Wall clock time and date at job start Wed Apr 1 2020 05:39:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31126 * 1 3 3 Br 1.89105 * 119.99725 * 2 1 4 4 C 1.50697 * 120.00099 * 180.02562 * 2 1 3 5 5 N 1.46907 * 109.47003 * 114.99972 * 4 2 1 6 6 C 1.47960 * 110.99970 * 269.35874 * 5 4 2 7 7 C 1.53930 * 86.17948 * 222.41657 * 6 5 4 8 8 C 1.47965 * 110.99979 * 169.99884 * 5 4 2 9 9 H 1.08993 * 113.85770 * 23.25175 * 8 5 4 10 10 C 1.52995 * 113.75614 * 251.90178 * 8 5 4 11 11 N 1.46499 * 109.47595 * 58.93335 * 10 8 5 12 12 C 1.34778 * 120.00278 * 179.97438 * 11 10 8 13 13 O 1.21278 * 119.99748 * 0.02562 * 12 11 10 14 14 C 1.50697 * 120.00209 * 180.02562 * 12 11 10 15 15 S 1.80999 * 109.47181 * 180.02562 * 14 12 11 16 16 C 1.76199 * 99.99825 * 179.97438 * 15 14 12 17 17 H 1.08002 * 120.00405 * 0.02562 * 16 15 14 18 18 C 1.38803 * 119.99855 * 179.72221 * 16 15 14 19 19 N 1.31634 * 119.99756 * 0.27728 * 18 16 15 20 20 Si 1.86803 * 120.00005 * 180.27923 * 18 16 15 21 21 H 1.48498 * 109.47174 * 90.00123 * 20 18 16 22 22 H 1.48501 * 109.47062 * 210.00074 * 20 18 16 23 23 H 1.48504 * 109.46913 * 329.99873 * 20 18 16 24 24 H 1.08001 * 119.99865 * 179.97438 * 1 2 3 25 25 H 1.07999 * 120.00380 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47035 * 355.00213 * 4 2 1 27 27 H 1.09000 * 109.47102 * 234.99420 * 4 2 1 28 28 H 1.08998 * 113.75583 * 108.09835 * 6 5 4 29 29 H 1.09004 * 113.85783 * 336.74656 * 6 5 4 30 30 H 1.08994 * 113.73625 * 269.35930 * 7 6 5 31 31 H 1.09008 * 113.82959 * 138.09031 * 7 6 5 32 32 H 1.09008 * 109.47218 * 298.93167 * 10 8 5 33 33 H 1.09007 * 109.47175 * 178.93516 * 10 8 5 34 34 H 0.97000 * 119.99972 * 359.97438 * 11 10 8 35 35 H 1.08999 * 109.47278 * 59.99800 * 14 12 11 36 36 H 1.09002 * 109.46837 * 300.00183 * 14 12 11 37 37 H 0.97000 * 119.99219 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3113 0.0000 0.0000 3 35 2.2567 1.6377 0.0000 4 6 2.0648 -1.3051 -0.0006 5 7 2.8165 -1.4359 -1.2559 6 6 2.0091 -2.1225 -2.2884 7 6 3.2952 -2.8947 -2.6335 8 6 3.7515 -2.5812 -1.1972 9 1 3.4700 -3.3433 -0.4707 10 6 5.2220 -2.1716 -1.0930 11 7 5.4190 -1.3605 0.1109 12 6 6.6441 -0.8849 0.4101 13 8 7.5833 -1.1281 -0.3176 14 6 6.8468 -0.0510 1.6488 15 16 8.5864 0.4335 1.7719 16 6 8.5383 1.3703 3.2634 17 1 7.6063 1.4905 3.7958 18 6 9.6993 1.9485 3.7575 19 7 10.8353 1.8016 3.1089 20 14 9.6498 2.9352 5.3430 21 1 9.9044 2.0336 6.4952 22 1 10.6926 3.9916 5.3013 23 1 8.3132 3.5646 5.4927 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5401 0.9353 0.0004 26 1 1.3598 -2.1316 0.0886 27 1 2.7570 -1.3253 0.8412 28 1 1.6647 -1.4643 -3.0860 29 1 1.2157 -2.7500 -1.8824 30 1 3.9023 -2.4151 -3.4013 31 1 3.1345 -3.9565 -2.8208 32 1 5.5005 -1.5906 -1.9723 33 1 5.8446 -3.0645 -1.0355 34 1 4.6677 -1.1656 0.6927 35 1 6.5681 -0.6323 2.5278 36 1 6.2244 0.8420 1.5914 37 1 11.6466 2.2060 3.4541 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733202202.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:39:02 Heat of formation + Delta-G solvation = 19.898573 kcal Electronic energy + Delta-G solvation = -19895.863212 eV Core-core repulsion = 16654.386783 eV Total energy + Delta-G solvation = -3241.476429 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 348.025 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.63797 -38.78060 -35.47520 -34.17001 -32.38041 -30.75820 -29.97421 -29.49806 -27.57963 -25.42973 -24.78427 -23.37573 -20.44929 -19.98487 -19.62417 -17.81843 -16.78073 -16.46340 -16.12932 -15.82063 -15.05935 -14.94845 -14.76106 -14.36627 -14.18838 -13.83691 -13.42200 -13.02362 -12.55947 -12.46254 -12.25420 -12.10260 -11.69833 -11.65245 -11.45403 -11.06757 -11.02262 -11.01261 -10.97396 -10.71274 -10.21933 -9.76576 -9.42213 -9.29173 -9.17085 -9.02322 -8.75155 -8.17270 -6.43855 -6.17052 -3.86703 1.42920 1.59400 3.06046 3.21389 3.25427 3.29531 3.33431 3.46917 3.81702 4.07733 4.25140 4.29107 4.39810 4.64659 4.78293 4.84962 4.93152 5.03288 5.12453 5.18020 5.26087 5.31159 5.40528 5.55308 5.65292 5.66607 5.76206 5.78146 5.94539 5.96911 6.02274 6.22729 6.59983 6.73067 7.64389 7.80589 8.40148 8.72139 9.28328 10.90427 Molecular weight = 348.02amu Principal moments of inertia in cm(-1) A = 0.013235 B = 0.003270 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2115.020572 B = 8561.104498 C =10256.144308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.107 4.107 3 Br -0.046 7.046 4 C 0.057 3.943 5 N -0.462 5.462 6 C 0.002 3.998 7 C -0.134 4.134 8 C 0.018 3.982 9 H 0.086 0.914 10 C 0.143 3.857 11 N -0.731 5.731 12 C 0.533 3.467 13 O -0.520 6.520 14 C -0.152 4.152 15 S -0.060 6.060 16 C -0.534 4.534 17 H 0.072 0.928 18 C 0.074 3.926 19 N -0.868 5.868 20 Si 0.917 3.083 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.272 1.272 24 H 0.115 0.885 25 H 0.113 0.887 26 H 0.063 0.937 27 H 0.087 0.913 28 H 0.091 0.909 29 H 0.070 0.930 30 H 0.097 0.903 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.393 0.607 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.086 -8.335 -9.114 28.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.186 4.186 3 Br 0.038 6.962 4 C -0.072 4.072 5 N -0.184 5.184 6 C -0.126 4.126 7 C -0.172 4.172 8 C -0.091 4.091 9 H 0.104 0.896 10 C 0.018 3.982 11 N -0.386 5.386 12 C 0.319 3.681 13 O -0.394 6.394 14 C -0.303 4.303 15 S 0.167 5.833 16 C -0.683 4.683 17 H 0.090 0.910 18 C -0.136 4.136 19 N -0.503 5.503 20 Si 0.744 3.256 21 H -0.203 1.203 22 H -0.208 1.208 23 H -0.197 1.197 24 H 0.133 0.867 25 H 0.131 0.869 26 H 0.081 0.919 27 H 0.105 0.895 28 H 0.109 0.891 29 H 0.088 0.912 30 H 0.116 0.884 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.227 0.773 35 H 0.105 0.895 36 H 0.108 0.892 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -23.708 -7.454 -10.447 26.959 hybrid contribution -2.204 -0.080 2.497 3.331 sum -25.912 -7.534 -7.951 28.132 Atomic orbital electron populations 1.24103 0.94025 1.03461 0.97450 1.23964 0.95811 0.93281 1.05583 1.96849 1.76926 1.25126 1.97345 1.21835 0.97357 0.92981 0.95040 1.68609 1.10288 1.34381 1.05146 1.23944 0.95590 0.96516 0.96581 1.23334 0.96821 1.00840 0.96197 1.23787 0.94321 0.92696 0.98340 0.89640 1.21164 0.92618 0.95393 0.88987 1.45865 1.10548 1.55226 1.26920 1.20255 0.82011 0.79184 0.86659 1.90693 1.40540 1.57377 1.50831 1.23516 1.07960 1.01506 0.97310 1.85365 0.98473 1.66431 1.33059 1.22879 0.97704 1.37733 1.09935 0.90974 1.24983 0.94557 0.96105 0.97914 1.70025 0.99179 1.42681 1.38463 0.86187 0.78031 0.79365 0.82041 1.20299 1.20767 1.19689 0.86680 0.86903 0.91892 0.89488 0.89080 0.91226 0.88416 0.90493 0.90869 0.91156 0.77251 0.89495 0.89237 0.92243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 14.00 28.98 0.41 -0.57 16 2 C -0.11 -0.91 5.96 -36.06 -0.21 -1.12 16 3 Br -0.05 -0.53 33.73 -68.01 -2.29 -2.82 16 4 C 0.06 0.44 4.92 -4.97 -0.02 0.42 16 5 N -0.46 -3.93 5.83 -232.16 -1.35 -5.28 16 6 C 0.00 0.01 7.95 -2.77 -0.02 -0.01 16 7 C -0.13 -0.86 7.84 -25.80 -0.20 -1.06 16 8 C 0.02 0.14 3.38 -66.65 -0.23 -0.08 16 9 H 0.09 0.58 7.93 -51.93 -0.41 0.17 16 10 C 0.14 1.69 5.80 -4.04 -0.02 1.67 16 11 N -0.73 -10.39 5.50 -60.29 -0.33 -10.73 16 12 C 0.53 10.40 7.85 -10.99 -0.09 10.32 16 13 O -0.52 -12.18 15.86 5.56 0.09 -12.09 16 14 C -0.15 -3.22 6.16 36.00 0.22 -2.99 16 15 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 16 C -0.53 -15.55 9.50 30.94 0.29 -15.26 16 17 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 18 C 0.07 2.13 5.49 -17.43 -0.10 2.04 16 19 N -0.87 -26.58 13.22 55.49 0.73 -25.85 16 20 Si 0.92 21.78 29.55 -169.99 -5.02 16.76 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 24 H 0.12 0.51 7.84 -52.49 -0.41 0.10 16 25 H 0.11 0.70 8.05 -52.49 -0.42 0.27 16 26 H 0.06 0.36 7.03 -51.93 -0.37 0.00 16 27 H 0.09 0.71 6.40 -51.93 -0.33 0.38 16 28 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.34 7.48 -51.93 -0.39 -0.05 16 30 H 0.10 0.70 7.94 -51.93 -0.41 0.28 16 31 H 0.08 0.38 8.14 -51.92 -0.42 -0.05 16 32 H 0.07 0.98 7.91 -51.92 -0.41 0.57 16 33 H 0.07 0.85 8.14 -51.92 -0.42 0.42 16 34 H 0.39 4.80 6.54 -40.82 -0.27 4.53 16 35 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 36 H 0.09 1.80 8.14 -51.91 -0.42 1.38 16 37 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 348.40 15.07 5.25 5.25 Total: -1.00 -34.87 348.40 -10.19 -45.07 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -5.08 Total: 0.22 kcal Atomic # 6 Polarization: -6.67 SS G_CDS: 0.03 Total: -6.64 kcal Atomic # 7 Polarization: -40.91 SS G_CDS: -0.95 Total: -41.86 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: 0.09 Total: -12.09 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Atomic # 35 Polarization: -0.53 SS G_CDS: -2.29 Total: -2.82 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -34.87 -10.19 -45.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733202202.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.968 kcal (2) G-P(sol) polarization free energy of solvation -34.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds