Wall clock time and date at job start Wed Apr 1 2020 04:51:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 110.72725 * 2 1 4 4 C 1.54938 * 110.67161 * 236.90375 * 2 1 3 5 5 H 1.09002 * 110.87707 * 322.58526 * 4 2 1 6 6 C 1.53004 * 110.72477 * 85.79221 * 4 2 1 7 7 C 1.54593 * 102.92496 * 204.15190 * 4 2 1 8 8 C 1.53993 * 105.14003 * 21.95472 * 7 4 2 9 9 N 1.47898 * 107.05803 * 1.22658 * 8 7 4 10 10 C 1.38580 * 111.00212 * 214.15153 * 9 8 7 11 11 N 1.31215 * 126.47616 * 239.89976 * 10 9 8 12 12 N 1.28525 * 109.86012 * 179.97438 * 11 10 9 13 13 C 1.30294 * 110.05711 * 359.97438 * 12 11 10 14 14 C 1.50697 * 126.35114 * 180.02562 * 13 12 11 15 15 C 1.53121 * 109.52067 * 59.64435 * 14 13 12 16 16 C 1.53038 * 109.27635 * 182.43962 * 15 14 13 17 17 N 1.46849 * 109.52199 * 59.17944 * 16 15 14 18 18 C 1.46911 * 110.99706 * 174.15786 * 17 16 15 19 19 C 1.50698 * 109.47043 * 294.20857 * 18 17 16 20 20 H 1.07995 * 120.00336 * 0.02562 * 19 18 17 21 21 C 1.37878 * 119.99772 * 180.02562 * 19 18 17 22 22 N 1.31516 * 119.99975 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 120.00207 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47061 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.47400 * 119.99858 * 23 21 19 26 26 H 1.48501 * 109.47196 * 240.00331 * 23 21 19 27 27 C 1.46840 * 111.20078 * 298.25605 * 17 16 15 28 28 C 1.53034 * 109.52523 * 61.74071 * 27 17 16 29 29 N 1.36455 * 126.47005 * 59.87343 * 10 9 8 30 30 C 1.46504 * 127.13623 * 359.76083 * 29 10 9 31 31 H 1.08992 * 109.47084 * 298.35664 * 1 2 3 32 32 H 1.09001 * 109.46829 * 58.35712 * 1 2 3 33 33 H 1.09002 * 109.47019 * 178.35527 * 1 2 3 34 34 H 1.08995 * 109.47315 * 174.95690 * 6 4 2 35 35 H 1.09001 * 109.46866 * 294.96489 * 6 4 2 36 36 H 1.09006 * 109.46950 * 54.95727 * 6 4 2 37 37 H 1.09003 * 110.30555 * 263.03977 * 7 4 2 38 38 H 1.09004 * 110.39385 * 140.91856 * 7 4 2 39 39 H 1.08992 * 109.91881 * 241.86985 * 8 7 4 40 40 H 1.08999 * 110.07829 * 120.66641 * 8 7 4 41 41 H 1.09007 * 109.52560 * 179.83192 * 14 13 12 42 42 H 1.08999 * 109.50312 * 302.37671 * 15 14 13 43 43 H 1.08998 * 109.50654 * 62.50243 * 15 14 13 44 44 H 1.08996 * 109.46926 * 299.16358 * 16 15 14 45 45 H 1.09007 * 109.46235 * 179.19200 * 16 15 14 46 46 H 1.08996 * 109.46970 * 54.21227 * 18 17 16 47 47 H 1.08997 * 109.46471 * 174.20994 * 18 17 16 48 48 H 0.96998 * 120.00097 * 179.97438 * 22 21 19 49 49 H 1.09003 * 109.46017 * 301.72926 * 27 17 16 50 50 H 1.08993 * 109.45865 * 181.75633 * 27 17 16 51 51 H 1.08997 * 109.50773 * 180.88559 * 28 27 17 52 52 H 1.09001 * 109.53522 * 60.77810 * 28 27 17 53 53 H 1.09004 * 109.47132 * 90.02632 * 30 29 10 54 54 H 1.08997 * 109.47230 * 210.02505 * 30 29 10 55 55 H 1.08996 * 109.47247 * 330.02733 * 30 29 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9158 1.0195 0.0000 4 6 2.0769 -0.7916 -1.2144 5 1 1.4572 -1.6643 -1.4202 6 6 2.1698 0.1072 -2.4492 7 6 3.4853 -1.2197 -0.7422 8 6 3.4279 -1.1647 0.7956 9 7 2.0543 -0.7589 1.1643 10 6 2.0578 0.0249 2.3072 11 7 1.4493 -0.2429 3.4385 12 7 1.6655 0.7003 4.2844 13 6 2.4188 1.6179 3.7477 14 6 2.8968 2.8828 4.4128 15 6 3.7211 2.5285 5.6536 16 6 4.1522 3.8166 6.3586 17 7 2.9629 4.5875 6.7427 18 6 3.3330 5.7622 7.5436 19 6 3.9144 5.3107 8.8585 20 1 4.0008 4.2567 9.0773 21 6 4.3361 6.2433 9.7823 22 7 4.2304 7.5269 9.5161 23 14 5.0574 5.6838 11.4120 24 1 5.0669 4.1998 11.4656 25 1 6.4470 6.1921 11.5388 26 1 4.2324 6.2147 12.5268 27 6 2.1806 4.9797 5.5635 28 6 1.6906 3.7264 4.8348 29 7 2.6950 1.2206 2.4687 30 6 3.5115 1.9284 1.4795 31 1 -0.3633 0.4881 0.9043 32 1 -0.3633 0.5391 -0.8749 33 1 -0.3633 -1.0273 -0.0295 34 1 2.6390 -0.4431 -3.2647 35 1 1.1688 0.4176 -2.7488 36 1 2.7678 0.9876 -2.2136 37 1 4.2374 -0.5258 -1.1178 38 1 3.7062 -2.2334 -1.0766 39 1 4.1440 -0.4323 1.1680 40 1 3.6498 -2.1465 1.2137 41 1 3.5125 3.4510 3.7154 42 1 3.1165 1.9270 6.3325 43 1 4.6044 1.9641 5.3548 44 1 4.7681 4.4112 5.6839 45 1 4.7272 3.5675 7.2505 46 1 4.0727 6.3522 7.0026 47 1 2.4472 6.3701 7.7275 48 1 4.5267 8.1831 10.1661 49 1 2.8058 5.5688 4.8926 50 1 1.3237 5.5753 5.8780 51 1 1.1233 4.0178 3.9509 52 1 1.0538 3.1434 5.5002 53 1 2.8776 2.5959 0.8957 54 1 4.2783 2.5105 1.9908 55 1 3.9862 1.2056 0.8160 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001772156181.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:41 Heat of formation + Delta-G solvation = 67.519295 kcal Electronic energy + Delta-G solvation = -31812.168255 eV Core-core repulsion = 27884.375177 eV Total energy + Delta-G solvation = -3927.793078 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.238 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -44.19548 -40.68285 -39.83142 -36.19780 -35.80475 -34.64007 -33.78750 -32.57842 -31.82757 -30.68151 -29.24304 -28.53676 -27.96308 -25.95117 -25.33288 -24.06061 -23.53699 -23.25623 -22.05138 -21.56245 -21.11526 -20.36901 -18.45319 -18.21840 -17.52717 -17.12810 -17.07828 -16.64332 -16.29153 -15.92454 -15.81505 -15.56767 -15.16040 -14.90279 -14.65032 -14.38259 -14.33744 -14.23106 -14.10581 -13.82674 -13.69734 -13.42616 -13.38255 -13.08624 -12.90974 -12.90693 -12.77933 -12.62776 -12.55981 -12.51772 -12.19745 -12.09785 -12.02123 -11.92803 -11.72482 -11.60419 -11.44155 -11.42538 -11.36128 -11.17500 -11.10830 -10.60518 -10.04382 -10.00871 -8.95180 -8.19661 -6.28760 0.60517 1.27627 1.40388 1.42049 1.55310 1.73803 2.32255 2.41016 3.12281 3.17328 3.31093 3.34868 3.49093 3.61369 3.68254 3.82336 3.83261 3.96486 4.02405 4.10329 4.14214 4.25226 4.28415 4.32268 4.41358 4.42475 4.50637 4.54283 4.57560 4.65041 4.67623 4.68540 4.69647 4.80581 4.81613 4.85289 4.91242 4.96071 4.97797 5.00409 5.12634 5.13703 5.16753 5.18575 5.21351 5.29187 5.34143 5.37354 5.38440 5.48705 5.61860 5.67734 6.08169 6.14953 6.38545 6.69311 6.88076 7.40800 7.73046 8.91324 Molecular weight = 347.24amu Principal moments of inertia in cm(-1) A = 0.025884 B = 0.002052 C = 0.002029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.487535 B =13643.277069 C =13794.527946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.061 3.939 3 H 0.069 0.931 4 C -0.083 4.083 5 H 0.088 0.912 6 C -0.140 4.140 7 C -0.118 4.118 8 C 0.028 3.972 9 N -0.434 5.434 10 C 0.342 3.658 11 N -0.316 5.316 12 N -0.321 5.321 13 C 0.203 3.797 14 C 0.012 3.988 15 C -0.091 4.091 16 C 0.071 3.929 17 N -0.550 5.550 18 C 0.209 3.791 19 C -0.521 4.521 20 H 0.060 0.940 21 C 0.002 3.998 22 N -0.933 5.933 23 Si 0.966 3.034 24 H -0.266 1.266 25 H -0.276 1.276 26 H -0.280 1.280 27 C 0.059 3.941 28 C -0.089 4.089 29 N -0.496 5.496 30 C 0.050 3.950 31 H 0.026 0.974 32 H 0.086 0.914 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.056 0.944 40 H 0.085 0.915 41 H 0.109 0.891 42 H 0.059 0.941 43 H 0.078 0.922 44 H 0.029 0.971 45 H 0.064 0.936 46 H -0.032 1.032 47 H 0.004 0.996 48 H 0.264 0.736 49 H 0.034 0.966 50 H 0.065 0.935 51 H 0.082 0.918 52 H 0.060 0.940 53 H 0.101 0.899 54 H 0.110 0.890 55 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.462 -14.623 -30.907 34.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.046 4.046 3 H 0.087 0.913 4 C -0.102 4.102 5 H 0.106 0.894 6 C -0.198 4.198 7 C -0.156 4.156 8 C -0.099 4.099 9 N -0.160 5.160 10 C -0.015 4.015 11 N -0.157 5.157 12 N -0.160 5.160 13 C -0.067 4.067 14 C -0.009 4.009 15 C -0.130 4.130 16 C -0.057 4.057 17 N -0.275 5.275 18 C 0.083 3.917 19 C -0.559 4.559 20 H 0.078 0.922 21 C -0.196 4.196 22 N -0.574 5.574 23 Si 0.791 3.209 24 H -0.190 1.190 25 H -0.202 1.202 26 H -0.205 1.205 27 C -0.069 4.069 28 C -0.128 4.128 29 N -0.192 5.192 30 C -0.091 4.091 31 H 0.045 0.955 32 H 0.105 0.895 33 H 0.083 0.917 34 H 0.092 0.908 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.112 0.888 38 H 0.111 0.889 39 H 0.074 0.926 40 H 0.103 0.897 41 H 0.127 0.873 42 H 0.078 0.922 43 H 0.096 0.904 44 H 0.047 0.953 45 H 0.082 0.918 46 H -0.015 1.015 47 H 0.022 0.978 48 H 0.073 0.927 49 H 0.052 0.948 50 H 0.084 0.916 51 H 0.100 0.900 52 H 0.079 0.921 53 H 0.119 0.881 54 H 0.129 0.871 55 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -0.963 -15.976 -29.443 33.512 hybrid contribution 1.762 1.882 0.036 2.579 sum 0.799 -14.093 -29.407 32.619 Atomic orbital electron populations 1.21660 0.93405 1.02801 1.01320 1.23254 0.96671 0.96396 0.88275 0.91267 1.22110 0.96129 0.98731 0.93237 0.89363 1.21786 1.02669 0.99170 0.96157 1.22546 0.97536 1.04364 0.91194 1.23198 0.86292 1.01937 0.98426 1.62043 1.21677 1.32615 0.99626 1.23360 0.97118 0.85331 0.95650 1.74410 1.21737 1.20693 0.98855 1.74131 1.16692 1.00540 1.24664 1.24879 0.99253 0.99407 0.83123 1.19691 0.97394 0.87639 0.96223 1.21499 0.99346 0.96896 0.95266 1.21877 0.91508 0.93741 0.98577 1.61913 1.22068 1.23773 1.19757 1.19348 0.93303 0.87148 0.91934 1.21499 1.39784 0.93226 1.01415 0.92171 1.25871 0.96486 0.94875 1.02381 1.70080 1.48933 1.01313 1.37058 0.85376 0.77953 0.78646 0.78903 1.19041 1.20198 1.20547 1.22034 0.97543 0.96250 0.91116 1.21462 0.96300 0.95164 0.99872 1.47383 1.40016 1.18856 1.12990 1.22729 0.96078 0.98855 0.91487 0.95501 0.89514 0.91719 0.90828 0.92011 0.91915 0.88796 0.88949 0.92566 0.89667 0.87312 0.92234 0.90360 0.95310 0.91766 1.01464 0.97810 0.92712 0.94784 0.91613 0.89979 0.92107 0.88079 0.87123 0.87392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.03 9.47 71.98 0.68 -1.35 16 2 C 0.06 0.79 2.11 45.26 0.10 0.88 16 3 H 0.07 0.78 5.39 -2.38 -0.01 0.77 16 4 C -0.08 -0.60 3.09 -9.59 -0.03 -0.63 16 5 H 0.09 0.73 8.05 -2.39 -0.02 0.71 16 6 C -0.14 -0.50 9.15 71.98 0.66 0.16 16 7 C -0.12 -0.72 6.51 31.47 0.20 -0.51 16 8 C 0.03 0.36 5.96 86.45 0.52 0.88 16 9 N -0.43 -8.27 5.06 -670.05 -3.39 -11.66 16 10 C 0.34 8.71 6.45 260.11 1.68 10.39 16 11 N -0.32 -10.96 12.23 -58.00 -0.71 -11.67 16 12 N -0.32 -11.39 12.18 -49.54 -0.60 -11.99 16 13 C 0.20 5.62 6.58 137.64 0.91 6.52 16 14 C 0.01 0.30 2.62 -11.46 -0.03 0.27 16 15 C -0.09 -2.82 5.36 30.65 0.16 -2.66 16 16 C 0.07 2.69 5.30 86.33 0.46 3.14 16 17 N -0.55 -23.91 4.65 -900.94 -4.19 -28.10 16 18 C 0.21 11.16 4.72 85.55 0.40 11.56 16 19 C -0.52 -29.87 8.43 25.60 0.22 -29.65 16 20 H 0.06 3.43 7.12 -2.91 -0.02 3.41 16 21 C 0.00 0.10 5.46 84.65 0.46 0.56 16 22 N -0.93 -56.25 13.29 21.45 0.28 -55.96 16 23 Si 0.97 44.97 29.54 68.60 2.03 46.99 16 24 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 25 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 26 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 27 C 0.06 2.05 5.46 86.33 0.47 2.52 16 28 C -0.09 -2.61 5.36 30.65 0.16 -2.44 16 29 N -0.50 -10.51 3.12 -538.18 -1.68 -12.19 16 30 C 0.05 0.50 8.82 127.77 1.13 1.63 16 31 H 0.03 0.56 8.03 -2.39 -0.02 0.54 16 32 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.06 1.03 8.13 -2.39 -0.02 1.01 16 34 H 0.07 0.15 8.14 -2.39 -0.02 0.13 16 35 H 0.06 0.24 8.14 -2.39 -0.02 0.22 16 36 H 0.06 0.16 8.13 -2.38 -0.02 0.14 16 37 H 0.09 0.23 7.85 -2.39 -0.02 0.22 16 38 H 0.09 0.42 8.14 -2.38 -0.02 0.40 16 39 H 0.06 0.68 5.34 -2.39 -0.01 0.67 16 40 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.11 2.18 6.94 -2.38 -0.02 2.17 16 42 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 43 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 44 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 45 H 0.06 2.72 6.70 -2.38 -0.02 2.71 16 46 H -0.03 -1.83 8.12 -2.39 -0.02 -1.85 16 47 H 0.00 0.22 7.99 -2.39 -0.02 0.20 16 48 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 49 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 50 H 0.07 2.37 8.01 -2.39 -0.02 2.35 16 51 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 52 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 53 H 0.10 0.70 7.59 -2.38 -0.02 0.69 16 54 H 0.11 0.86 7.22 -2.39 -0.02 0.85 16 55 H 0.11 0.69 5.29 -2.39 -0.01 0.68 16 Total: -1.00 -76.56 416.00 0.75 -75.81 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: 0.86 Total: 7.49 kcal Atomic # 6 Polarization: -6.87 SS G_CDS: 8.15 Total: 1.27 kcal Atomic # 7 Polarization: -121.29 SS G_CDS: -10.28 Total: -131.57 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 46.99 kcal Total: -76.56 0.75 -75.81 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772156181.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.329 kcal (2) G-P(sol) polarization free energy of solvation -76.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds