Wall clock time and date at job start Wed Apr 1 2020 05:03:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46496 * 109.47067 * 2 1 4 4 C 1.36743 * 127.13765 * 85.42473 * 3 2 1 5 5 C 1.50704 * 126.34632 * 359.97306 * 4 3 2 6 6 C 1.53112 * 109.52514 * 240.00441 * 5 4 3 7 7 C 1.53031 * 109.31300 * 182.46331 * 6 5 4 8 8 N 1.46846 * 109.52743 * 59.15780 * 7 6 5 9 9 C 1.46896 * 111.00227 * 174.16482 * 8 7 6 10 10 C 1.46850 * 111.19464 * 298.25884 * 8 7 6 11 11 C 1.53042 * 109.52084 * 61.74362 * 10 8 7 12 12 N 1.30284 * 107.30771 * 180.24063 * 4 3 2 13 13 N 1.28531 * 110.05644 * 359.55639 * 12 4 3 14 14 C 1.31226 * 109.85355 * 0.45210 * 13 12 4 15 15 N 1.38582 * 126.47179 * 179.69227 * 14 13 12 16 16 C 1.46897 * 111.00116 * 106.97933 * 15 14 13 17 17 C 1.50703 * 109.47236 * 298.53538 * 16 15 14 18 18 H 1.08002 * 119.99936 * 4.97411 * 17 16 15 19 19 C 1.37879 * 119.99901 * 184.98146 * 17 16 15 20 20 N 1.31518 * 119.99646 * 179.97438 * 19 17 16 21 21 Si 1.86793 * 120.00179 * 359.97438 * 19 17 16 22 22 H 1.48500 * 109.46991 * 90.00255 * 21 19 17 23 23 H 1.48499 * 109.47227 * 210.00151 * 21 19 17 24 24 H 1.48502 * 109.47355 * 330.00267 * 21 19 17 25 25 C 1.46900 * 111.00157 * 343.02835 * 15 14 13 26 26 C 1.52998 * 109.47460 * 195.52824 * 25 15 14 27 27 C 1.52996 * 117.49935 * 243.42027 * 26 25 15 28 28 C 1.52994 * 117.50299 * 174.75882 * 26 25 15 29 29 H 1.08998 * 109.47561 * 299.99992 * 1 2 3 30 30 H 1.09005 * 109.47092 * 60.00459 * 1 2 3 31 31 H 1.09000 * 109.47133 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47561 * 240.00008 * 2 1 3 33 33 H 1.09001 * 109.46693 * 119.99852 * 2 1 3 34 34 H 1.09003 * 109.57449 * 0.15979 * 5 4 3 35 35 H 1.09007 * 109.50459 * 62.49743 * 6 5 4 36 36 H 1.09001 * 109.50346 * 302.41840 * 6 5 4 37 37 H 1.09002 * 109.46874 * 179.17770 * 7 6 5 38 38 H 1.09005 * 109.45979 * 299.14097 * 7 6 5 39 39 H 1.09006 * 109.47379 * 59.99978 * 9 8 7 40 40 H 1.09005 * 109.47234 * 180.02562 * 9 8 7 41 41 H 1.09002 * 109.47128 * 299.99547 * 9 8 7 42 42 H 1.09000 * 109.45974 * 181.75173 * 10 8 7 43 43 H 1.08996 * 109.46344 * 301.72628 * 10 8 7 44 44 H 1.08998 * 109.50926 * 60.75575 * 11 10 8 45 45 H 1.09003 * 109.50104 * 180.83985 * 11 10 8 46 46 H 1.09002 * 109.46730 * 58.52885 * 16 15 14 47 47 H 1.08997 * 109.47669 * 178.53158 * 16 15 14 48 48 H 0.96998 * 119.99937 * 180.02562 * 20 19 17 49 49 H 1.09002 * 109.46822 * 315.52989 * 25 15 14 50 50 H 1.08996 * 109.47060 * 75.52672 * 25 15 14 51 51 H 1.09003 * 115.54371 * 29.08714 * 26 25 15 52 52 H 1.09000 * 117.49777 * 0.02562 * 27 26 25 53 53 H 1.09006 * 117.49914 * 145.01762 * 27 26 25 54 54 H 1.08997 * 117.50314 * 214.98095 * 28 26 25 55 55 H 1.09008 * 117.49507 * 0.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2115 2.1885 1.0866 5 6 1.9595 1.8232 2.5268 6 6 0.9148 2.7723 3.1203 7 6 0.7078 2.4365 4.5989 8 7 1.9820 2.5721 5.3161 9 6 1.7941 2.3922 6.7618 10 6 2.9866 1.6360 4.7954 11 6 3.2617 1.9481 3.3227 12 7 2.6483 3.3340 0.6457 13 7 2.7524 3.3026 -0.6350 14 6 2.3752 2.1287 -1.0842 15 7 2.3445 1.7249 -2.4095 16 6 3.4289 0.7763 -2.6962 17 6 4.7579 1.4452 -2.4566 18 1 4.7936 2.4445 -2.0483 19 6 5.9281 0.7816 -2.7587 20 7 7.0879 1.3657 -2.5501 21 14 5.8662 -0.9468 -3.4643 22 1 5.8160 -0.8748 -4.9467 23 1 7.0782 -1.6959 -3.0459 24 1 4.6553 -1.6438 -2.9613 25 6 2.4038 2.8811 -3.3138 26 6 1.9842 2.4504 -4.7206 27 6 3.0301 2.5538 -5.8325 28 6 1.8615 3.5413 -5.7863 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8932 -0.5138 0.8900 34 1 1.5946 0.7977 2.5850 35 1 -0.0278 2.6565 2.5853 36 1 1.2626 3.8011 3.0261 37 1 -0.0248 3.1203 5.0276 38 1 0.3462 1.4124 4.6914 39 1 1.3885 1.3989 6.9547 40 1 2.7533 2.4981 7.2689 41 1 1.1012 3.1464 7.1348 42 1 3.9091 1.7386 5.3668 43 1 2.6142 0.6157 4.8871 44 1 3.6470 2.9637 3.2316 45 1 3.9963 1.2437 2.9325 46 1 3.3354 -0.0907 -2.0421 47 1 3.3658 0.4556 -3.7359 48 1 7.9111 0.8990 -2.7629 49 1 1.7285 3.6579 -2.9550 50 1 3.4220 3.2690 -3.3411 51 1 1.2803 1.6195 -4.7675 52 1 4.0173 2.9282 -5.5616 53 1 3.0141 1.7911 -6.6111 54 1 1.0771 3.4280 -6.5346 55 1 2.0801 4.5659 -5.4852 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001772184813.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:52 Heat of formation + Delta-G solvation = 93.971272 kcal Electronic energy + Delta-G solvation = -32616.213202 eV Core-core repulsion = 28689.567168 eV Total energy + Delta-G solvation = -3926.646034 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.238 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.88319 -40.01122 -39.38597 -37.15549 -36.56340 -35.09071 -34.51769 -31.86551 -31.41486 -30.81505 -29.79932 -27.62870 -27.07697 -25.18743 -24.23393 -24.10754 -23.92390 -23.14874 -22.29098 -21.33028 -21.06574 -20.26910 -19.13873 -18.11868 -17.45616 -17.04141 -16.82352 -16.59408 -16.15622 -15.98917 -15.88536 -15.47139 -15.41608 -15.02774 -14.88817 -14.61139 -14.39484 -14.21859 -13.94836 -13.91746 -13.45491 -13.37005 -13.29312 -13.25947 -13.07115 -12.60473 -12.53180 -12.39844 -12.33145 -12.29885 -12.24818 -12.15369 -12.07404 -11.88522 -11.77545 -11.59649 -11.56390 -11.24617 -11.19553 -10.95325 -10.83731 -10.72639 -10.36619 -9.20965 -9.15539 -8.32668 -6.40276 0.92380 1.30785 1.33150 1.41929 1.44100 1.99146 2.29247 2.85625 3.01078 3.01818 3.07837 3.31075 3.61295 3.75650 3.83124 3.94840 3.99524 4.06134 4.08533 4.16228 4.18694 4.24041 4.29316 4.37270 4.40531 4.44263 4.53944 4.57891 4.60807 4.65275 4.71009 4.73611 4.75634 4.82115 4.87052 4.87961 4.92382 4.96817 4.97677 5.04915 5.07421 5.08562 5.09673 5.19229 5.22131 5.24028 5.28353 5.33389 5.42473 5.44192 5.76376 5.87775 6.15619 6.18755 6.20160 6.44669 6.69662 7.24035 7.94145 8.84378 Molecular weight = 347.24amu Principal moments of inertia in cm(-1) A = 0.012074 B = 0.003370 C = 0.003009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2318.464114 B = 8307.590945 C = 9303.019027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.093 3.907 3 N -0.473 5.473 4 C 0.179 3.821 5 C 0.016 3.984 6 C -0.097 4.097 7 C 0.065 3.935 8 N -0.565 5.565 9 C 0.027 3.973 10 C 0.068 3.932 11 C -0.105 4.105 12 N -0.325 5.325 13 N -0.371 5.371 14 C 0.384 3.616 15 N -0.442 5.442 16 C 0.174 3.826 17 C -0.550 4.550 18 H 0.031 0.969 19 C 0.016 3.984 20 N -0.946 5.946 21 Si 0.944 3.056 22 H -0.260 1.260 23 H -0.287 1.287 24 H -0.238 1.238 25 C 0.115 3.885 26 C -0.147 4.147 27 C -0.185 4.185 28 C -0.155 4.155 29 H 0.066 0.934 30 H 0.050 0.950 31 H 0.107 0.893 32 H 0.091 0.909 33 H 0.111 0.889 34 H 0.107 0.893 35 H 0.076 0.924 36 H 0.056 0.944 37 H 0.090 0.910 38 H 0.051 0.949 39 H 0.035 0.965 40 H 0.070 0.930 41 H 0.075 0.925 42 H 0.082 0.918 43 H 0.051 0.949 44 H 0.053 0.947 45 H 0.058 0.942 46 H 0.034 0.966 47 H 0.058 0.942 48 H 0.265 0.735 49 H 0.064 0.936 50 H 0.028 0.972 51 H 0.122 0.878 52 H 0.067 0.933 53 H 0.108 0.892 54 H 0.123 0.877 55 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.155 -7.291 10.620 22.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.028 4.028 3 N -0.167 5.167 4 C -0.090 4.090 5 C -0.005 4.005 6 C -0.136 4.136 7 C -0.062 4.062 8 N -0.291 5.291 9 C -0.120 4.120 10 C -0.060 4.060 11 C -0.144 4.144 12 N -0.164 5.164 13 N -0.214 5.214 14 C 0.026 3.974 15 N -0.165 5.165 16 C 0.048 3.952 17 C -0.589 4.589 18 H 0.050 0.950 19 C -0.182 4.182 20 N -0.585 5.585 21 Si 0.766 3.234 22 H -0.184 1.184 23 H -0.213 1.213 24 H -0.161 1.161 25 C -0.013 4.013 26 C -0.165 4.165 27 C -0.222 4.222 28 C -0.192 4.192 29 H 0.085 0.915 30 H 0.069 0.931 31 H 0.125 0.875 32 H 0.109 0.891 33 H 0.129 0.871 34 H 0.125 0.875 35 H 0.095 0.905 36 H 0.075 0.925 37 H 0.108 0.892 38 H 0.070 0.930 39 H 0.053 0.947 40 H 0.089 0.911 41 H 0.094 0.906 42 H 0.100 0.900 43 H 0.069 0.931 44 H 0.072 0.928 45 H 0.076 0.924 46 H 0.052 0.948 47 H 0.076 0.924 48 H 0.074 0.926 49 H 0.082 0.918 50 H 0.047 0.953 51 H 0.140 0.860 52 H 0.085 0.915 53 H 0.126 0.874 54 H 0.141 0.859 55 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -17.762 -5.680 10.420 21.361 hybrid contribution 1.272 -1.743 -0.359 2.188 sum -16.489 -7.424 10.061 20.694 Atomic orbital electron populations 1.22059 0.91551 1.04733 1.02642 1.22221 0.97558 0.77553 1.05468 1.46381 1.50504 1.14691 1.05133 1.25140 1.03451 0.88013 0.92399 1.19715 0.97630 1.01174 0.81984 1.21529 0.97544 0.98956 0.95603 1.22061 0.90923 1.00950 0.92301 1.61859 1.09327 1.53043 1.04845 1.22372 1.02606 1.00559 0.86491 1.21991 0.96325 0.94128 0.93528 1.21549 0.95699 1.02054 0.95083 1.73720 1.18685 1.20781 1.03198 1.74541 1.22435 1.20494 1.03941 1.22572 0.97401 0.88665 0.88759 1.59334 1.44614 1.16415 0.96105 1.20158 0.86087 0.91006 0.97961 1.21769 0.91696 1.02291 1.43100 0.95041 1.25894 0.94488 1.02648 0.95182 1.70118 0.98540 1.40166 1.49715 0.85768 0.78826 0.78945 0.79813 1.18426 1.21338 1.16065 1.21335 0.99544 0.89902 0.90513 1.22107 1.03089 1.02712 0.88626 1.23006 0.94120 1.03501 1.01598 1.23032 1.00617 0.94841 1.00729 0.91453 0.93109 0.87470 0.89117 0.87099 0.87544 0.90532 0.92498 0.89183 0.93038 0.94653 0.91146 0.90601 0.89968 0.93061 0.92790 0.92371 0.94848 0.92406 0.92574 0.91768 0.95328 0.86026 0.91468 0.87395 0.85879 0.89380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.79 10.24 71.98 0.74 -2.06 16 2 C 0.09 2.36 6.45 86.38 0.56 2.92 16 3 N -0.47 -17.12 2.81 -514.86 -1.45 -18.57 16 4 C 0.18 6.54 6.59 137.64 0.91 7.45 16 5 C 0.02 0.41 2.63 -11.46 -0.03 0.38 16 6 C -0.10 -2.19 5.36 30.64 0.16 -2.03 16 7 C 0.07 1.09 5.46 86.32 0.47 1.56 16 8 N -0.57 -10.80 4.91 -922.57 -4.53 -15.33 16 9 C 0.03 0.37 9.59 127.69 1.22 1.59 16 10 C 0.07 1.34 5.47 86.33 0.47 1.81 16 11 C -0.10 -2.82 5.36 30.65 0.16 -2.66 16 12 N -0.33 -15.08 12.18 -49.54 -0.60 -15.68 16 13 N -0.37 -18.81 11.00 -58.00 -0.64 -19.45 16 14 C 0.38 17.11 5.83 260.11 1.52 18.62 16 15 N -0.44 -18.64 4.68 -710.36 -3.33 -21.96 16 16 C 0.17 7.94 3.88 85.56 0.33 8.28 16 17 C -0.55 -31.60 8.08 25.60 0.21 -31.39 16 18 H 0.03 2.14 6.67 -2.91 -0.02 2.13 16 19 C 0.02 0.94 5.47 84.65 0.46 1.40 16 20 N -0.95 -60.21 13.96 21.45 0.30 -59.91 16 21 Si 0.94 42.26 27.37 68.60 1.88 44.14 16 22 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 23 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 24 H -0.24 -9.40 6.69 99.48 0.67 -8.74 16 25 C 0.11 4.79 4.57 86.30 0.39 5.18 16 26 C -0.15 -4.82 5.05 -10.80 -0.05 -4.88 16 27 C -0.19 -6.01 10.18 30.62 0.31 -5.70 16 28 C -0.15 -4.20 10.25 30.62 0.31 -3.89 16 29 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.05 1.13 8.14 -2.38 -0.02 1.11 16 31 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.09 2.50 6.16 -2.39 -0.01 2.48 16 33 H 0.11 2.21 7.44 -2.39 -0.02 2.19 16 34 H 0.11 2.08 7.07 -2.39 -0.02 2.07 16 35 H 0.08 1.55 8.14 -2.38 -0.02 1.54 16 36 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.09 1.30 8.12 -2.39 -0.02 1.28 16 38 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 39 H 0.03 0.40 8.14 -2.38 -0.02 0.38 16 40 H 0.07 0.92 8.09 -2.38 -0.02 0.90 16 41 H 0.08 0.90 8.14 -2.39 -0.02 0.89 16 42 H 0.08 1.54 8.09 -2.39 -0.02 1.52 16 43 H 0.05 0.82 8.14 -2.39 -0.02 0.81 16 44 H 0.05 1.80 8.14 -2.39 -0.02 1.79 16 45 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 46 H 0.03 1.47 5.68 -2.39 -0.01 1.46 16 47 H 0.06 2.51 6.58 -2.39 -0.02 2.49 16 48 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 49 H 0.06 2.68 7.81 -2.39 -0.02 2.67 16 50 H 0.03 1.45 6.19 -2.39 -0.01 1.44 16 51 H 0.12 3.59 8.14 -2.39 -0.02 3.57 16 52 H 0.07 2.64 8.03 -2.39 -0.02 2.62 16 53 H 0.11 3.02 8.14 -2.38 -0.02 3.00 16 54 H 0.12 2.54 8.14 -2.39 -0.02 2.52 16 55 H 0.09 2.46 8.14 -2.38 -0.02 2.44 16 Total: -1.00 -79.49 424.64 0.59 -78.90 By element: Atomic # 1 Polarization: 30.46 SS G_CDS: 0.81 Total: 31.27 kcal Atomic # 6 Polarization: -11.56 SS G_CDS: 8.15 Total: -3.41 kcal Atomic # 7 Polarization: -140.66 SS G_CDS: -10.25 Total: -150.90 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 1.88 Total: 44.14 kcal Total: -79.49 0.59 -78.90 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772184813.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.869 kcal (2) G-P(sol) polarization free energy of solvation -79.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds