Wall clock time and date at job start Wed Apr 1 2020 04:51:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 110.76257 * 2 1 4 4 C 1.55140 * 110.70211 * 236.80229 * 2 1 3 5 5 C 1.54912 * 101.65032 * 205.96251 * 4 2 1 6 6 N 1.47847 * 104.79453 * 37.07148 * 5 4 2 7 7 C 1.38583 * 110.99895 * 213.63360 * 6 5 4 8 8 N 1.31220 * 126.47114 * 22.21734 * 7 6 5 9 9 N 1.28530 * 109.85730 * 179.69452 * 8 7 6 10 10 C 1.30297 * 110.05405 * 0.44908 * 9 8 7 11 11 C 1.50693 * 126.34586 * 179.82236 * 10 9 8 12 12 C 1.53122 * 109.52342 * 299.69303 * 11 10 9 13 13 C 1.53044 * 109.27560 * 177.56137 * 12 11 10 14 14 N 1.46839 * 109.52137 * 300.81556 * 13 12 11 15 15 C 1.46902 * 110.99965 * 185.84150 * 14 13 12 16 16 C 1.50693 * 109.47448 * 169.99979 * 15 14 13 17 17 H 1.08001 * 120.00097 * 0.02562 * 16 15 14 18 18 C 1.37874 * 120.00374 * 179.97438 * 16 15 14 19 19 N 1.31518 * 119.99885 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00390 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47118 * 60.00014 * 20 18 16 22 22 H 1.48495 * 109.47412 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.46913 * 300.00234 * 20 18 16 24 24 C 1.46851 * 111.19734 * 61.74832 * 14 13 12 25 25 C 1.53033 * 109.52102 * 298.25250 * 24 14 13 26 26 N 1.36452 * 126.47340 * 202.17076 * 7 6 5 27 27 C 1.46493 * 127.13542 * 0.02562 * 26 7 6 28 28 C 1.47443 * 108.56974 * 335.90392 * 6 5 4 29 29 H 1.08997 * 109.89158 * 120.39634 * 28 6 5 30 30 C 1.53004 * 109.88862 * 241.42353 * 28 6 5 31 31 H 1.09011 * 109.46837 * 296.79922 * 1 2 3 32 32 H 1.08997 * 109.47552 * 56.79478 * 1 2 3 33 33 H 1.08999 * 109.47110 * 176.79912 * 1 2 3 34 34 H 1.08998 * 110.98947 * 324.05266 * 4 2 1 35 35 H 1.08996 * 110.99109 * 87.87241 * 4 2 1 36 36 H 1.08996 * 110.37338 * 278.24498 * 5 4 2 37 37 H 1.08996 * 110.37196 * 155.89499 * 5 4 2 38 38 H 1.08996 * 109.57424 * 179.52997 * 11 10 9 39 39 H 1.08991 * 109.50660 * 57.61760 * 12 11 10 40 40 H 1.09002 * 109.53387 * 297.51604 * 12 11 10 41 41 H 1.09000 * 109.45699 * 180.80339 * 13 12 11 42 42 H 1.08994 * 109.45543 * 60.83220 * 13 12 11 43 43 H 1.09003 * 109.46758 * 49.99933 * 15 14 13 44 44 H 1.09005 * 109.47341 * 290.00270 * 15 14 13 45 45 H 0.96999 * 120.00218 * 179.97438 * 19 18 16 46 46 H 1.08996 * 109.46367 * 58.27347 * 24 14 13 47 47 H 1.09005 * 109.45905 * 178.24111 * 24 14 13 48 48 H 1.09000 * 109.50397 * 299.24240 * 25 24 14 49 49 H 1.09003 * 109.50151 * 179.11909 * 25 24 14 50 50 H 1.08996 * 109.47443 * 270.01862 * 27 26 7 51 51 H 1.09002 * 109.47568 * 30.02432 * 27 26 7 52 52 H 1.09003 * 109.47341 * 150.02233 * 27 26 7 53 53 H 1.09004 * 109.46668 * 54.47839 * 30 28 6 54 54 H 1.08999 * 109.47195 * 174.47898 * 30 28 6 55 55 H 1.08991 * 109.46972 * 294.48347 * 30 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9164 1.0192 0.0000 4 6 2.0785 -0.7946 -1.2144 5 6 3.4651 -1.2466 -0.6920 6 7 3.2489 -1.5502 0.7387 7 6 4.3731 -1.2403 1.4875 8 7 5.3231 -0.3979 1.1561 9 7 6.2085 -0.3504 2.0866 10 6 5.8835 -1.1600 3.0544 11 6 6.6633 -1.3946 4.3224 12 6 8.0554 -1.9295 3.9754 13 6 8.8634 -2.1081 5.2629 14 7 8.9737 -0.8182 5.9559 15 6 9.8587 -0.9220 7.1238 16 6 10.1438 0.4563 7.6622 17 1 9.7106 1.3228 7.1848 18 6 10.9569 0.6111 8.7649 19 7 11.4840 -0.4441 9.3466 20 14 11.3097 2.3196 9.4327 21 1 10.0350 2.9676 9.8332 22 1 12.2044 2.2146 10.6133 23 1 11.9708 3.1349 8.3822 24 6 7.6518 -0.3075 6.3410 25 6 6.8078 -0.0752 5.0858 26 7 4.7008 -1.7529 2.7089 27 6 3.9426 -2.7345 3.4883 28 6 2.0756 -0.7905 1.2079 29 1 1.3132 -1.4763 1.5772 30 6 2.4910 0.1739 2.3207 31 1 -0.3633 0.4634 0.9174 32 1 -0.3634 0.5628 -0.8598 33 1 -0.3633 -1.0261 -0.0574 34 1 1.4458 -1.6539 -1.4366 35 1 2.1811 -0.1509 -2.0880 36 1 4.1930 -0.4430 -0.8036 37 1 3.7983 -2.1382 -1.2230 38 1 6.1390 -2.1199 4.9446 39 1 8.5647 -1.2218 3.3215 40 1 7.9610 -2.8901 3.4689 41 1 9.8600 -2.4753 5.0182 42 1 8.3605 -2.8264 5.9104 43 1 10.7942 -1.3979 6.8296 44 1 9.3736 -1.5203 7.8952 45 1 12.0564 -0.3351 10.1221 46 1 7.1548 -1.0343 6.9836 47 1 7.7686 0.6331 6.8794 48 1 7.2975 0.6618 4.4493 49 1 5.8213 0.2890 5.3729 50 1 3.2388 -2.2162 4.1394 51 1 3.3958 -3.3915 2.8120 52 1 4.6292 -3.3264 4.0936 53 1 3.3085 0.8035 1.9694 54 1 1.6419 0.8001 2.5946 55 1 2.8186 -0.3949 3.1908 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001772156179.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:38 Heat of formation + Delta-G solvation = 70.323048 kcal Electronic energy + Delta-G solvation = -31854.098424 eV Core-core repulsion = 27926.426926 eV Total energy + Delta-G solvation = -3927.671498 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.238 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -44.18157 -40.65704 -39.79067 -36.16651 -35.76892 -34.63937 -33.82631 -32.54916 -31.81224 -30.51280 -29.04933 -28.44184 -28.02125 -25.98420 -25.12554 -24.07296 -23.80218 -23.26772 -21.96196 -21.49435 -20.86974 -20.21046 -18.43437 -18.14885 -17.84559 -17.11619 -17.04868 -16.49224 -16.25782 -15.82124 -15.71512 -15.26494 -15.12343 -14.95326 -14.67596 -14.56078 -14.30278 -14.13698 -13.88590 -13.79113 -13.74917 -13.40275 -13.36216 -13.18985 -13.02292 -12.86197 -12.75122 -12.61421 -12.54751 -12.45854 -12.17757 -12.07010 -11.97747 -11.88067 -11.77141 -11.61985 -11.52629 -11.41433 -11.39316 -11.14572 -11.06285 -10.58979 -10.46298 -9.40695 -8.94642 -8.18718 -6.28119 0.71720 1.24685 1.41392 1.44664 1.52384 1.77385 2.41411 2.69192 3.13119 3.20762 3.32050 3.39617 3.60807 3.64383 3.69262 3.85387 3.86886 4.06312 4.12353 4.22668 4.23379 4.25614 4.29866 4.34351 4.43350 4.44229 4.53071 4.53934 4.56458 4.63599 4.67824 4.71131 4.78007 4.82453 4.83678 4.90414 4.93606 4.99573 5.02242 5.06683 5.09531 5.13574 5.13733 5.17805 5.22647 5.28516 5.34760 5.43346 5.45237 5.54730 5.61879 5.67766 6.08676 6.20351 6.39237 6.69944 6.88078 7.41235 7.74427 8.91812 Molecular weight = 347.24amu Principal moments of inertia in cm(-1) A = 0.023430 B = 0.002097 C = 0.002033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.775773 B =13348.192337 C =13766.620134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.106 4.106 3 H 0.067 0.933 4 C -0.113 4.113 5 C 0.045 3.955 6 N -0.449 5.449 7 C 0.362 3.638 8 N -0.358 5.358 9 N -0.317 5.317 10 C 0.195 3.805 11 C 0.013 3.987 12 C -0.089 4.089 13 C 0.058 3.942 14 N -0.549 5.549 15 C 0.209 3.791 16 C -0.523 4.523 17 H 0.060 0.940 18 C 0.002 3.998 19 N -0.933 5.933 20 Si 0.966 3.034 21 H -0.267 1.267 22 H -0.282 1.282 23 H -0.272 1.272 24 C 0.071 3.929 25 C -0.089 4.089 26 N -0.471 5.471 27 C 0.066 3.934 28 C 0.081 3.919 29 H 0.116 0.884 30 C -0.168 4.168 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.055 0.945 37 H 0.090 0.910 38 H 0.107 0.893 39 H 0.060 0.940 40 H 0.081 0.919 41 H 0.065 0.935 42 H 0.033 0.967 43 H 0.004 0.996 44 H -0.033 1.033 45 H 0.264 0.736 46 H 0.028 0.972 47 H 0.064 0.936 48 H 0.059 0.941 49 H 0.077 0.923 50 H 0.094 0.906 51 H 0.108 0.892 52 H 0.105 0.895 53 H 0.032 0.968 54 H 0.084 0.916 55 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.618 -6.205 -18.172 33.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.125 4.125 3 H 0.085 0.915 4 C -0.151 4.151 5 C -0.082 4.082 6 N -0.174 5.174 7 C 0.004 3.996 8 N -0.202 5.202 9 N -0.156 5.156 10 C -0.074 4.074 11 C -0.008 4.008 12 C -0.128 4.128 13 C -0.070 4.070 14 N -0.274 5.274 15 C 0.083 3.917 16 C -0.561 4.561 17 H 0.078 0.922 18 C -0.196 4.196 19 N -0.573 5.573 20 Si 0.791 3.209 21 H -0.192 1.192 22 H -0.208 1.208 23 H -0.197 1.197 24 C -0.057 4.057 25 C -0.128 4.128 26 N -0.164 5.164 27 C -0.075 4.075 28 C -0.025 4.025 29 H 0.134 0.866 30 C -0.226 4.226 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.114 0.886 35 H 0.109 0.891 36 H 0.074 0.926 37 H 0.108 0.892 38 H 0.125 0.875 39 H 0.079 0.921 40 H 0.100 0.900 41 H 0.084 0.916 42 H 0.051 0.949 43 H 0.022 0.978 44 H -0.015 1.015 45 H 0.073 0.927 46 H 0.046 0.954 47 H 0.082 0.918 48 H 0.077 0.923 49 H 0.095 0.905 50 H 0.113 0.887 51 H 0.127 0.873 52 H 0.123 0.877 53 H 0.052 0.948 54 H 0.103 0.897 55 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -26.642 -5.479 -19.090 33.231 hybrid contribution 0.132 0.055 1.857 1.863 sum -26.510 -5.425 -17.233 32.081 Atomic orbital electron populations 1.21704 0.91936 1.03004 1.02550 1.22418 0.97931 0.98606 0.93561 0.91488 1.22798 0.93928 1.00755 0.97644 1.23140 0.99466 1.01554 0.84043 1.60717 0.99010 1.53958 1.03726 1.22541 0.96413 0.94150 0.86463 1.74475 1.03690 1.18765 1.23266 1.73936 1.21981 1.19869 0.99773 1.24795 0.87237 0.95970 0.99396 1.19643 0.94259 0.99021 0.87892 1.21464 0.93200 1.01369 0.96749 1.22044 0.99829 0.90273 0.94865 1.61918 1.11760 1.26451 1.27290 1.19346 0.90683 0.95811 0.85908 1.21435 1.29230 0.93464 1.11969 0.92163 1.25877 0.95627 1.01066 0.97026 1.70070 1.33699 1.31128 1.22448 0.85481 0.78365 0.79418 0.77627 1.19163 1.20767 1.19701 1.21879 0.88340 0.99891 0.95616 1.21476 0.99427 0.96159 0.95736 1.46304 1.18812 1.34856 1.16458 1.22420 0.97245 0.91003 0.96815 1.22760 0.90587 0.93963 0.95229 0.86605 1.22355 1.01874 0.99782 0.98622 0.92199 0.91511 0.91174 0.88619 0.89108 0.92606 0.89157 0.87474 0.92114 0.90010 0.91643 0.94851 0.97827 1.01517 0.92716 0.95422 0.91795 0.92259 0.90490 0.88739 0.87334 0.87655 0.94841 0.89669 0.92902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.88 9.14 71.98 0.66 -0.22 16 2 C -0.11 -1.17 3.07 -9.61 -0.03 -1.20 16 3 H 0.07 0.97 7.86 -2.39 -0.02 0.95 16 4 C -0.11 -1.16 6.52 31.98 0.21 -0.95 16 5 C 0.04 0.75 6.63 86.77 0.58 1.33 16 6 N -0.45 -8.09 5.20 -672.18 -3.50 -11.59 16 7 C 0.36 8.81 4.68 260.11 1.22 10.03 16 8 N -0.36 -11.44 10.34 -58.00 -0.60 -12.04 16 9 N -0.32 -10.90 12.18 -49.54 -0.60 -11.51 16 10 C 0.19 5.39 6.58 137.64 0.91 6.30 16 11 C 0.01 0.34 2.62 -11.46 -0.03 0.31 16 12 C -0.09 -2.64 5.36 30.65 0.16 -2.47 16 13 C 0.06 2.06 5.46 86.33 0.47 2.53 16 14 N -0.55 -24.04 4.65 -900.94 -4.19 -28.23 16 15 C 0.21 11.22 4.72 85.55 0.40 11.63 16 16 C -0.52 -30.06 8.43 25.60 0.22 -29.84 16 17 H 0.06 3.43 7.12 -2.91 -0.02 3.41 16 18 C 0.00 0.12 5.46 84.65 0.46 0.58 16 19 N -0.93 -56.44 13.29 21.45 0.28 -56.16 16 20 Si 0.97 44.98 29.54 68.60 2.03 47.01 16 21 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 22 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 23 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 24 C 0.07 2.71 5.29 86.32 0.46 3.16 16 25 C -0.09 -2.78 5.36 30.65 0.16 -2.61 16 26 N -0.47 -10.25 2.46 -538.20 -1.32 -11.57 16 27 C 0.07 0.79 10.42 127.77 1.33 2.12 16 28 C 0.08 1.10 3.58 45.26 0.16 1.27 16 29 H 0.12 1.14 7.82 -2.39 -0.02 1.12 16 30 C -0.17 -2.91 7.88 71.98 0.57 -2.35 16 31 H 0.06 0.38 8.14 -2.38 -0.02 0.36 16 32 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 33 H 0.07 0.34 8.10 -2.39 -0.02 0.32 16 34 H 0.10 0.69 8.02 -2.39 -0.02 0.68 16 35 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.06 1.26 6.80 -2.39 -0.02 1.24 16 37 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.11 2.25 6.95 -2.39 -0.02 2.23 16 39 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 40 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 41 H 0.07 2.38 8.02 -2.39 -0.02 2.36 16 42 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.00 0.21 7.99 -2.39 -0.02 0.19 16 44 H -0.03 -1.88 8.12 -2.38 -0.02 -1.90 16 45 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 46 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 47 H 0.06 2.73 6.70 -2.38 -0.02 2.71 16 48 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 49 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 50 H 0.09 0.85 7.33 -2.39 -0.02 0.83 16 51 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 52 H 0.10 0.99 7.23 -2.39 -0.02 0.98 16 53 H 0.03 0.82 6.96 -2.38 -0.02 0.80 16 54 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 55 H 0.05 0.95 5.63 -2.39 -0.01 0.93 16 Total: -1.00 -73.78 416.84 0.86 -72.92 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: 0.85 Total: 11.56 kcal Atomic # 6 Polarization: -8.30 SS G_CDS: 7.91 Total: -0.40 kcal Atomic # 7 Polarization: -121.17 SS G_CDS: -9.92 Total: -131.09 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -73.78 0.86 -72.92 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772156179.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.244 kcal (2) G-P(sol) polarization free energy of solvation -73.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds