Wall clock time and date at job start Wed Apr 1 2020 04:54:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 C 1.52997 * 109.47134 * 2 1
4 4 C 1.50701 * 109.47530 * 120.00342 * 2 1 3
5 5 N 1.30292 * 126.34545 * 300.02856 * 4 2 1
6 6 N 1.28523 * 110.05394 * 179.97438 * 5 4 2
7 7 C 1.31222 * 109.85865 * 359.97438 * 6 5 4
8 8 N 1.38583 * 126.47096 * 179.97438 * 7 6 5
9 9 C 1.46903 * 111.00273 * 306.38722 * 8 7 6
10 10 C 1.46901 * 110.99931 * 70.34292 * 8 7 6
11 11 H 1.08991 * 109.47370 * 54.99541 * 10 8 7
12 12 C 1.53003 * 109.46968 * 294.99922 * 10 8 7
13 13 C 1.50698 * 109.47178 * 174.99838 * 10 8 7
14 14 H 1.07996 * 119.99847 * 0.02562 * 13 10 8
15 15 C 1.37878 * 119.99797 * 179.97438 * 13 10 8
16 16 N 1.31515 * 120.00203 * 0.02562 * 15 13 10
17 17 Si 1.86802 * 119.99804 * 180.02562 * 15 13 10
18 18 H 1.48508 * 109.47233 * 0.02562 * 17 15 13
19 19 H 1.48502 * 109.47397 * 120.00064 * 17 15 13
20 20 H 1.48497 * 109.47064 * 240.00381 * 17 15 13
21 21 N 1.36450 * 107.05237 * 359.73812 * 7 6 5
22 22 C 1.46500 * 127.13553 * 180.26394 * 21 7 6
23 23 C 1.53000 * 109.47440 * 271.89789 * 22 21 7
24 24 N 1.46902 * 109.47229 * 184.92517 * 23 22 21
25 25 C 1.46847 * 110.99704 * 292.92731 * 24 23 22
26 26 C 1.50139 * 110.27042 * 287.55758 * 25 24 23
27 27 C 1.29817 * 123.28420 * 342.90753 * 26 25 24
28 28 C 1.50303 * 122.89708 * 0.42429 * 27 26 25
29 29 C 1.47240 * 110.99917 * 169.99955 * 24 23 22
30 30 H 1.09001 * 109.47256 * 59.99677 * 1 2 3
31 31 H 1.08999 * 109.46938 * 299.99855 * 1 2 3
32 32 H 1.09005 * 109.47500 * 179.97438 * 1 2 3
33 33 H 1.09002 * 109.46741 * 240.00632 * 2 1 3
34 34 H 1.08999 * 109.47090 * 60.00237 * 3 2 1
35 35 H 1.09005 * 109.47411 * 180.02562 * 3 2 1
36 36 H 1.09001 * 109.47313 * 300.00288 * 3 2 1
37 37 H 1.09004 * 109.46632 * 55.68542 * 9 8 7
38 38 H 1.08995 * 109.47075 * 175.67571 * 9 8 7
39 39 H 1.08998 * 109.47259 * 295.68393 * 9 8 7
40 40 H 1.08999 * 109.47312 * 299.99692 * 12 10 8
41 41 H 1.09000 * 109.47614 * 60.00123 * 12 10 8
42 42 H 1.09004 * 109.47025 * 179.97438 * 12 10 8
43 43 H 0.97005 * 119.99873 * 180.02562 * 16 15 13
44 44 H 1.09007 * 109.47169 * 31.89623 * 22 21 7
45 45 H 1.08999 * 109.47229 * 151.89392 * 22 21 7
46 46 H 1.09002 * 109.46749 * 304.92325 * 23 22 21
47 47 H 1.09000 * 109.46575 * 64.92296 * 23 22 21
48 48 H 1.09000 * 109.33423 * 47.78572 * 25 24 23
49 49 H 1.08998 * 109.33316 * 167.29261 * 25 24 23
50 50 H 1.07998 * 118.35615 * 162.95835 * 26 25 24
51 51 H 1.08009 * 118.55284 * 180.39581 * 27 26 25
52 52 H 1.09001 * 109.42976 * 223.40465 * 28 27 26
53 53 H 1.09000 * 109.43488 * 103.54854 * 28 27 26
54 54 H 1.08998 * 109.63586 * 174.27446 * 29 24 23
55 55 H 1.08995 * 109.63542 * 294.68333 * 29 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 6 2.0324 -0.7105 1.2304
5 7 1.7947 -0.3752 2.4668
6 7 2.3756 -1.1974 3.2658
7 6 3.0200 -2.1091 2.5762
8 7 3.7629 -3.1594 3.0915
9 6 4.7721 -2.6739 4.0422
10 6 2.8916 -4.1639 3.7159
11 1 2.1422 -4.4927 2.9961
12 6 2.1954 -3.5498 4.9321
13 6 3.7195 -5.3444 4.1539
14 1 4.7863 -5.3479 3.9857
15 6 3.1152 -6.4195 4.7704
16 7 1.8162 -6.4149 4.9757
17 14 4.1416 -7.8825 5.3140
18 1 5.5665 -7.6425 4.9709
19 1 4.0099 -8.0615 6.7822
20 1 3.6647 -9.1064 4.6213
21 7 2.8160 -1.8306 1.2561
22 6 3.3329 -2.5751 0.1051
23 6 4.7136 -2.0353 -0.2733
24 7 5.1807 -2.7001 -1.4972
25 6 5.4404 -4.1251 -1.2557
26 6 6.6864 -4.2950 -0.4355
27 6 7.5739 -3.3595 -0.2859
28 6 7.4411 -2.0003 -0.9135
29 6 6.3893 -2.0452 -2.0249
30 1 -0.3634 0.5139 -0.8899
31 1 -0.3633 0.5138 0.8900
32 1 -0.3634 -1.0277 -0.0005
33 1 1.8932 -0.5138 -0.8901
34 1 1.6766 1.9563 0.8900
35 1 3.1300 1.4425 -0.0005
36 1 1.6766 1.9563 -0.8899
37 1 4.2841 -2.0932 4.8250
38 1 5.2889 -3.5233 4.4887
39 1 5.4919 -2.0450 3.5183
40 1 2.9448 -3.2209 5.6521
41 1 1.5965 -2.6959 4.6154
42 1 1.5486 -4.2950 5.3952
43 1 1.3911 -7.1712 5.4097
44 1 3.4137 -3.6314 0.3621
45 1 2.6530 -2.4575 -0.7387
46 1 4.6489 -0.9609 -0.4454
47 1 5.4151 -2.2319 0.5374
48 1 4.5953 -4.5606 -0.7225
49 1 5.5639 -4.6363 -2.2104
50 1 6.8530 -5.2432 0.0539
51 1 8.4461 -3.5669 0.3166
52 1 8.4007 -1.6999 -1.3344
53 1 7.1367 -1.2789 -0.1552
54 1 6.7744 -2.6143 -2.8710
55 1 6.1467 -1.0320 -2.3450
RHF calculation, no. of doubly occupied orbitals= 67
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001691645942.mol2 55
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:54:17
Heat of formation + Delta-G solvation = 96.962760 kcal
Electronic energy + Delta-G solvation = -33211.204994 eV
Core-core repulsion = 29284.688680 eV
Total energy + Delta-G solvation = -3926.516314 eV
No. of doubly occupied orbitals = 67
Molecular weight
(most abundant/longest-lived isotopes) = 347.238 amu
Computer time = 1.00 seconds
Orbital eigenvalues (eV)
-43.98324 -40.60944 -39.07550 -36.75651 -36.10137 -34.76770 -33.68038 -31.88695
-31.07741 -30.12195 -29.86899 -28.02261 -27.30638 -27.01166 -26.01801 -24.42987
-24.19316 -23.28855 -22.74973 -21.09592 -20.66354 -18.69388 -18.40032 -18.20195
-17.47572 -17.25440 -16.87564 -16.59525 -16.45851 -15.87541 -15.72112 -15.39639
-15.23045 -15.07018 -14.79330 -14.55441 -14.28720 -13.93862 -13.71067 -13.61321
-13.36848 -13.30475 -13.14204 -13.04593 -12.99372 -12.95368 -12.76613 -12.72764
-12.55802 -12.54996 -12.20426 -12.17305 -12.16117 -12.07374 -12.01768 -11.80715
-11.65181 -11.41393 -11.05349 -10.90195 -10.55776 -9.96053 -9.94120 -9.44235
-9.36924 -8.16096 -6.29499 0.78963 1.29582 1.31147 1.41566 1.43751
1.55093 1.86527 2.39591 2.82595 3.11442 3.15406 3.37667 3.57446
3.77540 3.86794 3.96838 4.01324 4.12681 4.14816 4.18841 4.23114
4.27859 4.35927 4.42430 4.46996 4.58830 4.60752 4.66840 4.69081
4.71408 4.74368 4.84799 4.87643 4.92784 4.94619 4.95291 4.97620
4.98084 5.05017 5.07887 5.08897 5.10885 5.15903 5.36884 5.38017
5.46619 5.56879 5.60151 5.64338 5.82473 5.88590 5.96587 6.00201
6.06074 6.18787 6.63650 6.80057 7.39520 7.80722 8.91038
Molecular weight = 347.24amu
Principal moments of inertia in cm(-1)
A = 0.007951 B = 0.004718 C = 0.003305
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3520.836943 B = 5933.426634 C = 8470.034375
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C -0.001 4.001
3 C -0.132 4.132
4 C 0.187 3.813
5 N -0.327 5.327
6 N -0.348 5.348
7 C 0.352 3.648
8 N -0.462 5.462
9 C 0.055 3.945
10 C 0.238 3.762
11 H -0.003 1.003
12 C -0.153 4.153
13 C -0.513 4.513
14 H 0.069 0.931
15 C 0.015 3.985
16 N -0.920 5.920
17 Si 0.965 3.035
18 H -0.262 1.262
19 H -0.283 1.283
20 H -0.281 1.281
21 N -0.464 5.464
22 C 0.117 3.883
23 C 0.057 3.943
24 N -0.518 5.518
25 C 0.074 3.926
26 C -0.192 4.192
27 C -0.164 4.164
28 C -0.125 4.125
29 C 0.054 3.946
30 H 0.100 0.900
31 H 0.049 0.951
32 H 0.043 0.957
33 H 0.110 0.890
34 H 0.049 0.951
35 H 0.051 0.949
36 H 0.097 0.903
37 H 0.026 0.974
38 H 0.084 0.916
39 H 0.063 0.937
40 H 0.031 0.969
41 H 0.027 0.973
42 H 0.060 0.940
43 H 0.263 0.737
44 H 0.082 0.918
45 H 0.122 0.878
46 H 0.085 0.915
47 H 0.032 0.968
48 H 0.076 0.924
49 H 0.106 0.894
50 H 0.100 0.900
51 H 0.102 0.898
52 H 0.094 0.906
53 H 0.064 0.936
54 H 0.092 0.908
55 H 0.096 0.904
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.789 10.811 -19.089 23.280
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.196 4.196
2 C -0.022 4.022
3 C -0.190 4.190
4 C -0.082 4.082
5 N -0.166 5.166
6 N -0.191 5.191
7 C -0.005 4.005
8 N -0.187 5.187
9 C -0.092 4.092
10 C 0.132 3.868
11 H 0.014 0.986
12 C -0.213 4.213
13 C -0.552 4.552
14 H 0.087 0.913
15 C -0.184 4.184
16 N -0.559 5.559
17 Si 0.791 3.209
18 H -0.186 1.186
19 H -0.209 1.209
20 H -0.206 1.206
21 N -0.157 5.157
22 C -0.006 4.006
23 C -0.072 4.072
24 N -0.240 5.240
25 C -0.054 4.054
26 C -0.211 4.211
27 C -0.182 4.182
28 C -0.164 4.164
29 C -0.073 4.073
30 H 0.118 0.882
31 H 0.069 0.931
32 H 0.062 0.938
33 H 0.128 0.872
34 H 0.069 0.931
35 H 0.070 0.930
36 H 0.116 0.884
37 H 0.045 0.955
38 H 0.102 0.898
39 H 0.081 0.919
40 H 0.050 0.950
41 H 0.046 0.954
42 H 0.079 0.921
43 H 0.072 0.928
44 H 0.100 0.900
45 H 0.140 0.860
46 H 0.103 0.897
47 H 0.050 0.950
48 H 0.094 0.906
49 H 0.124 0.876
50 H 0.118 0.882
51 H 0.120 0.880
52 H 0.112 0.888
53 H 0.082 0.918
54 H 0.110 0.890
55 H 0.114 0.886
Dipole moment (debyes) X Y Z Total
from point charges 6.985 11.255 -18.595 22.831
hybrid contribution 0.985 -1.779 1.481 2.516
sum 7.969 9.476 -17.114 21.123
Atomic orbital electron populations
1.21794 0.92341 1.01901 1.03562 1.19848 0.97021 0.96203 0.89118
1.21751 1.00828 0.92965 1.03488 1.25586 0.96042 0.88237 0.98303
1.73811 1.21156 1.22499 0.99137 1.74610 1.12549 1.05301 1.26645
1.22808 0.98936 0.95995 0.82761 1.59259 1.14232 1.07224 1.38009
1.22150 0.93192 1.00184 0.93674 1.19013 0.89999 0.87763 0.90020
0.98557 1.22217 1.00169 0.98675 1.00231 1.21232 0.94580 1.00997
1.38358 0.91329 1.25724 0.95952 1.01092 0.95644 1.70061 1.10613
1.31786 1.43484 0.85391 0.79168 0.78731 0.77646 1.18596 1.20897
1.20643 1.46455 1.39224 1.23037 1.06962 1.21909 0.96995 0.95913
0.85767 1.22163 0.93756 0.99121 0.92183 1.62719 1.32059 1.02357
1.26860 1.21220 0.94770 0.89484 0.99936 1.22899 0.97497 1.00085
1.00667 1.22255 0.99299 0.95860 1.00819 1.21092 1.01840 0.94433
0.98997 1.22380 0.87349 1.01037 0.96553 0.88180 0.93133 0.93815
0.87184 0.93140 0.92950 0.88389 0.95521 0.89756 0.91859 0.95011
0.95393 0.92106 0.92825 0.89958 0.86047 0.89672 0.94956 0.90611
0.87581 0.88212 0.87955 0.88785 0.91789 0.88972 0.88555
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.73 9.17 71.98 0.66 -2.07 16
2 C 0.00 -0.02 3.28 -11.54 -0.04 -0.06 16
3 C -0.13 -2.30 9.17 71.98 0.66 -1.64 16
4 C 0.19 6.03 6.58 137.64 0.91 6.94 16
5 N -0.33 -13.33 12.18 -49.54 -0.60 -13.93 16
6 N -0.35 -16.01 9.73 -58.00 -0.56 -16.57 16
7 C 0.35 15.05 6.21 260.11 1.62 16.66 16
8 N -0.46 -20.61 4.77 -711.00 -3.39 -24.00 16
9 C 0.06 2.28 8.67 127.69 1.11 3.39 16
10 C 0.24 12.49 2.32 44.17 0.10 12.59 16
11 H 0.00 -0.21 8.11 -2.39 -0.02 -0.23 16
12 C -0.15 -8.27 8.20 71.98 0.59 -7.68 16
13 C -0.51 -27.55 7.82 25.60 0.20 -27.35 16
14 H 0.07 3.58 6.80 -2.91 -0.02 3.56 16
15 C 0.02 0.82 5.30 84.65 0.45 1.27 16
16 N -0.92 -53.20 11.32 21.45 0.24 -52.96 16
17 Si 0.97 42.76 29.54 68.60 2.03 44.78 16
18 H -0.26 -11.06 7.11 99.48 0.71 -10.36 16
19 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16
20 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16
21 N -0.46 -15.87 2.81 -514.85 -1.45 -17.32 16
22 C 0.12 3.11 5.77 86.38 0.50 3.61 16
23 C 0.06 1.29 4.35 86.30 0.38 1.66 16
24 N -0.52 -9.61 5.02 -900.91 -4.53 -14.14 16
25 C 0.07 1.51 5.83 85.39 0.50 2.00 16
26 C -0.19 -4.39 9.37 26.69 0.25 -4.14 16
27 C -0.16 -3.46 9.29 26.74 0.25 -3.21 16
28 C -0.13 -2.08 5.54 29.75 0.16 -1.91 16
29 C 0.05 0.79 6.02 86.27 0.52 1.31 16
30 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16
31 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16
32 H 0.04 0.97 8.14 -2.38 -0.02 0.95 16
33 H 0.11 1.75 6.91 -2.39 -0.02 1.73 16
34 H 0.05 1.07 8.14 -2.39 -0.02 1.06 16
35 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16
36 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16
37 H 0.03 1.15 6.51 -2.39 -0.02 1.13 16
38 H 0.08 3.51 6.31 -2.39 -0.02 3.49 16
39 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16
40 H 0.03 1.64 6.58 -2.39 -0.02 1.63 16
41 H 0.03 1.50 5.94 -2.39 -0.01 1.48 16
42 H 0.06 3.56 6.07 -2.38 -0.01 3.55 16
43 H 0.26 14.41 8.31 -92.70 -0.77 13.64 16
44 H 0.08 2.59 6.58 -2.38 -0.02 2.58 16
45 H 0.12 2.56 7.16 -2.39 -0.02 2.54 16
46 H 0.08 1.75 8.08 -2.39 -0.02 1.73 16
47 H 0.03 0.91 6.04 -2.39 -0.01 0.90 16
48 H 0.08 1.80 6.15 -2.39 -0.01 1.78 16
49 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16
50 H 0.10 2.45 8.06 -2.91 -0.02 2.43 16
51 H 0.10 2.14 8.06 -2.91 -0.02 2.11 16
52 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16
53 H 0.06 1.21 7.16 -2.39 -0.02 1.19 16
54 H 0.09 1.15 8.08 -2.39 -0.02 1.13 16
55 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16
Total: -1.00 -68.69 417.91 1.40 -67.29
By element:
Atomic # 1 Polarization: 24.60 SS G_CDS: 0.86 Total: 25.46 kcal
Atomic # 6 Polarization: -7.42 SS G_CDS: 8.81 Total: 1.39 kcal
Atomic # 7 Polarization: -128.63 SS G_CDS: -10.29 Total: -138.93 kcal
Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.78 kcal
Total: -68.69 1.40 -67.29 kcal
The number of atoms in the molecule is 55
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001691645942.mol2 55
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 164.256 kcal
(2) G-P(sol) polarization free energy of solvation -68.694 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.561 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.402 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.293 kcal
(6) G-S(sol) free energy of system = (1) + (5) 96.963 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.00 seconds