Wall clock time and date at job start Wed Apr 1 2020 04:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46779 * 2 1 4 4 C 1.50706 * 109.47004 * 119.99535 * 2 1 3 5 5 N 1.30294 * 126.34590 * 300.03043 * 4 2 1 6 6 N 1.28526 * 110.04989 * 179.97438 * 5 4 2 7 7 C 1.31218 * 109.86380 * 359.97438 * 6 5 4 8 8 N 1.38578 * 126.47531 * 179.97438 * 7 6 5 9 9 C 1.46901 * 111.00600 * 295.42531 * 8 7 6 10 10 C 1.46904 * 110.99880 * 59.38078 * 8 7 6 11 11 H 1.09000 * 109.46973 * 299.99573 * 10 8 7 12 12 C 1.52997 * 109.47062 * 59.99935 * 10 8 7 13 13 C 1.50698 * 109.47140 * 179.97438 * 10 8 7 14 14 H 1.07999 * 120.00425 * 359.97438 * 13 10 8 15 15 C 1.37878 * 120.00116 * 179.97438 * 13 10 8 16 16 N 1.31516 * 119.99948 * 0.02562 * 15 13 10 17 17 Si 1.86795 * 120.00198 * 179.97438 * 15 13 10 18 18 H 1.48509 * 109.46791 * 90.00496 * 17 15 13 19 19 H 1.48506 * 109.47460 * 210.00010 * 17 15 13 20 20 H 1.48494 * 109.47375 * 330.00249 * 17 15 13 21 21 N 1.36454 * 107.05345 * 359.73871 * 7 6 5 22 22 C 1.46497 * 127.14241 * 180.26374 * 21 7 6 23 23 C 1.52998 * 109.47046 * 269.05771 * 22 21 7 24 24 N 1.46904 * 109.47140 * 184.91260 * 23 22 21 25 25 C 1.46845 * 110.99995 * 292.92822 * 24 23 22 26 26 C 1.50141 * 110.26930 * 287.55801 * 25 24 23 27 27 C 1.29817 * 123.28776 * 342.90383 * 26 25 24 28 28 C 1.50312 * 122.88929 * 0.41940 * 27 26 25 29 29 C 1.47242 * 111.00237 * 169.99920 * 24 23 22 30 30 H 1.09003 * 109.46899 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46983 * 60.00197 * 1 2 3 32 32 H 1.08990 * 109.47616 * 300.00128 * 1 2 3 33 33 H 1.08998 * 109.47903 * 239.99954 * 2 1 3 34 34 H 1.08998 * 109.47503 * 60.00123 * 3 2 1 35 35 H 1.09009 * 109.46733 * 179.97438 * 3 2 1 36 36 H 1.08995 * 109.47328 * 299.99602 * 3 2 1 37 37 H 1.09004 * 109.47115 * 66.62803 * 9 8 7 38 38 H 1.08993 * 109.47609 * 186.63398 * 9 8 7 39 39 H 1.08998 * 109.46744 * 306.63311 * 9 8 7 40 40 H 1.09000 * 109.47522 * 59.99974 * 12 10 8 41 41 H 1.09000 * 109.46946 * 180.02562 * 12 10 8 42 42 H 1.08999 * 109.47055 * 299.99837 * 12 10 8 43 43 H 0.96996 * 120.00322 * 179.97438 * 16 15 13 44 44 H 1.08996 * 109.46752 * 29.05467 * 22 21 7 45 45 H 1.08995 * 109.47487 * 149.05706 * 22 21 7 46 46 H 1.09001 * 109.47047 * 304.90801 * 23 22 21 47 47 H 1.08995 * 109.47368 * 64.91059 * 23 22 21 48 48 H 1.08999 * 109.33389 * 47.78341 * 25 24 23 49 49 H 1.08996 * 109.33782 * 167.28611 * 25 24 23 50 50 H 1.08001 * 118.35683 * 162.95906 * 26 25 24 51 51 H 1.07993 * 118.55854 * 180.40006 * 27 26 25 52 52 H 1.09000 * 109.43325 * 223.40113 * 28 27 26 53 53 H 1.09005 * 109.42901 * 103.55462 * 28 27 26 54 54 H 1.08998 * 109.64061 * 174.27738 * 29 24 23 55 55 H 1.09007 * 109.63418 * 294.68341 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7103 1.2306 5 7 1.7945 -0.3749 2.4669 6 7 2.3754 -1.1970 3.2661 7 6 3.0198 -2.1088 2.5767 8 7 3.7626 -3.1591 3.0921 9 6 4.9299 -2.6643 3.8341 10 6 2.9313 -4.0272 3.9366 11 1 2.5250 -3.4469 4.7651 12 6 1.7829 -4.6006 3.1040 13 6 3.7712 -5.1555 4.4774 14 1 4.8178 -5.2215 4.2191 15 6 3.2035 -6.1038 5.3018 16 7 1.9289 -6.0238 5.6159 17 14 4.2445 -7.5028 5.9715 18 1 4.8456 -7.0961 7.2672 19 1 3.3911 -8.7008 6.1762 20 1 5.3242 -7.8236 5.0038 21 7 2.8160 -1.8306 1.2565 22 6 3.3329 -2.5751 0.1055 23 6 4.6816 -1.9892 -0.3170 24 7 5.1441 -2.6575 -1.5407 25 6 5.4653 -4.0667 -1.2814 26 6 6.7369 -4.1732 -0.4903 27 6 7.5906 -3.2015 -0.3793 28 6 7.3890 -1.8601 -1.0269 29 6 6.3126 -1.9660 -2.1102 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5138 0.8899 33 1 1.8935 -0.5138 -0.8899 34 1 1.6766 1.9564 0.8900 35 1 3.1300 1.4426 0.0005 36 1 1.6766 1.9564 -0.8900 37 1 4.5955 -2.1331 4.7253 38 1 5.5579 -3.5057 4.1267 39 1 5.5024 -1.9866 3.2007 40 1 2.1892 -5.1809 2.2755 41 1 1.1658 -5.2444 3.7307 42 1 1.1753 -3.7847 2.7125 43 1 1.5295 -6.6910 6.1956 44 1 3.4613 -3.6225 0.3784 45 1 2.6283 -2.4991 -0.7226 46 1 4.5706 -0.9214 -0.5059 47 1 5.4102 -2.1436 0.4788 48 1 4.6514 -4.5249 -0.7195 49 1 5.5851 -4.5900 -2.2300 50 1 6.9526 -5.1053 0.0110 51 1 8.4847 -3.3640 0.2041 52 1 8.3254 -1.5304 -1.4770 53 1 7.0755 -1.1373 -0.2736 54 1 6.6988 -2.5350 -2.9559 55 1 6.0226 -0.9688 -2.4415 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691645939.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:14 Heat of formation + Delta-G solvation = 91.564918 kcal Electronic energy + Delta-G solvation = -33231.600630 eV Core-core repulsion = 29304.850248 eV Total energy + Delta-G solvation = -3926.750382 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.238 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.98939 -40.60870 -38.88555 -36.77224 -36.07188 -34.82286 -33.67253 -31.88460 -31.43312 -30.17159 -30.10130 -28.02700 -27.51623 -26.27015 -25.92349 -24.43178 -24.30143 -23.37317 -22.80951 -21.21988 -20.53619 -18.68589 -18.58556 -18.17455 -17.49295 -17.25416 -16.79347 -16.60482 -16.41572 -15.81245 -15.78574 -15.47682 -15.22719 -15.03492 -14.96413 -14.54613 -14.22140 -14.00417 -13.78956 -13.63857 -13.59116 -13.29614 -13.09364 -13.00513 -12.99143 -12.92992 -12.76635 -12.67386 -12.56659 -12.34101 -12.23425 -12.21749 -12.17085 -12.15086 -12.04544 -11.80839 -11.65150 -11.42745 -11.11115 -11.00772 -10.60447 -9.95952 -9.90439 -9.55716 -9.36698 -8.16338 -6.30651 0.79151 1.29439 1.30139 1.43456 1.43945 1.54609 1.86325 2.39435 2.81086 3.08016 3.16755 3.37457 3.57226 3.78233 3.86917 3.96876 4.01914 4.09975 4.13405 4.18473 4.23868 4.28110 4.33779 4.42115 4.45608 4.58092 4.59097 4.63988 4.69183 4.71353 4.74480 4.81042 4.84282 4.84769 4.88656 4.93108 4.94776 4.96642 4.97192 5.03881 5.08013 5.11107 5.16294 5.34155 5.36859 5.42945 5.56557 5.57620 5.63463 5.84183 5.90414 5.95931 5.97249 6.05732 6.12778 6.62057 6.79664 7.38574 7.80125 8.90978 Molecular weight = 347.24amu Principal moments of inertia in cm(-1) A = 0.008271 B = 0.004552 C = 0.003258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3384.547860 B = 6149.460949 C = 8593.021732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.001 4.001 3 C -0.133 4.133 4 C 0.187 3.813 5 N -0.326 5.326 6 N -0.365 5.365 7 C 0.363 3.637 8 N -0.461 5.461 9 C 0.061 3.939 10 C 0.237 3.763 11 H -0.031 1.031 12 C -0.108 4.108 13 C -0.520 4.520 14 H 0.072 0.928 15 C 0.014 3.986 16 N -0.921 5.921 17 Si 0.967 3.033 18 H -0.277 1.277 19 H -0.284 1.284 20 H -0.261 1.261 21 N -0.462 5.462 22 C 0.116 3.884 23 C 0.055 3.945 24 N -0.517 5.517 25 C 0.073 3.927 26 C -0.192 4.192 27 C -0.165 4.165 28 C -0.126 4.126 29 C 0.054 3.946 30 H 0.044 0.956 31 H 0.100 0.900 32 H 0.048 0.952 33 H 0.112 0.888 34 H 0.048 0.952 35 H 0.051 0.949 36 H 0.098 0.902 37 H 0.014 0.986 38 H 0.088 0.912 39 H 0.063 0.937 40 H 0.040 0.960 41 H 0.066 0.934 42 H -0.003 1.003 43 H 0.263 0.737 44 H 0.087 0.913 45 H 0.121 0.879 46 H 0.085 0.915 47 H 0.031 0.969 48 H 0.078 0.922 49 H 0.106 0.894 50 H 0.102 0.898 51 H 0.103 0.897 52 H 0.093 0.907 53 H 0.064 0.936 54 H 0.092 0.908 55 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.687 9.374 -21.561 24.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.021 4.021 3 C -0.191 4.191 4 C -0.082 4.082 5 N -0.165 5.165 6 N -0.208 5.208 7 C 0.005 3.995 8 N -0.188 5.188 9 C -0.087 4.087 10 C 0.131 3.869 11 H -0.014 1.014 12 C -0.167 4.167 13 C -0.558 4.558 14 H 0.090 0.910 15 C -0.185 4.185 16 N -0.560 5.560 17 Si 0.792 3.208 18 H -0.203 1.203 19 H -0.210 1.210 20 H -0.185 1.185 21 N -0.154 5.154 22 C -0.007 4.007 23 C -0.074 4.074 24 N -0.240 5.240 25 C -0.055 4.055 26 C -0.211 4.211 27 C -0.183 4.183 28 C -0.164 4.164 29 C -0.073 4.073 30 H 0.063 0.937 31 H 0.119 0.881 32 H 0.067 0.933 33 H 0.130 0.870 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.117 0.883 37 H 0.033 0.967 38 H 0.106 0.894 39 H 0.082 0.918 40 H 0.059 0.941 41 H 0.085 0.915 42 H 0.016 0.984 43 H 0.073 0.927 44 H 0.105 0.895 45 H 0.139 0.861 46 H 0.103 0.897 47 H 0.050 0.950 48 H 0.096 0.904 49 H 0.124 0.876 50 H 0.120 0.880 51 H 0.121 0.879 52 H 0.111 0.889 53 H 0.082 0.918 54 H 0.110 0.890 55 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 6.791 9.757 -21.021 24.149 hybrid contribution 1.163 -1.429 1.665 2.483 sum 7.953 8.327 -19.356 22.522 Atomic orbital electron populations 1.21795 0.92341 1.01949 1.03523 1.19857 0.97025 0.96163 0.89093 1.21758 1.00829 0.93031 1.03470 1.25617 0.95939 0.88367 0.98234 1.73806 1.21087 1.22426 0.99182 1.74579 1.13567 1.05318 1.27290 1.22669 0.98923 0.95149 0.82773 1.59149 1.08171 1.12189 1.39269 1.22114 0.91251 0.99946 0.95391 1.19061 0.90300 0.89674 0.87844 1.01384 1.21527 0.98054 0.98195 0.98878 1.21279 0.96488 1.09041 1.28978 0.91025 1.25760 0.96075 1.00424 0.96232 1.70050 1.12767 1.36561 1.36641 0.85413 0.78544 0.78126 0.78696 1.20329 1.21003 1.18530 1.46458 1.38998 1.23107 1.06866 1.21936 0.97134 0.95999 0.85623 1.22190 0.94063 0.99005 0.92135 1.62713 1.33497 1.02235 1.25523 1.21235 0.94236 0.89849 1.00152 1.22914 0.97627 0.99886 1.00706 1.22259 0.99481 0.95707 1.00846 1.21097 1.01598 0.94716 0.99029 1.22377 0.87885 1.00615 0.96451 0.93720 0.88128 0.93268 0.87009 0.93262 0.92944 0.88317 0.96741 0.89355 0.91814 0.94069 0.91494 0.98402 0.92748 0.89463 0.86109 0.89659 0.95020 0.90400 0.87596 0.88032 0.87925 0.88862 0.91799 0.88987 0.88611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 9.18 71.98 0.66 -2.06 16 2 C 0.00 -0.01 3.29 -11.54 -0.04 -0.05 16 3 C -0.13 -2.32 9.18 71.98 0.66 -1.66 16 4 C 0.19 6.06 6.58 137.64 0.91 6.96 16 5 N -0.33 -13.60 12.18 -49.53 -0.60 -14.21 16 6 N -0.36 -17.48 12.13 -58.01 -0.70 -18.18 16 7 C 0.36 15.58 5.02 260.11 1.31 16.88 16 8 N -0.46 -20.69 4.66 -711.00 -3.31 -24.00 16 9 C 0.06 2.50 9.13 127.69 1.17 3.67 16 10 C 0.24 12.62 2.00 44.17 0.09 12.71 16 11 H -0.03 -1.98 8.08 -2.39 -0.02 -2.00 16 12 C -0.11 -5.63 8.84 71.98 0.64 -4.99 16 13 C -0.52 -28.07 7.95 25.60 0.20 -27.87 16 14 H 0.07 3.71 6.40 -2.91 -0.02 3.69 16 15 C 0.01 0.78 5.30 84.65 0.45 1.23 16 16 N -0.92 -53.74 11.32 21.45 0.24 -53.50 16 17 Si 0.97 42.83 29.54 68.60 2.03 44.86 16 18 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 19 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 20 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 21 N -0.46 -15.55 2.81 -514.87 -1.45 -16.99 16 22 C 0.12 2.95 5.72 86.38 0.49 3.45 16 23 C 0.06 1.19 4.35 86.30 0.38 1.56 16 24 N -0.52 -9.01 5.02 -900.92 -4.53 -13.53 16 25 C 0.07 1.38 5.83 85.39 0.50 1.88 16 26 C -0.19 -4.07 9.37 26.69 0.25 -3.82 16 27 C -0.16 -3.26 9.29 26.74 0.25 -3.01 16 28 C -0.13 -1.98 5.54 29.75 0.16 -1.81 16 29 C 0.05 0.74 6.02 86.27 0.52 1.26 16 30 H 0.04 0.97 8.14 -2.39 -0.02 0.96 16 31 H 0.10 1.26 8.14 -2.38 -0.02 1.24 16 32 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.11 1.73 6.97 -2.39 -0.02 1.71 16 34 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 36 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.09 3.58 6.34 -2.39 -0.02 3.56 16 39 H 0.06 2.29 8.10 -2.39 -0.02 2.27 16 40 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.07 3.82 6.07 -2.39 -0.01 3.80 16 42 H 0.00 -0.16 7.22 -2.39 -0.02 -0.18 16 43 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 44 H 0.09 2.59 6.58 -2.39 -0.02 2.57 16 45 H 0.12 2.44 7.28 -2.39 -0.02 2.42 16 46 H 0.09 1.67 8.08 -2.39 -0.02 1.65 16 47 H 0.03 0.85 6.04 -2.39 -0.01 0.83 16 48 H 0.08 1.69 6.15 -2.39 -0.01 1.68 16 49 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 50 H 0.10 2.29 8.06 -2.91 -0.02 2.27 16 51 H 0.10 2.01 8.06 -2.91 -0.02 1.99 16 52 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 53 H 0.06 1.15 7.16 -2.38 -0.02 1.13 16 54 H 0.09 1.08 8.08 -2.39 -0.02 1.06 16 55 H 0.10 1.03 8.14 -2.38 -0.02 1.01 16 Total: -1.00 -70.79 424.10 1.12 -69.67 By element: Atomic # 1 Polarization: 20.71 SS G_CDS: 0.85 Total: 21.56 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: 8.59 Total: 4.34 kcal Atomic # 7 Polarization: -130.07 SS G_CDS: -10.35 Total: -140.42 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Total: -70.79 1.12 -69.67 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691645939.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.234 kcal (2) G-P(sol) polarization free energy of solvation -70.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds