Wall clock time and date at job start Wed Apr 1 2020 05:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86804 * 120.00025 * 2 1 4 4 H 1.48503 * 109.46656 * 269.99394 * 3 2 1 5 5 H 1.48496 * 109.47259 * 29.99703 * 3 2 1 6 6 H 1.48494 * 109.46845 * 149.99516 * 3 2 1 7 7 C 1.38795 * 119.99837 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00066 * 180.02562 * 7 2 1 9 9 S 1.76206 * 119.99962 * 0.02562 * 7 2 1 10 10 C 1.81003 * 99.99904 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47228 * 179.97438 * 10 9 7 12 12 O 1.21279 * 119.99697 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00137 * 179.97438 * 11 10 9 14 14 C 1.46496 * 119.99867 * 179.97438 * 13 11 10 15 15 C 1.53002 * 109.47030 * 180.02562 * 14 13 11 16 16 N 1.46506 * 109.47035 * 180.02562 * 15 14 13 17 17 C 1.34777 * 119.99873 * 179.97438 * 16 15 14 18 18 O 1.21704 * 120.00041 * 0.02562 * 17 16 15 19 19 C 1.46566 * 119.99905 * 180.02562 * 17 16 15 20 20 C 1.36678 * 125.44940 * 180.02562 * 19 17 16 21 21 C 1.37537 * 113.28627 * 180.02562 * 20 19 17 22 22 Cl 1.73593 * 122.46011 * 179.97438 * 21 20 19 23 23 C 1.33878 * 115.07779 * 359.97438 * 21 20 19 24 24 S 1.70615 * 110.95880 * 359.72527 * 23 21 20 25 25 H 0.97002 * 119.99546 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.47226 * 59.99925 * 10 9 7 27 27 H 1.09004 * 109.46834 * 300.00280 * 10 9 7 28 28 H 0.96999 * 120.00047 * 0.02562 * 13 11 10 29 29 H 1.09004 * 109.47074 * 60.00441 * 14 13 11 30 30 H 1.09004 * 109.47714 * 300.00350 * 14 13 11 31 31 H 1.09004 * 109.46930 * 60.00232 * 15 14 13 32 32 H 1.09000 * 109.47312 * 300.00176 * 15 14 13 33 33 H 0.96999 * 120.00080 * 0.02562 * 16 15 14 34 34 H 1.07995 * 123.36053 * 0.03979 * 20 19 17 35 35 H 1.07999 * 124.51757 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4478 2.6527 0.6999 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 3.0902 -1.2021 0.0010 9 16 1.1292 -2.7280 0.0005 10 6 2.5157 -3.8915 0.0021 11 6 1.9873 -5.3027 0.0030 12 8 0.7910 -5.5022 0.0030 13 7 2.8440 -6.3431 0.0037 14 6 2.3302 -7.7150 0.0051 15 6 3.5022 -8.6986 0.0063 16 7 2.9884 -10.0706 0.0071 17 6 3.8451 -11.1110 0.0077 18 8 5.0456 -10.9107 0.0081 19 6 3.3311 -12.4835 0.0079 20 6 4.0958 -13.6164 0.0090 21 6 3.3529 -14.7739 0.0084 22 17 4.0823 -16.3491 0.0089 23 6 2.0259 -14.5964 0.0074 24 16 1.6322 -12.9363 0.0148 25 1 -0.4849 0.8401 -0.0004 26 1 3.1237 -3.7310 0.8925 27 1 3.1250 -3.7317 -0.8875 28 1 3.8008 -6.1836 0.0040 29 1 1.7214 -7.8759 -0.8846 30 1 1.7217 -7.8744 0.8954 31 1 4.1107 -8.5375 0.8963 32 1 4.1110 -8.5395 -0.8837 33 1 2.0316 -10.2301 0.0064 34 1 5.1757 -13.6040 0.0105 35 1 1.3014 -15.3973 0.0072 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001703108125.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:25:58 Heat of formation + Delta-G solvation = -75.311091 kcal Electronic energy + Delta-G solvation = -21127.571336 eV Core-core repulsion = 17403.313769 eV Total energy + Delta-G solvation = -3724.257567 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 348.016 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.07899 -40.54094 -39.07666 -37.17661 -36.86561 -35.13181 -34.56941 -31.98844 -30.96727 -29.15139 -27.64017 -26.20597 -23.94399 -22.63329 -21.73095 -20.65303 -19.92133 -19.74703 -17.96798 -17.41672 -17.33430 -17.14661 -16.86639 -16.74109 -16.38844 -16.33330 -15.69378 -15.39882 -14.89179 -14.69010 -14.66130 -14.39569 -14.26104 -13.85930 -13.69027 -13.15112 -12.93441 -12.92962 -12.84877 -12.59513 -12.46551 -12.42442 -11.91914 -11.72452 -11.46148 -11.13060 -11.00570 -10.45325 -10.26391 -10.17747 -10.03877 -9.53154 -8.64690 -8.33650 -6.11161 -0.74620 0.16087 0.42852 0.99785 1.24604 1.40976 1.43488 1.47820 1.56546 1.60072 1.80600 1.95173 2.28388 2.49650 3.00844 3.33235 3.50714 3.65762 3.91446 3.99640 4.01258 4.08349 4.33113 4.37008 4.47849 4.54712 4.77172 4.79660 4.85604 4.88717 5.09093 5.36332 5.43656 6.21134 6.21392 6.45428 6.91126 7.08231 7.20863 8.75443 Molecular weight = 348.02amu Principal moments of inertia in cm(-1) A = 0.047174 B = 0.001392 C = 0.001353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.399534 B =20116.551096 C =20684.196324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.015 3.985 3 Si 0.997 3.003 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.259 1.259 7 C -0.548 4.548 8 H 0.083 0.917 9 S -0.149 6.149 10 C -0.132 4.132 11 C 0.538 3.462 12 O -0.561 6.561 13 N -0.711 5.711 14 C 0.113 3.887 15 C 0.119 3.881 16 N -0.712 5.712 17 C 0.595 3.405 18 O -0.563 6.563 19 C -0.289 4.289 20 C -0.055 4.055 21 C -0.079 4.079 22 Cl -0.048 7.048 23 C -0.220 4.220 24 S 0.320 5.680 25 H 0.271 0.729 26 H 0.111 0.889 27 H 0.111 0.889 28 H 0.419 0.581 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.412 0.588 34 H 0.154 0.846 35 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.093 -32.495 0.034 33.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.190 4.190 3 Si 0.819 3.181 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.183 1.183 7 C -0.695 4.695 8 H 0.101 0.899 9 S 0.078 5.922 10 C -0.283 4.283 11 C 0.324 3.676 12 O -0.439 6.439 13 N -0.367 5.367 14 C -0.011 4.011 15 C -0.004 4.004 16 N -0.364 5.364 17 C 0.382 3.618 18 O -0.443 6.443 19 C -0.409 4.409 20 C -0.089 4.089 21 C -0.119 4.119 22 Cl -0.020 7.020 23 C -0.359 4.359 24 S 0.587 5.413 25 H 0.080 0.920 26 H 0.129 0.871 27 H 0.130 0.870 28 H 0.256 0.744 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.249 0.751 34 H 0.172 0.828 35 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 4.488 -31.917 0.047 32.231 hybrid contribution 3.023 0.128 -0.016 3.025 sum 7.511 -31.789 0.031 32.664 Atomic orbital electron populations 1.70178 1.07924 1.28579 1.48030 1.26089 0.95933 1.03219 0.93748 0.84977 0.78220 0.76177 0.78761 1.19366 1.20353 1.18266 1.23219 0.95388 0.92094 1.58830 0.89904 1.85536 1.10472 0.99156 1.97062 1.23383 1.03631 0.94252 1.07011 1.19983 0.86128 0.86516 0.74994 1.90700 1.17252 1.86011 1.49937 1.45484 1.10632 1.04590 1.75951 1.21394 0.96064 0.80135 1.03515 1.21393 0.95642 0.79226 1.04187 1.45507 1.10372 1.05427 1.75139 1.16979 0.85591 0.83503 0.75748 1.90851 1.16215 1.85740 1.51510 1.24381 1.00253 0.96453 1.19848 1.20554 1.02098 0.89072 0.97142 1.19538 0.92591 0.87956 1.11819 1.98384 1.83101 1.23198 1.97296 1.25704 0.99052 1.04772 1.06413 1.83024 0.99869 0.94508 1.63883 0.92009 0.87069 0.87042 0.74366 0.90637 0.90646 0.89822 0.89833 0.75083 0.82800 0.77711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.16 13.22 21.65 0.29 -54.88 16 2 C 0.01 0.84 5.49 84.86 0.47 1.31 16 3 Si 1.00 42.99 29.55 68.60 2.03 45.02 16 4 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 5 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 6 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 7 C -0.55 -30.69 9.50 67.95 0.65 -30.05 16 8 H 0.08 4.30 7.80 -2.91 -0.02 4.28 16 9 S -0.15 -8.06 20.57 -56.49 -1.16 -9.22 16 10 C -0.13 -4.91 6.16 71.23 0.44 -4.47 16 11 C 0.54 18.14 7.85 87.66 0.69 18.83 16 12 O -0.56 -24.06 15.86 -3.03 -0.05 -24.11 16 13 N -0.71 -15.24 5.56 -463.06 -2.57 -17.81 16 14 C 0.11 1.93 5.79 86.38 0.50 2.43 16 15 C 0.12 1.64 5.79 86.38 0.50 2.14 16 16 N -0.71 -9.36 5.55 -467.17 -2.59 -11.95 16 17 C 0.59 10.70 7.78 86.41 0.67 11.37 16 18 O -0.56 -14.50 16.84 -4.36 -0.07 -14.57 16 19 C -0.29 -4.02 6.45 24.08 0.16 -3.87 16 20 C -0.05 -0.81 9.89 21.74 0.22 -0.59 16 21 C -0.08 -0.95 6.25 21.11 0.13 -0.82 16 22 Cl -0.05 -0.60 29.10 -2.72 -0.08 -0.68 16 23 C -0.22 -1.65 10.78 66.83 0.72 -0.93 16 24 S 0.32 2.15 22.15 -56.49 -1.25 0.90 16 25 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 26 H 0.11 3.72 8.14 -2.39 -0.02 3.70 16 27 H 0.11 3.72 8.14 -2.39 -0.02 3.70 16 28 H 0.42 6.29 8.47 -92.71 -0.79 5.50 16 29 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 30 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 32 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.41 3.49 7.59 -92.71 -0.70 2.79 16 34 H 0.15 2.46 8.06 -2.91 -0.02 2.44 16 35 H 0.21 0.49 8.06 -2.91 -0.02 0.47 16 Total: -1.00 -80.22 358.59 -0.66 -80.88 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -0.33 Total: 11.07 kcal Atomic # 6 Polarization: -9.78 SS G_CDS: 5.13 Total: -4.65 kcal Atomic # 7 Polarization: -79.76 SS G_CDS: -4.88 Total: -84.64 kcal Atomic # 8 Polarization: -38.56 SS G_CDS: -0.12 Total: -38.68 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Atomic # 16 Polarization: -5.91 SS G_CDS: -2.41 Total: -8.32 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -0.08 Total: -0.68 kcal Total: -80.22 -0.66 -80.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001703108125.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.571 kcal (2) G-P(sol) polarization free energy of solvation -80.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds