Wall clock time and date at job start Wed Apr 1 2020 04:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46967 * 2 1 4 4 C 1.52992 * 109.47443 * 119.99808 * 2 1 3 5 5 N 1.46508 * 109.47179 * 65.24786 * 4 2 1 6 6 C 1.36736 * 127.13656 * 264.39048 * 5 4 2 7 7 C 1.50698 * 126.34648 * 0.03524 * 6 5 4 8 8 H 1.08993 * 115.55671 * 25.58207 * 7 6 5 9 9 C 1.52998 * 117.49597 * 171.25435 * 7 6 5 10 10 C 1.53002 * 117.49495 * 239.90928 * 7 6 5 11 11 H 1.09002 * 117.49989 * 0.02562 * 10 7 6 12 12 C 1.53001 * 117.49817 * 144.99804 * 10 7 6 13 13 N 1.30293 * 107.30453 * 180.02562 * 6 5 4 14 14 N 1.28537 * 110.05317 * 359.97438 * 13 6 5 15 15 C 1.31210 * 109.85812 * 359.97438 * 14 13 6 16 16 N 1.38587 * 126.47131 * 180.02562 * 15 14 13 17 17 C 1.46957 * 110.99512 * 61.46525 * 16 15 14 18 18 C 1.53054 * 109.36443 * 176.81268 * 17 16 15 19 19 N 1.46949 * 109.36431 * 58.39815 * 18 17 16 20 20 C 1.46905 * 110.99969 * 176.81737 * 19 18 17 21 21 C 1.50702 * 109.46516 * 293.79638 * 20 19 18 22 22 H 1.07995 * 120.00606 * 0.02562 * 21 20 19 23 23 C 1.37882 * 119.99551 * 179.97438 * 21 20 19 24 24 N 1.31511 * 120.00357 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 119.99813 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47223 * 60.00073 * 25 23 21 27 27 H 1.48504 * 109.47356 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.47214 * 300.00145 * 25 23 21 29 29 C 1.46957 * 110.88300 * 300.68092 * 19 18 17 30 30 C 1.46956 * 111.00398 * 297.66645 * 16 15 14 31 31 H 1.08995 * 109.47141 * 60.00174 * 1 2 3 32 32 H 1.09004 * 109.46525 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47241 * 299.99798 * 1 2 3 34 34 H 1.08999 * 109.47241 * 240.00202 * 2 1 3 35 35 H 1.08999 * 109.47569 * 180.02562 * 3 2 1 36 36 H 1.09007 * 109.46992 * 300.00359 * 3 2 1 37 37 H 1.08999 * 109.46975 * 60.00039 * 3 2 1 38 38 H 1.08998 * 109.47501 * 305.25300 * 4 2 1 39 39 H 1.08994 * 109.47384 * 185.24625 * 4 2 1 40 40 H 1.09000 * 117.50015 * 214.97670 * 9 7 6 41 41 H 1.09002 * 117.50161 * 359.97438 * 9 7 6 42 42 H 1.09002 * 109.46817 * 60.00016 * 12 10 7 43 43 H 1.08995 * 109.46952 * 179.97438 * 12 10 7 44 44 H 1.09000 * 109.47155 * 300.00404 * 12 10 7 45 45 H 1.08998 * 109.49037 * 296.77894 * 17 16 15 46 46 H 1.08997 * 109.48976 * 56.84378 * 17 16 15 47 47 H 1.09003 * 109.48708 * 298.43136 * 18 17 16 48 48 H 1.08999 * 109.50728 * 178.38055 * 18 17 16 49 49 H 1.08993 * 109.47118 * 53.79495 * 20 19 18 50 50 H 1.09003 * 109.47193 * 173.80396 * 20 19 18 51 51 H 0.96999 * 120.00602 * 179.97438 * 24 23 21 52 52 H 1.08998 * 109.49037 * 299.35289 * 29 19 18 53 53 H 1.08997 * 109.48976 * 179.28805 * 29 19 18 54 54 H 1.09002 * 109.48315 * 303.15311 * 30 16 15 55 55 H 1.08996 * 109.48835 * 63.19709 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 1.6576 -2.1341 1.1878 6 6 0.5609 -2.7180 1.7585 7 6 -0.4958 -2.0234 2.5783 8 1 -0.6237 -0.9600 2.3767 9 6 -1.7436 -2.8271 2.9494 10 6 -0.6985 -2.4988 4.0184 11 1 -0.0672 -3.3136 4.3730 12 6 -1.0651 -1.4449 5.0652 13 7 0.5986 -3.9862 1.4621 14 7 1.6364 -4.2412 0.7479 15 6 2.3216 -3.1402 0.5483 16 7 3.4981 -3.0216 -0.1745 17 6 3.2941 -3.4043 -1.5787 18 6 4.5926 -3.1843 -2.3584 19 7 5.6674 -3.9802 -1.7495 20 6 6.9144 -3.8545 -2.5158 21 6 6.7343 -4.4812 -3.8744 22 1 5.7882 -4.9278 -4.1420 23 6 7.7774 -4.4836 -4.7762 24 7 8.9294 -3.9393 -4.4506 25 14 7.5540 -5.2598 -6.4605 26 1 6.4566 -4.5676 -7.1830 27 1 8.8146 -5.1329 -7.2352 28 1 7.2134 -6.6965 -6.3022 29 6 5.8714 -3.5975 -0.3453 30 6 4.5729 -3.8176 0.4344 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 3.1300 1.4426 -0.0005 36 1 1.6766 1.9564 -0.8900 37 1 1.6766 1.9563 0.8900 38 1 1.6020 -0.2646 2.1367 39 1 3.1260 -0.6405 1.2974 40 1 -2.6925 -2.2923 2.9922 41 1 -1.8005 -3.8582 2.6003 42 1 -2.0033 -0.9658 4.7853 43 1 -1.1779 -1.9231 6.0381 44 1 -0.2758 -0.6950 5.1178 45 1 3.0117 -4.4557 -1.6318 46 1 2.5022 -2.7926 -2.0109 47 1 4.8604 -2.1281 -2.3283 48 1 4.4524 -3.4944 -3.3939 49 1 7.1645 -2.8000 -2.6323 50 1 7.7197 -4.3625 -1.9852 51 1 9.6633 -3.9412 -5.0848 52 1 6.1537 -2.5461 -0.2923 53 1 6.6632 -4.2092 0.0869 54 1 4.7133 -3.5071 1.4698 55 1 4.3050 -4.8736 0.4045 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001772329962.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:11 Heat of formation + Delta-G solvation = 92.017814 kcal Electronic energy + Delta-G solvation = -31986.466488 eV Core-core repulsion = 28059.735746 eV Total energy + Delta-G solvation = -3926.730743 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.238 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -44.14370 -40.33090 -38.75180 -37.99136 -36.75763 -34.60988 -34.26737 -32.08599 -31.51072 -29.83789 -28.72698 -28.20749 -27.79740 -26.74116 -24.93756 -24.68424 -23.70151 -22.60298 -21.93440 -21.50316 -20.87659 -20.44245 -18.60153 -18.47252 -17.67473 -17.38266 -16.73675 -16.65491 -16.03320 -15.95028 -15.81665 -15.54345 -15.38341 -15.03640 -14.90639 -14.81696 -14.23320 -14.03831 -13.96119 -13.64590 -13.49876 -13.31908 -13.15018 -13.02658 -12.83374 -12.76386 -12.74709 -12.61390 -12.51933 -12.36538 -12.32277 -12.26649 -12.19725 -12.02685 -11.83122 -11.70450 -11.64919 -11.47599 -11.26958 -11.08863 -10.91377 -10.61318 -9.98264 -9.87488 -9.07610 -8.20701 -6.30404 0.57533 1.14591 1.41101 1.44017 1.51778 1.63727 2.39926 2.57130 2.84756 3.10870 3.17934 3.20248 3.50577 3.65750 3.72432 3.77332 3.87580 3.94000 3.99976 4.04520 4.13344 4.14076 4.22675 4.24629 4.38465 4.40825 4.41927 4.45982 4.58531 4.60840 4.66893 4.75123 4.79852 4.84349 4.88787 4.91414 4.94028 4.95680 4.98567 5.00517 5.03459 5.16611 5.17972 5.20192 5.23018 5.23754 5.33224 5.35528 5.45507 5.52331 5.54505 5.64162 6.03044 6.16218 6.28327 6.57148 6.84373 7.38995 7.63674 8.90010 Molecular weight = 347.24amu Principal moments of inertia in cm(-1) A = 0.017612 B = 0.002411 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.429984 B =11609.529258 C =12136.699622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.106 4.106 3 C -0.138 4.138 4 C 0.112 3.888 5 N -0.452 5.452 6 C 0.224 3.776 7 C -0.091 4.091 8 H 0.150 0.850 9 C -0.142 4.142 10 C -0.125 4.125 11 H 0.088 0.912 12 C -0.119 4.119 13 N -0.327 5.327 14 N -0.346 5.346 15 C 0.344 3.656 16 N -0.456 5.456 17 C 0.087 3.913 18 C 0.078 3.922 19 N -0.548 5.548 20 C 0.212 3.788 21 C -0.525 4.525 22 H 0.061 0.939 23 C 0.004 3.996 24 N -0.932 5.932 25 Si 0.966 3.034 26 H -0.267 1.267 27 H -0.282 1.282 28 H -0.271 1.271 29 C 0.062 3.938 30 C 0.084 3.916 31 H 0.063 0.937 32 H 0.033 0.967 33 H 0.082 0.918 34 H 0.052 0.948 35 H 0.055 0.945 36 H 0.063 0.937 37 H 0.079 0.921 38 H 0.123 0.877 39 H 0.097 0.903 40 H 0.131 0.869 41 H 0.086 0.914 42 H 0.075 0.925 43 H 0.068 0.932 44 H 0.068 0.932 45 H 0.041 0.959 46 H 0.084 0.916 47 H 0.030 0.970 48 H 0.077 0.923 49 H -0.032 1.032 50 H 0.007 0.993 51 H 0.265 0.735 52 H 0.036 0.964 53 H 0.081 0.919 54 H 0.092 0.908 55 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.656 14.208 18.356 31.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.125 4.125 3 C -0.195 4.195 4 C -0.009 4.009 5 N -0.143 5.143 6 C -0.043 4.043 7 C -0.112 4.112 8 H 0.168 0.832 9 C -0.180 4.180 10 C -0.145 4.145 11 H 0.106 0.894 12 C -0.175 4.175 13 N -0.167 5.167 14 N -0.189 5.189 15 C -0.013 4.013 16 N -0.183 5.183 17 C -0.040 4.040 18 C -0.051 4.051 19 N -0.274 5.274 20 C 0.086 3.914 21 C -0.563 4.563 22 H 0.079 0.921 23 C -0.194 4.194 24 N -0.572 5.572 25 Si 0.791 3.209 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.197 1.197 29 C -0.066 4.066 30 C -0.043 4.043 31 H 0.082 0.918 32 H 0.052 0.948 33 H 0.101 0.899 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.098 0.902 38 H 0.141 0.859 39 H 0.115 0.885 40 H 0.149 0.851 41 H 0.105 0.895 42 H 0.094 0.906 43 H 0.087 0.913 44 H 0.087 0.913 45 H 0.059 0.941 46 H 0.103 0.897 47 H 0.049 0.951 48 H 0.095 0.905 49 H -0.014 1.014 50 H 0.025 0.975 51 H 0.074 0.926 52 H 0.055 0.945 53 H 0.100 0.900 54 H 0.110 0.890 55 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -21.827 12.809 18.214 31.181 hybrid contribution 1.198 0.481 -1.302 1.834 sum -20.629 13.290 16.912 29.803 Atomic orbital electron populations 1.21910 0.93934 1.00958 1.03518 1.21413 0.97056 0.97619 0.96450 1.21713 1.01233 0.93177 1.03411 1.22305 1.02692 0.74745 1.01202 1.46412 1.18914 1.10435 1.38504 1.24331 0.90414 0.90152 0.99427 1.20561 0.94783 0.99400 0.96418 0.83220 1.23258 0.93090 1.00933 1.00691 1.22537 1.01895 1.01279 0.88769 0.89394 1.21417 1.02329 0.96807 0.96996 1.73892 1.14884 1.13337 1.14600 1.74581 1.03978 1.23778 1.16613 1.22325 0.94782 0.84830 0.99393 1.58995 1.00835 1.56229 1.02198 1.22083 0.97643 0.99559 0.84760 1.21907 0.89923 0.95059 0.98214 1.62187 1.08309 1.54962 1.01912 1.19331 0.86288 0.93255 0.92535 1.21408 0.98691 1.37149 0.99061 0.92101 1.25862 0.94745 0.95982 1.02818 1.70062 1.03643 1.46094 1.37422 0.85480 0.77530 0.79056 0.78819 1.19179 1.20761 1.19653 1.22104 0.96265 0.99123 0.89150 1.22108 0.88857 0.95541 0.97792 0.91826 0.94825 0.89888 0.92934 0.92594 0.91767 0.90244 0.85858 0.88480 0.85075 0.89498 0.90625 0.91264 0.91289 0.94089 0.89745 0.95138 0.90490 1.01440 0.97476 0.92644 0.94537 0.90029 0.88965 0.93950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 8.08 71.98 0.58 -1.29 16 2 C -0.11 -1.58 3.12 -10.79 -0.03 -1.61 16 3 C -0.14 -1.50 9.19 71.98 0.66 -0.84 16 4 C 0.11 1.74 5.47 86.38 0.47 2.21 16 5 N -0.45 -10.56 2.52 -514.86 -1.30 -11.86 16 6 C 0.22 5.36 6.45 137.64 0.89 6.25 16 7 C -0.09 -1.32 5.02 -11.54 -0.06 -1.38 16 8 H 0.15 1.34 6.35 -2.39 -0.02 1.32 16 9 C -0.14 -1.88 9.80 30.62 0.30 -1.58 16 10 C -0.12 -1.58 6.11 -10.77 -0.07 -1.65 16 11 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 12 C -0.12 -0.78 10.19 71.98 0.73 -0.05 16 13 N -0.33 -10.56 11.79 -49.54 -0.58 -11.14 16 14 N -0.35 -12.44 12.19 -58.00 -0.71 -13.15 16 15 C 0.34 10.57 6.45 260.11 1.68 12.25 16 16 N -0.46 -14.25 4.73 -705.55 -3.33 -17.58 16 17 C 0.09 2.97 5.53 86.31 0.48 3.45 16 18 C 0.08 3.07 5.43 86.31 0.47 3.53 16 19 N -0.55 -24.22 4.70 -900.29 -4.23 -28.45 16 20 C 0.21 11.31 4.72 85.56 0.40 11.71 16 21 C -0.52 -29.87 8.47 25.60 0.22 -29.66 16 22 H 0.06 3.42 7.13 -2.91 -0.02 3.40 16 23 C 0.00 0.24 5.46 84.66 0.46 0.71 16 24 N -0.93 -55.94 13.29 21.45 0.28 -55.66 16 25 Si 0.97 44.60 29.54 68.60 2.03 46.63 16 26 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 27 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 28 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 29 C 0.06 2.26 5.61 86.31 0.48 2.75 16 30 C 0.08 2.71 5.53 86.31 0.48 3.19 16 31 H 0.06 0.79 8.14 -2.39 -0.02 0.78 16 32 H 0.03 0.59 6.51 -2.39 -0.02 0.57 16 33 H 0.08 0.62 7.34 -2.39 -0.02 0.60 16 34 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 37 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 38 H 0.12 1.14 7.65 -2.39 -0.02 1.13 16 39 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.13 0.99 8.05 -2.39 -0.02 0.97 16 41 H 0.09 1.60 7.92 -2.39 -0.02 1.58 16 42 H 0.07 0.29 7.90 -2.39 -0.02 0.27 16 43 H 0.07 0.43 8.14 -2.39 -0.02 0.42 16 44 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 45 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 46 H 0.08 2.62 8.13 -2.39 -0.02 2.60 16 47 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 48 H 0.08 3.28 6.79 -2.39 -0.02 3.26 16 49 H -0.03 -1.84 8.12 -2.39 -0.02 -1.86 16 50 H 0.01 0.41 8.03 -2.39 -0.02 0.39 16 51 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 52 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 53 H 0.08 2.91 8.07 -2.39 -0.02 2.89 16 54 H 0.09 2.56 8.13 -2.39 -0.02 2.54 16 55 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -71.98 430.96 1.15 -70.84 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: 0.84 Total: 12.38 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: 8.15 Total: 8.00 kcal Atomic # 7 Polarization: -127.97 SS G_CDS: -9.87 Total: -137.84 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -71.98 1.15 -70.84 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772329962.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.857 kcal (2) G-P(sol) polarization free energy of solvation -71.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds