 1.01 Total: 15.13 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: 5.63 Total: -0.23 kcal Atomic # 7 Polarization: -98.18 SS G_CDS: -2.32 Total: -100.50 kcal Atomic # 8 Polarization: -138.00 SS G_CDS: -4.21 Total: -142.21 kcal Atomic # 14 Polarization: 35.05 SS G_CDS: 1.77 Total: 36.82 kcal Atomic # 16 Polarization: 119.55 SS G_CDS: -0.29 Total: 119.27 kcal Atomic # 17 Polarization: -0.39 SS G_CDS: -0.06 Total: -0.46 kcal Total: -73.70 1.52 -72.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001660320756.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.304 kcal (2) G-P(sol) polarization free energy of solvation -73.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds