Wall clock time and date at job start Wed Apr 1 2020 05:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46501 * 109.47239 * 2 1 4 4 C 1.36739 * 127.13760 * 88.50644 * 3 2 1 5 5 C 1.50699 * 126.34538 * 359.94697 * 4 3 2 6 6 N 1.46891 * 109.47392 * 90.00161 * 5 4 3 7 7 C 1.46850 * 110.99845 * 294.20605 * 6 5 4 8 8 C 1.53036 * 109.52478 * 174.15863 * 7 6 5 9 9 C 1.53126 * 109.27710 * 59.18264 * 8 7 6 10 10 C 1.53123 * 109.15820 * 302.34594 * 9 8 7 11 11 C 1.46842 * 111.00076 * 170.00206 * 6 5 4 12 12 N 1.30296 * 107.30471 * 179.97438 * 4 3 2 13 13 N 1.28526 * 110.05636 * 359.97438 * 12 4 3 14 14 C 1.31230 * 109.85573 * 359.74273 * 13 12 4 15 15 N 1.38583 * 126.46897 * 180.25527 * 14 13 12 16 16 C 1.46903 * 110.99784 * 107.16321 * 15 14 13 17 17 C 1.50699 * 109.47020 * 299.27813 * 16 15 14 18 18 H 1.07999 * 120.00193 * 4.71783 * 17 16 15 19 19 C 1.37878 * 119.99861 * 184.71964 * 17 16 15 20 20 N 1.31513 * 120.00184 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00238 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.46989 * 59.99911 * 21 19 17 23 23 H 1.48497 * 109.47463 * 179.97438 * 21 19 17 24 24 H 1.48493 * 109.46979 * 300.00155 * 21 19 17 25 25 C 1.46900 * 111.00238 * 343.21372 * 15 14 13 26 26 C 1.53000 * 109.47062 * 194.17263 * 25 15 14 27 27 C 1.52994 * 117.50142 * 243.03989 * 26 25 15 28 28 C 1.53003 * 117.49861 * 174.37729 * 26 25 15 29 29 H 1.09006 * 109.46980 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47044 * 299.99983 * 1 2 3 31 31 H 1.08998 * 109.47426 * 60.00078 * 1 2 3 32 32 H 1.08998 * 109.47576 * 120.00456 * 2 1 3 33 33 H 1.09009 * 109.47489 * 240.00024 * 2 1 3 34 34 H 1.09008 * 109.46813 * 210.00219 * 5 4 3 35 35 H 1.09000 * 109.46864 * 329.99727 * 5 4 3 36 36 H 1.08995 * 109.46473 * 294.17933 * 7 6 5 37 37 H 1.08999 * 109.46258 * 54.14566 * 7 6 5 38 38 H 1.08997 * 109.50480 * 299.24217 * 8 7 6 39 39 H 1.08996 * 109.50264 * 179.11953 * 8 7 6 40 40 H 1.08996 * 109.52661 * 182.43902 * 9 8 7 41 41 H 1.09002 * 109.52360 * 62.24734 * 9 8 7 42 42 H 1.09001 * 109.50486 * 297.71270 * 10 9 8 43 43 H 1.08996 * 109.50142 * 177.59104 * 10 9 8 44 44 H 1.09001 * 109.46078 * 305.84908 * 11 6 5 45 45 H 1.08997 * 109.46781 * 65.81984 * 11 6 5 46 46 H 1.09006 * 109.46810 * 59.27427 * 16 15 14 47 47 H 1.09000 * 109.47148 * 179.27407 * 16 15 14 48 48 H 0.97005 * 120.00346 * 180.02562 * 20 19 17 49 49 H 1.09004 * 109.46733 * 314.17541 * 25 15 14 50 50 H 1.08998 * 109.47162 * 74.17175 * 25 15 14 51 51 H 1.09003 * 115.55062 * 28.71045 * 26 25 15 52 52 H 1.09008 * 117.49650 * 359.97438 * 27 26 25 53 53 H 1.08997 * 117.50393 * 145.01751 * 27 26 25 54 54 H 1.08996 * 117.49516 * 214.98471 * 28 26 25 55 55 H 1.08995 * 117.49817 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2667 2.1690 1.0897 5 6 2.0873 1.7780 2.5340 6 7 3.3339 1.1885 3.0402 7 6 3.6286 -0.0809 2.3632 8 6 5.0010 -0.5913 2.8083 9 6 4.9985 -0.7897 4.3266 10 6 4.6414 0.5353 5.0060 11 6 3.2794 1.0130 4.4971 12 7 2.6867 3.3205 0.6478 13 7 2.7208 3.3138 -0.6370 14 6 2.3263 2.1460 -1.0872 15 7 2.2357 1.7633 -2.4161 16 6 3.3056 0.8194 -2.7661 17 6 4.6448 1.4786 -2.5584 18 1 4.6987 2.4687 -2.1304 19 6 5.8012 0.8177 -2.9148 20 7 5.7356 -0.3881 -3.4356 21 14 7.4612 1.6350 -2.6580 22 1 7.6483 1.9329 -1.2152 23 1 8.5387 0.7228 -3.1184 24 1 7.5161 2.8989 -3.4356 25 6 2.2552 2.9337 -3.3036 26 6 1.8048 2.5182 -4.7055 27 6 2.8166 2.6616 -5.8441 28 6 1.6303 3.6242 -5.7482 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.8934 -0.5139 -0.8900 34 1 1.8386 2.6619 3.1215 35 1 1.2812 1.0489 2.6155 36 1 2.8664 -0.8159 2.6217 37 1 3.6316 0.0750 1.2844 38 1 5.7655 0.1370 2.5377 39 1 5.2126 -1.5413 2.3176 40 1 5.9871 -1.1119 4.6536 41 1 4.2609 -1.5465 4.5939 42 1 5.4002 1.2814 4.7700 43 1 4.5961 0.3902 6.0853 44 1 3.0288 1.9635 4.9682 45 1 2.5189 0.2729 4.7456 46 1 3.2330 -0.0637 -2.1313 47 1 3.2034 0.5255 -3.8107 48 1 6.5491 -0.8533 -3.6860 49 1 1.5788 3.6953 -2.9154 50 1 3.2668 3.3366 -3.3515 51 1 1.1165 1.6740 -4.7473 52 1 3.8031 3.0525 -5.5945 53 1 2.7939 1.9121 -6.6351 54 1 0.8274 3.5075 -6.4761 55 1 1.8359 4.6479 -5.4353 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001772197604.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:59 Heat of formation + Delta-G solvation = 96.097073 kcal Electronic energy + Delta-G solvation = -33171.297355 eV Core-core repulsion = 29244.743502 eV Total energy + Delta-G solvation = -3926.553853 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.238 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.86233 -39.99716 -39.36177 -37.11924 -36.56446 -34.93435 -34.52575 -31.82208 -31.47800 -31.04527 -29.44050 -27.74444 -27.03116 -25.16831 -24.46629 -24.11590 -23.89716 -23.13039 -22.06241 -21.28671 -20.86502 -20.57072 -18.75455 -18.10968 -17.51745 -17.15513 -17.05994 -16.39873 -16.30714 -16.10864 -15.79311 -15.45200 -15.23194 -14.99987 -14.84593 -14.66975 -14.47978 -14.13190 -13.99895 -13.76823 -13.70600 -13.47419 -13.20217 -13.15830 -13.01609 -12.89003 -12.66203 -12.47215 -12.30927 -12.28716 -12.24486 -12.13922 -12.05548 -11.91767 -11.66085 -11.35707 -11.33145 -11.26321 -11.17789 -10.95741 -10.72226 -10.65172 -10.41487 -9.32580 -9.13928 -8.26943 -6.38250 0.89458 1.26255 1.27399 1.36464 1.47285 1.94446 2.30222 2.89373 2.96875 3.02932 3.12565 3.38308 3.61552 3.80595 3.88176 3.96970 3.99310 4.02598 4.06008 4.07627 4.18085 4.22764 4.25397 4.29611 4.37308 4.46543 4.55222 4.57773 4.59844 4.63179 4.70219 4.78095 4.78838 4.83655 4.89255 4.92979 4.94966 5.01996 5.04871 5.09687 5.15368 5.17956 5.19137 5.22311 5.25102 5.28919 5.34201 5.39698 5.45489 5.64373 5.73494 5.87874 5.99099 6.03140 6.14409 6.50454 6.74288 7.30401 7.94159 8.77658 Molecular weight = 347.24amu Principal moments of inertia in cm(-1) A = 0.010041 B = 0.004275 C = 0.003451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2787.816243 B = 6548.672922 C = 8110.734855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.093 3.907 3 N -0.468 5.468 4 C 0.176 3.824 5 C 0.157 3.843 6 N -0.554 5.554 7 C 0.055 3.945 8 C -0.119 4.119 9 C -0.113 4.113 10 C -0.115 4.115 11 C 0.060 3.940 12 N -0.316 5.316 13 N -0.370 5.370 14 C 0.391 3.609 15 N -0.455 5.455 16 C 0.217 3.783 17 C -0.549 4.549 18 H 0.043 0.957 19 C 0.035 3.965 20 N -0.910 5.910 21 Si 0.934 3.066 22 H -0.288 1.288 23 H -0.271 1.271 24 H -0.274 1.274 25 C 0.118 3.882 26 C -0.148 4.148 27 C -0.181 4.181 28 C -0.152 4.152 29 H 0.104 0.896 30 H 0.069 0.931 31 H 0.051 0.949 32 H 0.107 0.893 33 H 0.082 0.918 34 H 0.119 0.881 35 H 0.079 0.921 36 H 0.058 0.942 37 H 0.041 0.959 38 H 0.038 0.962 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.076 0.924 42 H 0.051 0.949 43 H 0.093 0.907 44 H 0.088 0.912 45 H 0.055 0.945 46 H 0.013 0.987 47 H 0.042 0.958 48 H 0.267 0.733 49 H 0.066 0.934 50 H 0.032 0.968 51 H 0.110 0.890 52 H 0.071 0.929 53 H 0.098 0.902 54 H 0.119 0.881 55 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.314 -3.744 12.425 17.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.028 4.028 3 N -0.163 5.163 4 C -0.093 4.093 5 C 0.027 3.973 6 N -0.281 5.281 7 C -0.073 4.073 8 C -0.157 4.157 9 C -0.150 4.150 10 C -0.153 4.153 11 C -0.067 4.067 12 N -0.156 5.156 13 N -0.214 5.214 14 C 0.033 3.967 15 N -0.178 5.178 16 C 0.092 3.908 17 C -0.588 4.588 18 H 0.061 0.939 19 C -0.166 4.166 20 N -0.549 5.549 21 Si 0.760 3.240 22 H -0.215 1.215 23 H -0.196 1.196 24 H -0.199 1.199 25 C -0.009 4.009 26 C -0.167 4.167 27 C -0.218 4.218 28 C -0.189 4.189 29 H 0.122 0.878 30 H 0.088 0.912 31 H 0.070 0.930 32 H 0.125 0.875 33 H 0.100 0.900 34 H 0.137 0.863 35 H 0.097 0.903 36 H 0.076 0.924 37 H 0.060 0.940 38 H 0.057 0.943 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.095 0.905 42 H 0.069 0.931 43 H 0.112 0.888 44 H 0.107 0.893 45 H 0.073 0.927 46 H 0.031 0.969 47 H 0.060 0.940 48 H 0.076 0.924 49 H 0.085 0.915 50 H 0.051 0.949 51 H 0.128 0.872 52 H 0.090 0.910 53 H 0.117 0.883 54 H 0.137 0.863 55 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -10.787 -2.422 12.169 16.441 hybrid contribution 1.284 -1.029 -0.264 1.666 sum -9.503 -3.451 11.905 15.619 Atomic orbital electron populations 1.22051 0.91515 1.04638 1.02742 1.22247 0.97517 0.78034 1.05022 1.46309 1.50567 1.14359 1.05065 1.24946 1.03690 0.88441 0.92227 1.20380 0.91429 1.01433 0.84009 1.61701 1.33773 1.26121 1.06466 1.22197 0.97695 0.89860 0.97499 1.21564 0.96088 1.00116 0.97954 1.21550 1.02386 0.98011 0.93085 1.21603 0.96505 0.96662 1.00549 1.22177 0.97840 1.01850 0.84826 1.73712 1.18139 1.20496 1.03223 1.74520 1.22781 1.20460 1.03677 1.22588 0.96982 0.88340 0.88788 1.59342 1.46119 1.16549 0.95821 1.19529 0.85166 0.89392 0.96723 1.21751 0.93024 1.02310 1.41753 0.93912 1.25370 1.01422 0.95247 0.94569 1.69965 1.29430 1.12806 1.42689 0.85992 0.81023 0.79033 0.77931 1.21477 1.19553 1.19897 1.21307 0.99570 0.89593 0.90469 1.22062 1.03280 1.02156 0.89202 1.22934 0.94411 1.03379 1.01118 1.23044 1.00138 0.94971 1.00769 0.87760 0.91198 0.93010 0.87491 0.89987 0.86289 0.90348 0.92429 0.94047 0.94321 0.91476 0.91299 0.90507 0.93055 0.88833 0.89322 0.92691 0.96900 0.94001 0.92420 0.91512 0.94926 0.87206 0.91023 0.88325 0.86277 0.88744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.19 10.24 71.98 0.74 -2.45 16 2 C 0.09 2.65 5.79 86.38 0.50 3.15 16 3 N -0.47 -17.34 2.40 -514.84 -1.24 -18.57 16 4 C 0.18 6.42 6.68 137.64 0.92 7.34 16 5 C 0.16 3.94 5.24 85.56 0.45 4.39 16 6 N -0.55 -14.37 4.65 -900.95 -4.19 -18.56 16 7 C 0.06 1.49 3.95 86.32 0.34 1.83 16 8 C -0.12 -3.15 6.09 30.65 0.19 -2.97 16 9 C -0.11 -2.11 6.00 30.68 0.18 -1.92 16 10 C -0.12 -2.03 6.09 30.65 0.19 -1.85 16 11 C 0.06 1.06 5.46 86.33 0.47 1.53 16 12 N -0.32 -14.31 12.18 -49.54 -0.60 -14.91 16 13 N -0.37 -18.17 11.01 -58.00 -0.64 -18.81 16 14 C 0.39 17.51 5.81 260.11 1.51 19.02 16 15 N -0.45 -20.02 4.71 -710.33 -3.35 -23.36 16 16 C 0.22 10.90 4.84 85.56 0.41 11.32 16 17 C -0.55 -31.11 7.55 25.60 0.19 -30.92 16 18 H 0.04 2.62 6.42 -2.91 -0.02 2.60 16 19 C 0.04 1.98 5.46 84.66 0.46 2.45 16 20 N -0.91 -52.17 13.29 21.45 0.28 -51.89 16 21 Si 0.93 46.57 29.54 68.60 2.03 48.59 16 22 H -0.29 -14.90 7.11 99.48 0.71 -14.19 16 23 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 24 H -0.27 -13.52 7.11 99.48 0.71 -12.81 16 25 C 0.12 4.95 4.56 86.30 0.39 5.34 16 26 C -0.15 -5.18 4.97 -10.79 -0.05 -5.23 16 27 C -0.18 -6.20 10.18 30.62 0.31 -5.89 16 28 C -0.15 -4.23 10.26 30.62 0.31 -3.92 16 29 H 0.10 1.57 8.14 -2.38 -0.02 1.55 16 30 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.11 2.56 4.97 -2.39 -0.01 2.55 16 33 H 0.08 2.71 6.14 -2.38 -0.01 2.70 16 34 H 0.12 2.65 7.99 -2.38 -0.02 2.63 16 35 H 0.08 1.48 7.96 -2.39 -0.02 1.46 16 36 H 0.06 1.22 7.52 -2.39 -0.02 1.20 16 37 H 0.04 1.45 5.27 -2.39 -0.01 1.44 16 38 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.09 1.39 8.02 -2.39 -0.02 1.37 16 45 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 46 H 0.01 0.68 6.23 -2.38 -0.01 0.67 16 47 H 0.04 2.22 7.35 -2.39 -0.02 2.20 16 48 H 0.27 14.55 8.31 -92.70 -0.77 13.78 16 49 H 0.07 2.74 7.86 -2.38 -0.02 2.72 16 50 H 0.03 1.59 6.26 -2.39 -0.01 1.58 16 51 H 0.11 3.70 8.14 -2.39 -0.02 3.68 16 52 H 0.07 2.81 8.03 -2.38 -0.02 2.79 16 53 H 0.10 3.11 8.14 -2.39 -0.02 3.09 16 54 H 0.12 2.62 8.14 -2.39 -0.02 2.60 16 55 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 Total: -1.00 -72.04 420.53 0.68 -71.36 By element: Atomic # 1 Polarization: 24.06 SS G_CDS: 0.86 Total: 24.92 kcal Atomic # 6 Polarization: -6.30 SS G_CDS: 7.52 Total: 1.22 kcal Atomic # 7 Polarization: -136.37 SS G_CDS: -9.73 Total: -146.10 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.59 kcal Total: -72.04 0.68 -71.36 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772197604.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.459 kcal (2) G-P(sol) polarization free energy of solvation -72.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds