Wall clock time and date at job start Wed Apr 1 2020 05:26:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99891 * 2 1 4 4 H 1.48500 * 109.47385 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46850 * 299.99971 * 3 2 1 6 6 H 1.48500 * 109.47389 * 59.99830 * 3 2 1 7 7 C 1.38793 * 120.00284 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00401 * 180.02562 * 7 2 1 9 9 S 1.76202 * 119.99846 * 359.97438 * 7 2 1 10 10 C 1.81004 * 99.99819 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.46908 * 180.02562 * 10 9 7 12 12 O 1.21283 * 120.00275 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00075 * 179.97438 * 11 10 9 14 14 C 1.46499 * 120.00065 * 180.02562 * 13 11 10 15 15 C 1.53004 * 109.47198 * 180.02562 * 14 13 11 16 16 N 1.46499 * 109.47198 * 179.97438 * 15 14 13 17 17 C 1.34777 * 119.99665 * 180.27868 * 16 15 14 18 18 O 1.21653 * 120.00225 * 359.72103 * 17 16 15 19 19 C 1.47044 * 119.99524 * 179.72422 * 17 16 15 20 20 C 1.44508 * 123.49530 * 359.72735 * 19 17 16 21 21 C 1.32693 * 113.09707 * 179.80820 * 20 19 17 22 22 S 1.75494 * 110.63325 * 0.44158 * 21 20 19 23 23 C 1.36230 * 123.48923 * 180.02562 * 19 17 16 24 24 Cl 1.73601 * 124.60516 * 359.97438 * 23 19 17 25 25 H 0.97003 * 120.00379 * 0.02562 * 1 2 3 26 26 H 1.08994 * 109.47277 * 60.00374 * 10 9 7 27 27 H 1.08998 * 109.47382 * 300.00026 * 10 9 7 28 28 H 0.97000 * 119.99549 * 0.02562 * 13 11 10 29 29 H 1.08995 * 109.47424 * 60.00473 * 14 13 11 30 30 H 1.09006 * 109.46868 * 300.00024 * 14 13 11 31 31 H 1.09009 * 109.46730 * 59.99787 * 15 14 13 32 32 H 1.08998 * 109.46846 * 300.00332 * 15 14 13 33 33 H 0.97001 * 119.99790 * 359.97438 * 16 15 14 34 34 H 1.08000 * 123.44609 * 359.97438 * 20 19 17 35 35 H 1.07998 * 124.68476 * 180.18004 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3965 -1.2126 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2019 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7279 0.0019 10 6 2.5159 -3.8913 0.0029 11 6 1.9875 -5.3026 0.0036 12 8 0.7912 -5.5023 0.0038 13 7 2.8442 -6.3430 0.0039 14 6 2.3305 -7.7150 0.0039 15 6 3.5026 -8.6985 0.0049 16 7 2.9889 -10.0704 0.0056 17 6 3.8457 -11.1108 0.0122 18 8 5.0457 -10.9106 0.0125 19 6 3.3300 -12.4878 0.0190 20 6 1.9218 -12.8120 0.0248 21 6 1.6884 -14.1182 0.0263 22 16 3.1963 -15.0159 0.0333 23 6 4.1304 -13.5902 0.0264 24 17 5.8659 -13.5485 0.0283 25 1 -0.4851 0.8400 -0.0004 26 1 3.1245 -3.7305 0.8928 27 1 3.1245 -3.7320 -0.8871 28 1 3.8010 -6.1833 0.0041 29 1 1.7222 -7.8752 -0.8862 30 1 1.7217 -7.8749 0.8938 31 1 4.1107 -8.5381 0.8953 32 1 4.1118 -8.5386 -0.8847 33 1 2.0321 -10.2300 0.0057 34 1 1.1396 -12.0674 0.0250 35 1 0.7060 -14.5670 0.0277 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001686445740.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:26:32 Heat of formation + Delta-G solvation = -72.423882 kcal Electronic energy + Delta-G solvation = -21401.495865 eV Core-core repulsion = 17677.363497 eV Total energy + Delta-G solvation = -3724.132368 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 348.016 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.09723 -40.54811 -38.28596 -37.45909 -36.94049 -35.03128 -34.57853 -31.72256 -30.64744 -29.37576 -27.65727 -26.00982 -23.58199 -22.74413 -21.82124 -20.57608 -19.86952 -19.51245 -18.13399 -17.64662 -17.22140 -17.10265 -16.87560 -16.68791 -16.33949 -15.75371 -15.38820 -15.38298 -14.92889 -14.70998 -14.48233 -14.42133 -14.37220 -14.02880 -13.65793 -13.15347 -12.93206 -12.88434 -12.82395 -12.61880 -12.58588 -12.11498 -12.07347 -11.71099 -11.15421 -11.11486 -10.92091 -10.31038 -10.26959 -10.15782 -9.86443 -9.55540 -8.65535 -8.34569 -6.12026 -0.51174 -0.00587 0.69310 0.90341 1.15852 1.25980 1.41708 1.45723 1.57165 1.59429 1.90291 2.20117 2.27473 2.57894 2.99868 3.32768 3.57049 3.68069 3.96421 4.00944 4.01452 4.18416 4.32038 4.39783 4.53612 4.67869 4.81929 4.86865 4.94972 5.08908 5.22270 5.38477 5.43166 6.20663 6.38758 6.46006 7.07344 7.09920 7.20220 8.74813 Molecular weight = 348.02amu Principal moments of inertia in cm(-1) A = 0.034471 B = 0.001494 C = 0.001434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.071969 B =18733.235978 C =19519.526170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.014 3.986 3 Si 0.998 3.002 4 H -0.258 1.258 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.546 4.546 8 H 0.083 0.917 9 S -0.149 6.149 10 C -0.132 4.132 11 C 0.538 3.462 12 O -0.561 6.561 13 N -0.712 5.712 14 C 0.116 3.884 15 C 0.122 3.878 16 N -0.708 5.708 17 C 0.571 3.429 18 O -0.559 6.559 19 C -0.171 4.171 20 C -0.110 4.110 21 C -0.212 4.212 22 S 0.265 5.735 23 C -0.152 4.152 24 Cl -0.002 7.002 25 H 0.271 0.729 26 H 0.111 0.889 27 H 0.111 0.889 28 H 0.418 0.582 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.416 0.584 34 H 0.183 0.817 35 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.475 -34.072 0.067 34.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.191 4.191 3 Si 0.820 3.180 4 H -0.181 1.181 5 H -0.199 1.199 6 H -0.200 1.200 7 C -0.694 4.694 8 H 0.101 0.899 9 S 0.078 5.922 10 C -0.283 4.283 11 C 0.324 3.676 12 O -0.439 6.439 13 N -0.367 5.367 14 C -0.009 4.009 15 C -0.003 4.003 16 N -0.361 5.361 17 C 0.358 3.642 18 O -0.439 6.439 19 C -0.191 4.191 20 C -0.138 4.138 21 C -0.347 4.347 22 S 0.529 5.471 23 C -0.299 4.299 24 Cl 0.027 6.973 25 H 0.080 0.920 26 H 0.129 0.871 27 H 0.129 0.871 28 H 0.255 0.745 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.254 0.746 34 H 0.200 0.800 35 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 6.698 -35.713 0.075 36.336 hybrid contribution 1.541 2.939 -0.008 3.318 sum 8.239 -32.774 0.068 33.794 Atomic orbital electron populations 1.70178 1.07915 1.28539 1.48080 1.26101 0.95961 1.03259 0.93777 0.84920 0.78605 0.76447 0.78063 1.18123 1.19948 1.19962 1.23250 0.95383 0.92074 1.58726 0.89921 1.85530 1.10450 0.99158 1.97053 1.23383 1.03645 0.94293 1.06974 1.19982 0.86129 0.86506 0.75003 1.90698 1.17226 1.86015 1.49977 1.45512 1.10598 1.04710 1.75901 1.21378 0.96059 0.80027 1.03387 1.21301 0.95508 0.79897 1.03585 1.45473 1.10793 1.04851 1.75030 1.17705 0.85730 0.84599 0.76194 1.90853 1.16179 1.86103 1.50738 1.20387 0.94394 0.92622 1.11736 1.21341 0.92887 0.97680 1.01855 1.26029 1.03333 0.96952 1.08398 1.83233 0.93793 1.02367 1.67690 1.25687 0.91828 1.01738 1.10683 1.98411 1.04146 1.98386 1.96387 0.91989 0.87096 0.87100 0.74469 0.90700 0.90712 0.90438 0.90417 0.74589 0.80018 0.77144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.46 13.22 21.65 0.29 -55.17 16 2 C 0.01 0.78 5.49 84.86 0.47 1.25 16 3 Si 1.00 43.37 29.55 68.60 2.03 45.39 16 4 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 5 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 6 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 7 C -0.55 -30.90 9.50 67.95 0.65 -30.26 16 8 H 0.08 4.35 7.80 -2.91 -0.02 4.33 16 9 S -0.15 -8.12 20.57 -56.49 -1.16 -9.28 16 10 C -0.13 -5.02 6.16 71.24 0.44 -4.58 16 11 C 0.54 18.60 7.85 87.66 0.69 19.29 16 12 O -0.56 -24.47 15.86 -3.04 -0.05 -24.52 16 13 N -0.71 -16.07 5.56 -463.05 -2.57 -18.64 16 14 C 0.12 2.10 5.79 86.38 0.50 2.60 16 15 C 0.12 1.85 5.79 86.38 0.50 2.35 16 16 N -0.71 -10.06 5.53 -466.72 -2.58 -12.64 16 17 C 0.57 11.29 7.79 86.55 0.67 11.97 16 18 O -0.56 -15.20 14.91 -4.20 -0.06 -15.26 16 19 C -0.17 -2.67 5.98 -19.84 -0.12 -2.79 16 20 C -0.11 -0.87 9.90 22.70 0.22 -0.64 16 21 C -0.21 -1.05 11.11 66.65 0.74 -0.31 16 22 S 0.26 2.21 23.02 -56.49 -1.30 0.91 16 23 C -0.15 -2.46 6.87 67.35 0.46 -2.00 16 24 Cl 0.00 -0.04 27.20 -2.72 -0.07 -0.12 16 25 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 26 H 0.11 3.80 8.14 -2.40 -0.02 3.78 16 27 H 0.11 3.80 8.14 -2.40 -0.02 3.78 16 28 H 0.42 6.85 8.47 -92.71 -0.79 6.06 16 29 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 31 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 32 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.42 3.54 7.02 -92.71 -0.65 2.89 16 34 H 0.18 0.41 7.10 -2.91 -0.02 0.38 16 35 H 0.21 -0.37 8.06 -2.91 -0.02 -0.39 16 Total: -1.00 -82.86 354.59 -0.54 -83.39 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -0.27 Total: 9.05 kcal Atomic # 6 Polarization: -8.34 SS G_CDS: 5.22 Total: -3.12 kcal Atomic # 7 Polarization: -81.58 SS G_CDS: -4.87 Total: -86.45 kcal Atomic # 8 Polarization: -39.67 SS G_CDS: -0.11 Total: -39.78 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.39 kcal Atomic # 16 Polarization: -5.91 SS G_CDS: -2.46 Total: -8.38 kcal Atomic # 17 Polarization: -0.04 SS G_CDS: -0.07 Total: -0.12 kcal Total: -82.86 -0.54 -83.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001686445740.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.969 kcal (2) G-P(sol) polarization free energy of solvation -82.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds