Wall clock time and date at job start Wed Apr 1 2020 05:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86804 * 120.00025 * 2 1 4 4 H 1.48503 * 109.46656 * 269.99394 * 3 2 1 5 5 H 1.48496 * 109.47259 * 29.99703 * 3 2 1 6 6 H 1.48494 * 109.46845 * 149.99516 * 3 2 1 7 7 C 1.38795 * 119.99837 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00066 * 180.02562 * 7 2 1 9 9 S 1.76206 * 119.99962 * 0.02562 * 7 2 1 10 10 C 1.81003 * 99.99904 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47228 * 179.97438 * 10 9 7 12 12 O 1.21279 * 119.99697 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00137 * 179.97438 * 11 10 9 14 14 C 1.46496 * 119.99867 * 179.97438 * 13 11 10 15 15 C 1.53002 * 109.47030 * 180.02562 * 14 13 11 16 16 N 1.46506 * 109.47035 * 180.02562 * 15 14 13 17 17 C 1.34777 * 119.99873 * 179.97438 * 16 15 14 18 18 O 1.21704 * 120.00041 * 0.02562 * 17 16 15 19 19 C 1.46566 * 119.99905 * 180.02562 * 17 16 15 20 20 C 1.36678 * 125.44940 * 180.02562 * 19 17 16 21 21 C 1.37537 * 113.28627 * 180.02562 * 20 19 17 22 22 Cl 1.73593 * 122.46011 * 179.97438 * 21 20 19 23 23 C 1.33878 * 115.07779 * 359.97438 * 21 20 19 24 24 S 1.70615 * 110.95880 * 359.72527 * 23 21 20 25 25 H 0.97002 * 119.99546 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.47226 * 59.99925 * 10 9 7 27 27 H 1.09004 * 109.46834 * 300.00280 * 10 9 7 28 28 H 0.96999 * 120.00047 * 0.02562 * 13 11 10 29 29 H 1.09004 * 109.47074 * 60.00441 * 14 13 11 30 30 H 1.09004 * 109.47714 * 300.00350 * 14 13 11 31 31 H 1.09004 * 109.46930 * 60.00232 * 15 14 13 32 32 H 1.09000 * 109.47312 * 300.00176 * 15 14 13 33 33 H 0.96999 * 120.00080 * 0.02562 * 16 15 14 34 34 H 1.07995 * 123.36053 * 0.03979 * 20 19 17 35 35 H 1.07999 * 124.51757 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4478 2.6527 0.6999 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 3.0902 -1.2021 0.0010 9 16 1.1292 -2.7280 0.0005 10 6 2.5157 -3.8915 0.0021 11 6 1.9873 -5.3027 0.0030 12 8 0.7910 -5.5022 0.0030 13 7 2.8440 -6.3431 0.0037 14 6 2.3302 -7.7150 0.0051 15 6 3.5022 -8.6986 0.0063 16 7 2.9884 -10.0706 0.0071 17 6 3.8451 -11.1110 0.0077 18 8 5.0456 -10.9107 0.0081 19 6 3.3311 -12.4835 0.0079 20 6 4.0958 -13.6164 0.0090 21 6 3.3529 -14.7739 0.0084 22 17 4.0823 -16.3491 0.0089 23 6 2.0259 -14.5964 0.0074 24 16 1.6322 -12.9363 0.0148 25 1 -0.4849 0.8401 -0.0004 26 1 3.1237 -3.7310 0.8925 27 1 3.1250 -3.7317 -0.8875 28 1 3.8008 -6.1836 0.0040 29 1 1.7214 -7.8759 -0.8846 30 1 1.7217 -7.8744 0.8954 31 1 4.1107 -8.5375 0.8963 32 1 4.1110 -8.5395 -0.8837 33 1 2.0316 -10.2301 0.0064 34 1 5.1757 -13.6040 0.0105 35 1 1.3014 -15.3973 0.0072 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001703108125.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:59 Heat of formation + Delta-G solvation = -48.679444 kcal Electronic energy + Delta-G solvation = -21126.416501 eV Core-core repulsion = 17403.313769 eV Total energy + Delta-G solvation = -3723.102732 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 348.016 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.34068 -39.27096 -38.55044 -36.60688 -36.03243 -34.10941 -32.45285 -31.08364 -30.00935 -28.13367 -25.69580 -25.43975 -23.17906 -21.94590 -20.47591 -20.08960 -19.28577 -17.90764 -17.01205 -16.63201 -16.37433 -16.32617 -15.67116 -15.60772 -15.33774 -14.82323 -14.52199 -14.23989 -13.96092 -13.91461 -13.80544 -13.40133 -13.22761 -12.59710 -12.51080 -12.15144 -11.98311 -11.94965 -11.72876 -11.45439 -11.08191 -11.04808 -10.79268 -10.68023 -9.84802 -9.76702 -9.54387 -9.54284 -9.11857 -9.10831 -9.04469 -8.27894 -6.53486 -6.24225 -3.95232 -0.24725 0.57856 0.90454 1.52181 1.89247 2.37935 2.61075 2.98972 3.06964 3.21161 3.27320 3.32185 3.69867 4.09339 4.18031 4.27999 4.42987 4.53260 4.72372 4.95388 5.06054 5.10583 5.11298 5.25118 5.40513 5.51237 5.53668 5.64547 5.81020 5.84288 6.09648 6.42767 6.82842 7.54492 7.57324 7.58144 8.32849 8.48659 9.21372 10.83203 Molecular weight = 348.02amu Principal moments of inertia in cm(-1) A = 0.047174 B = 0.001392 C = 0.001353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.399534 B =20116.551096 C =20684.196324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.154 4.154 11 C 0.535 3.465 12 O -0.515 6.515 13 N -0.736 5.736 14 C 0.110 3.890 15 C 0.110 3.890 16 N -0.721 5.721 17 C 0.595 3.405 18 O -0.520 6.520 19 C -0.260 4.260 20 C -0.048 4.048 21 C -0.062 4.062 22 Cl -0.043 7.043 23 C -0.229 4.229 24 S 0.258 5.742 25 H 0.269 0.731 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.402 0.598 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.401 0.599 34 H 0.165 0.835 35 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.311 -31.819 0.031 32.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.685 4.685 8 H 0.091 0.909 9 S 0.167 5.833 10 C -0.304 4.304 11 C 0.321 3.679 12 O -0.389 6.389 13 N -0.392 5.392 14 C -0.015 4.015 15 C -0.014 4.014 16 N -0.374 5.374 17 C 0.380 3.620 18 O -0.397 6.397 19 C -0.381 4.381 20 C -0.081 4.081 21 C -0.102 4.102 22 Cl -0.015 7.015 23 C -0.367 4.367 24 S 0.525 5.475 25 H 0.078 0.922 26 H 0.110 0.890 27 H 0.110 0.890 28 H 0.236 0.764 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.236 0.764 34 H 0.182 0.818 35 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 3.685 -31.206 0.044 31.422 hybrid contribution 3.287 0.078 -0.015 3.287 sum 6.971 -31.128 0.030 31.899 Atomic orbital electron populations 1.70017 1.05962 1.27491 1.46815 1.24989 0.95027 0.99040 0.94469 0.86163 0.79419 0.81524 0.78371 1.20253 1.20738 1.19679 1.22868 0.94937 0.91598 1.59055 0.90865 1.85392 1.04824 0.96380 1.96745 1.23533 1.06704 0.95038 1.05144 1.20333 0.86420 0.86218 0.74937 1.90709 1.15335 1.85541 1.47320 1.45793 1.10306 1.04749 1.78396 1.21319 0.95429 0.81461 1.03313 1.21536 0.96537 0.79474 1.03847 1.45615 1.09871 1.05933 1.75956 1.16746 0.86050 0.82628 0.76582 1.90879 1.14473 1.85016 1.49338 1.24488 0.98041 0.97489 1.18114 1.20535 1.02232 0.88419 0.96947 1.19559 0.92043 0.88417 1.10172 1.98389 1.82866 1.23059 1.97166 1.25313 0.99180 1.03560 1.08685 1.83237 1.02968 0.95553 1.65790 0.92161 0.89028 0.89024 0.76407 0.90793 0.90803 0.90103 0.90112 0.76407 0.81765 0.80081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.83 13.22 55.49 0.73 -25.10 16 2 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.15 29.55 -169.99 -5.02 16.12 16 4 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.54 -15.04 9.50 30.94 0.29 -14.75 16 8 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 9 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 10 C -0.15 -2.96 6.16 36.00 0.22 -2.74 16 11 C 0.53 9.33 7.85 -10.99 -0.09 9.24 16 12 O -0.52 -11.04 15.86 5.56 0.09 -10.96 16 13 N -0.74 -8.71 5.56 -60.29 -0.33 -9.04 16 14 C 0.11 1.05 5.79 -4.04 -0.02 1.03 16 15 C 0.11 0.86 5.79 -4.04 -0.02 0.84 16 16 N -0.72 -5.32 5.55 -61.65 -0.34 -5.66 16 17 C 0.59 5.56 7.78 -12.90 -0.10 5.46 16 18 O -0.52 -6.68 16.84 5.19 0.09 -6.59 16 19 C -0.26 -1.94 6.45 -36.79 -0.24 -2.18 16 20 C -0.05 -0.36 9.89 -40.40 -0.40 -0.76 16 21 C -0.06 -0.40 6.25 -41.37 -0.26 -0.66 16 22 Cl -0.04 -0.28 29.10 -51.86 -1.51 -1.79 16 23 C -0.23 -1.12 10.78 29.20 0.31 -0.81 16 24 S 0.26 1.17 22.15 -107.50 -2.38 -1.21 16 25 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 26 H 0.09 1.62 8.14 -51.91 -0.42 1.20 16 27 H 0.09 1.62 8.14 -51.91 -0.42 1.20 16 28 H 0.40 3.61 8.47 -40.82 -0.35 3.26 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.40 2.12 7.59 -40.82 -0.31 1.81 16 34 H 0.16 1.23 8.06 -52.49 -0.42 0.81 16 35 H 0.18 0.51 8.06 -52.49 -0.42 0.08 16 LS Contribution 358.59 15.07 5.40 5.40 Total: -1.00 -35.95 358.59 -9.47 -45.41 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -3.58 Total: 0.54 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: -0.39 Total: -3.33 kcal Atomic # 7 Polarization: -39.86 SS G_CDS: 0.06 Total: -39.80 kcal Atomic # 8 Polarization: -17.72 SS G_CDS: 0.18 Total: -17.55 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: -0.42 SS G_CDS: -4.59 Total: -5.01 kcal Atomic # 17 Polarization: -0.28 SS G_CDS: -1.51 Total: -1.79 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -35.95 -9.47 -45.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001703108125.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.265 kcal (2) G-P(sol) polarization free energy of solvation -35.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds