Wall clock time and date at job start Wed Apr 1 2020 04:51:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47008 * 2 1 4 4 C 1.53008 * 109.46869 * 120.00100 * 2 1 3 5 5 N 1.46497 * 109.46941 * 174.60089 * 4 2 1 6 6 C 1.36737 * 127.13589 * 95.84717 * 5 4 2 7 7 C 1.50706 * 126.34918 * 0.04217 * 6 5 4 8 8 H 1.09002 * 115.54593 * 334.66523 * 7 6 5 9 9 C 1.52998 * 117.49858 * 188.99347 * 7 6 5 10 10 C 1.53004 * 117.50086 * 120.33234 * 7 6 5 11 11 H 1.08998 * 117.49382 * 0.02562 * 10 7 6 12 12 C 1.52998 * 117.49623 * 214.97894 * 10 7 6 13 13 N 1.30300 * 107.30638 * 180.22513 * 6 5 4 14 14 N 1.28525 * 110.04985 * 359.77748 * 13 6 5 15 15 C 1.31220 * 109.86159 * 359.97438 * 14 13 6 16 16 N 1.38579 * 126.47094 * 179.97438 * 15 14 13 17 17 C 1.46955 * 111.00115 * 342.63419 * 16 15 14 18 18 C 1.53053 * 109.36426 * 183.19229 * 17 16 15 19 19 N 1.46953 * 109.36508 * 301.59646 * 18 17 16 20 20 C 1.46895 * 111.00276 * 183.18926 * 19 18 17 21 21 C 1.50699 * 109.47261 * 169.99942 * 20 19 18 22 22 H 1.08002 * 119.99777 * 0.02562 * 21 20 19 23 23 C 1.37879 * 120.00088 * 180.02562 * 21 20 19 24 24 N 1.31513 * 119.99963 * 180.02562 * 23 21 20 25 25 Si 1.86797 * 119.99880 * 359.97438 * 23 21 20 26 26 H 1.48496 * 109.47206 * 90.00500 * 25 23 21 27 27 H 1.48500 * 109.46921 * 210.00295 * 25 23 21 28 28 H 1.48502 * 109.47396 * 330.00442 * 25 23 21 29 29 C 1.46955 * 110.87833 * 59.32177 * 19 18 17 30 30 C 1.46953 * 111.00300 * 106.43403 * 16 15 14 31 31 H 1.08999 * 109.47399 * 299.99809 * 1 2 3 32 32 H 1.08994 * 109.47199 * 60.00519 * 1 2 3 33 33 H 1.09004 * 109.47203 * 180.02562 * 1 2 3 34 34 H 1.09001 * 109.47206 * 239.99255 * 2 1 3 35 35 H 1.09009 * 109.46911 * 184.33540 * 3 2 1 36 36 H 1.08997 * 109.46902 * 304.33140 * 3 2 1 37 37 H 1.08993 * 109.47166 * 64.33900 * 3 2 1 38 38 H 1.08996 * 109.47135 * 54.59831 * 4 2 1 39 39 H 1.09000 * 109.46795 * 294.60010 * 4 2 1 40 40 H 1.09004 * 117.49862 * 359.97438 * 9 7 6 41 41 H 1.09004 * 117.49830 * 145.01570 * 9 7 6 42 42 H 1.09000 * 109.47310 * 60.00192 * 12 10 7 43 43 H 1.08997 * 109.46590 * 180.02562 * 12 10 7 44 44 H 1.09001 * 109.46998 * 300.00166 * 12 10 7 45 45 H 1.08996 * 109.49353 * 63.22069 * 17 16 15 46 46 H 1.09009 * 109.50693 * 303.16560 * 17 16 15 47 47 H 1.09001 * 109.48694 * 181.63054 * 18 17 16 48 48 H 1.09001 * 109.48850 * 61.56562 * 18 17 16 49 49 H 1.08996 * 109.47141 * 290.00225 * 20 19 18 50 50 H 1.09001 * 109.47079 * 50.00265 * 20 19 18 51 51 H 0.96998 * 120.00156 * 180.02562 * 24 23 21 52 52 H 1.08996 * 109.49353 * 60.65032 * 29 19 18 53 53 H 1.09004 * 109.49054 * 180.71512 * 29 19 18 54 54 H 1.09001 * 109.49044 * 296.77624 * 30 16 15 55 55 H 1.09001 * 109.48733 * 56.82330 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.4992 -0.8349 1.1861 6 6 4.4178 0.0006 1.7587 7 6 4.1188 1.2255 2.5842 8 1 3.1573 1.7006 2.3891 9 6 5.2939 2.1336 2.9520 10 6 4.6420 1.2538 4.0217 11 1 5.2028 0.3866 4.3702 12 6 3.7759 1.9473 5.0751 13 7 5.5996 -0.4564 1.4552 14 7 5.4909 -1.5182 0.7392 15 6 4.2235 -1.7982 0.5464 16 7 3.7165 -2.8666 -0.1759 17 6 4.7435 -3.4425 -1.0552 18 6 4.1243 -4.5649 -1.8915 19 7 3.5670 -5.5887 -0.9965 20 6 3.0295 -6.7212 -1.7623 21 6 2.6940 -7.8497 -0.8215 22 1 2.8627 -7.7366 0.2393 23 6 2.1716 -9.0264 -1.3149 24 7 1.8783 -10.0109 -0.4938 25 14 1.8791 -9.2216 -3.1494 26 1 3.0961 -9.7844 -3.7876 27 1 0.7334 -10.1395 -3.3731 28 1 1.5752 -7.8961 -3.7461 29 6 2.5400 -5.0128 -0.1172 30 6 3.1593 -3.8904 0.7190 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 1.8934 -0.5140 -0.8899 35 1 3.1273 1.4434 -0.0777 36 1 1.6146 1.9781 -0.8486 37 1 1.7415 1.9333 0.9262 38 1 1.5998 -1.7172 1.2990 39 1 1.7577 -0.1547 2.1366 40 1 6.2833 1.8448 2.5974 41 1 5.1055 3.2062 2.9993 42 1 2.8062 1.4527 5.1313 43 1 4.2695 1.8913 6.0453 44 1 3.6353 2.9924 4.7991 45 1 5.5559 -3.8454 -0.4504 46 1 5.1322 -2.6682 -1.7168 47 1 4.8910 -5.0129 -2.5236 48 1 3.3299 -4.1569 -2.5165 49 1 2.1287 -6.4081 -2.2900 50 1 3.7743 -7.0586 -2.4831 51 1 1.5111 -10.8389 -0.8409 52 1 1.7277 -4.6099 -0.7220 53 1 2.1517 -5.7872 0.5443 54 1 3.9536 -4.2984 1.3440 55 1 2.3927 -3.4423 1.3513 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001772329963.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:14 Heat of formation + Delta-G solvation = 96.161361 kcal Electronic energy + Delta-G solvation = -32080.951134 eV Core-core repulsion = 28154.400069 eV Total energy + Delta-G solvation = -3926.551065 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.238 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -44.13435 -40.40086 -38.74993 -38.01466 -36.83238 -34.60999 -34.27870 -32.11224 -31.64350 -30.17055 -28.83385 -28.21822 -27.84560 -26.73856 -25.22973 -24.41996 -23.34399 -22.56748 -21.86057 -21.47342 -20.93519 -20.53333 -18.94991 -18.56984 -17.65050 -17.35196 -16.77340 -16.61757 -16.12998 -15.98481 -15.82485 -15.62791 -15.43291 -15.07020 -14.91684 -14.77273 -14.35650 -14.21606 -13.98000 -13.69944 -13.60158 -13.32025 -13.29682 -13.05898 -12.88478 -12.79705 -12.74923 -12.54193 -12.50118 -12.33864 -12.30534 -12.24112 -12.01754 -11.89464 -11.83051 -11.70102 -11.62242 -11.60634 -11.41512 -11.09179 -10.95803 -10.77842 -10.43476 -9.40161 -9.09797 -8.28002 -6.31695 0.62867 1.14320 1.36773 1.37045 1.47736 1.66415 2.34788 2.55082 2.85581 3.03237 3.10479 3.20422 3.48026 3.61457 3.69806 3.76102 3.86017 3.91461 3.93517 3.96134 4.04954 4.19117 4.19456 4.25369 4.27987 4.37311 4.41499 4.46759 4.58559 4.61643 4.70289 4.74930 4.76460 4.80338 4.85552 4.88171 4.90858 4.93125 4.96594 4.98528 5.00245 5.01452 5.09684 5.16703 5.19690 5.22750 5.33673 5.36220 5.44731 5.47213 5.51742 5.56426 5.93469 6.14502 6.27973 6.59675 6.74223 7.32012 7.68182 8.88372 Molecular weight = 347.24amu Principal moments of inertia in cm(-1) A = 0.016374 B = 0.002507 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.630346 B =11164.160791 C =11605.095074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.104 4.104 3 C -0.144 4.144 4 C 0.107 3.893 5 N -0.461 5.461 6 C 0.220 3.780 7 C -0.089 4.089 8 H 0.150 0.850 9 C -0.140 4.140 10 C -0.128 4.128 11 H 0.086 0.914 12 C -0.118 4.118 13 N -0.325 5.325 14 N -0.355 5.355 15 C 0.353 3.647 16 N -0.449 5.449 17 C 0.088 3.912 18 C 0.058 3.942 19 N -0.548 5.548 20 C 0.174 3.826 21 C -0.516 4.516 22 H 0.038 0.962 23 C 0.009 3.991 24 N -0.947 5.947 25 Si 0.947 3.053 26 H -0.267 1.267 27 H -0.283 1.283 28 H -0.249 1.249 29 C 0.076 3.924 30 C 0.076 3.924 31 H 0.077 0.923 32 H 0.065 0.935 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.032 0.968 36 H 0.065 0.935 37 H 0.079 0.921 38 H 0.095 0.905 39 H 0.123 0.877 40 H 0.087 0.913 41 H 0.132 0.868 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.076 0.924 45 H 0.045 0.955 46 H 0.091 0.909 47 H 0.091 0.909 48 H 0.043 0.957 49 H -0.007 1.007 50 H 0.031 0.969 51 H 0.267 0.733 52 H 0.041 0.959 53 H 0.073 0.927 54 H 0.034 0.966 55 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.459 30.583 5.318 31.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.123 4.123 3 C -0.201 4.201 4 C -0.014 4.014 5 N -0.154 5.154 6 C -0.048 4.048 7 C -0.110 4.110 8 H 0.167 0.833 9 C -0.178 4.178 10 C -0.148 4.148 11 H 0.104 0.896 12 C -0.175 4.175 13 N -0.164 5.164 14 N -0.199 5.199 15 C -0.004 4.004 16 N -0.174 5.174 17 C -0.039 4.039 18 C -0.070 4.070 19 N -0.273 5.273 20 C 0.047 3.953 21 C -0.554 4.554 22 H 0.057 0.943 23 C -0.188 4.188 24 N -0.588 5.588 25 Si 0.770 3.230 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.173 1.173 29 C -0.052 4.052 30 C -0.051 4.051 31 H 0.095 0.905 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.051 0.949 36 H 0.084 0.916 37 H 0.098 0.902 38 H 0.113 0.887 39 H 0.141 0.859 40 H 0.105 0.895 41 H 0.150 0.850 42 H 0.086 0.914 43 H 0.086 0.914 44 H 0.095 0.905 45 H 0.063 0.937 46 H 0.109 0.891 47 H 0.109 0.891 48 H 0.061 0.939 49 H 0.011 0.989 50 H 0.049 0.951 51 H 0.076 0.924 52 H 0.060 0.940 53 H 0.091 0.909 54 H 0.053 0.947 55 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -2.052 30.255 5.225 30.771 hybrid contribution -1.218 -1.166 -0.834 1.881 sum -3.270 29.089 4.391 29.600 Atomic orbital electron populations 1.21728 0.91927 1.02584 1.03419 1.21393 0.97793 0.96750 0.96383 1.21883 0.99754 0.95030 1.03438 1.22395 0.73553 1.03946 1.01552 1.46240 1.09481 1.19590 1.40103 1.24252 0.84554 0.96239 0.99759 1.20537 1.01956 0.92259 0.96198 0.83279 1.23255 0.95923 0.98070 1.00549 1.22533 1.01771 1.01577 0.88943 0.89618 1.21411 0.98713 1.00484 0.96923 1.73833 1.21549 1.07008 1.13970 1.74562 1.15021 1.12287 1.18079 1.22554 0.87235 0.93486 0.97171 1.58994 1.33582 1.06582 1.18213 1.21986 0.91345 0.96088 0.94499 1.22218 0.99412 0.91151 0.94221 1.62000 1.35012 1.08270 1.22065 1.19912 0.93357 0.88944 0.93062 1.21226 1.41118 0.98495 0.94584 0.94332 1.25823 0.94847 0.95220 1.02930 1.70045 1.45660 1.05892 1.37210 0.85724 0.78344 0.79120 0.79801 1.19233 1.20835 1.17266 1.21904 0.92682 0.94654 0.95969 1.22253 0.98853 0.90317 0.93697 0.90450 0.91583 0.92545 0.92533 0.94930 0.91576 0.90220 0.88716 0.85930 0.89462 0.85035 0.91409 0.91372 0.90520 0.93674 0.89058 0.89085 0.93879 0.98884 0.95120 0.92435 0.94045 0.90914 0.94721 0.88454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 9.19 71.98 0.66 -0.77 16 2 C -0.10 -1.48 3.12 -10.79 -0.03 -1.52 16 3 C -0.14 -1.77 8.09 71.98 0.58 -1.19 16 4 C 0.11 1.66 5.44 86.38 0.47 2.13 16 5 N -0.46 -10.76 2.53 -514.84 -1.30 -12.06 16 6 C 0.22 5.30 6.54 137.64 0.90 6.20 16 7 C -0.09 -1.33 5.16 -11.54 -0.06 -1.39 16 8 H 0.15 1.38 6.23 -2.39 -0.01 1.37 16 9 C -0.14 -1.89 9.79 30.62 0.30 -1.59 16 10 C -0.13 -1.74 6.11 -10.77 -0.07 -1.80 16 11 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 12 C -0.12 -0.90 10.19 71.98 0.73 -0.16 16 13 N -0.32 -10.46 11.79 -49.53 -0.58 -11.04 16 14 N -0.36 -12.56 11.40 -58.01 -0.66 -13.22 16 15 C 0.35 10.71 6.93 260.11 1.80 12.51 16 16 N -0.45 -13.50 4.73 -705.54 -3.33 -16.83 16 17 C 0.09 2.79 5.05 86.31 0.44 3.22 16 18 C 0.06 1.94 5.61 86.31 0.48 2.42 16 19 N -0.55 -22.51 4.70 -900.30 -4.23 -26.74 16 20 C 0.17 8.17 3.79 85.56 0.32 8.50 16 21 C -0.52 -29.36 9.03 25.60 0.23 -29.13 16 22 H 0.04 2.45 7.37 -2.91 -0.02 2.43 16 23 C 0.01 0.53 5.47 84.66 0.46 0.99 16 24 N -0.95 -58.71 13.96 21.45 0.30 -58.41 16 25 Si 0.95 43.38 27.47 68.60 1.88 45.26 16 26 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 27 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 28 H -0.25 -10.57 6.54 99.48 0.65 -9.92 16 29 C 0.08 2.82 5.43 86.31 0.47 3.29 16 30 C 0.08 2.37 5.50 86.31 0.47 2.85 16 31 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.03 0.56 6.94 -2.38 -0.02 0.54 16 36 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.08 0.60 7.09 -2.39 -0.02 0.58 16 38 H 0.09 1.54 6.24 -2.39 -0.01 1.53 16 39 H 0.12 1.19 7.63 -2.39 -0.02 1.17 16 40 H 0.09 1.62 7.92 -2.38 -0.02 1.60 16 41 H 0.13 1.00 8.05 -2.38 -0.02 0.99 16 42 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 43 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 44 H 0.08 0.35 7.90 -2.39 -0.02 0.33 16 45 H 0.04 1.61 8.04 -2.39 -0.02 1.59 16 46 H 0.09 2.69 8.13 -2.38 -0.02 2.67 16 47 H 0.09 2.85 8.07 -2.39 -0.02 2.83 16 48 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 49 H -0.01 -0.30 7.18 -2.39 -0.02 -0.32 16 50 H 0.03 1.42 7.45 -2.39 -0.02 1.40 16 51 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 52 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 53 H 0.07 3.07 6.79 -2.39 -0.02 3.05 16 54 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 55 H 0.10 2.51 6.25 -2.39 -0.01 2.49 16 Total: -1.00 -73.60 422.94 1.04 -72.56 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: 0.80 Total: 15.93 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: 8.17 Total: 4.55 kcal Atomic # 7 Polarization: -128.49 SS G_CDS: -9.81 Total: -138.30 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 1.88 Total: 45.26 kcal Total: -73.60 1.04 -72.56 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772329963.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.718 kcal (2) G-P(sol) polarization free energy of solvation -73.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds