Wall clock time and date at job start Wed Apr 1 2020 05:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30879 * 1 3 3 Si 1.86799 * 119.99997 * 2 1 4 4 H 1.48505 * 109.47213 * 270.00218 * 3 2 1 5 5 H 1.48500 * 109.46897 * 29.99655 * 3 2 1 6 6 H 1.48495 * 109.47336 * 150.00212 * 3 2 1 7 7 C 1.39895 * 120.00135 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99923 * 197.78429 * 7 2 1 9 9 C 1.41208 * 120.00008 * 17.77697 * 7 2 1 10 10 C 1.40837 * 120.18128 * 24.71720 * 9 7 2 11 11 C 1.36435 * 119.81299 * 180.22570 * 10 9 7 12 12 C 1.39311 * 120.18622 * 359.50279 * 11 10 9 13 13 O 1.35678 * 119.81979 * 180.27881 * 12 11 10 14 14 S 1.52200 * 114.00309 * 89.99350 * 13 12 11 15 15 O 1.42094 * 106.40022 * 188.53870 * 14 13 12 16 16 O 1.42100 * 106.40263 * 321.46376 * 14 13 12 17 17 C 1.76203 * 107.21353 * 75.00211 * 14 13 12 18 18 C 1.38392 * 119.92033 * 269.72376 * 17 14 13 19 19 C 1.38353 * 120.29856 * 179.72728 * 18 17 14 20 20 C 1.37970 * 120.14987 * 0.55396 * 19 18 17 21 21 C 1.39604 * 119.84519 * 359.72223 * 20 19 18 22 22 C 1.47732 * 120.15087 * 180.02562 * 21 20 19 23 23 O 1.21475 * 120.00268 * 179.97438 * 22 21 20 24 24 O 1.34714 * 119.99588 * 359.97438 * 22 21 20 25 25 C 1.37915 * 119.92665 * 90.00156 * 17 14 13 26 26 C 1.39316 * 120.36229 * 0.24797 * 12 11 10 27 27 C 1.36432 * 120.18796 * 0.02562 * 26 12 11 28 28 H 0.97001 * 120.00430 * 0.02562 * 1 2 3 29 29 H 1.08001 * 120.09526 * 0.02562 * 10 9 7 30 30 H 1.08006 * 119.90500 * 179.77382 * 11 10 9 31 31 H 1.07991 * 119.85480 * 0.02562 * 18 17 14 32 32 H 1.07995 * 119.92652 * 180.25412 * 19 18 17 33 33 H 1.07999 * 120.07592 * 179.70794 * 20 19 18 34 34 H 0.96702 * 116.99584 * 179.97438 * 24 22 21 35 35 H 1.08003 * 120.07685 * 359.97316 * 25 17 14 36 36 H 1.07997 * 119.90432 * 180.02562 * 26 12 11 37 37 H 1.07996 * 120.09717 * 180.02562 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.4903 2.0465 -1.4001 5 1 1.4402 2.6526 0.7000 6 1 3.5403 1.4402 0.7000 7 6 2.0083 -1.2115 -0.0005 8 1 3.0496 -1.2339 0.2851 9 6 1.3529 -2.4051 -0.3744 10 6 0.2239 -2.3594 -1.2152 11 6 -0.4064 -3.5168 -1.5680 12 6 0.0700 -4.7423 -1.1075 13 8 -0.5592 -5.8892 -1.4675 14 16 -0.0244 -6.5127 -2.7488 15 8 -0.9122 -7.5714 -3.0808 16 8 0.2642 -5.4354 -3.6293 17 6 1.5210 -7.2635 -2.3579 18 6 2.6915 -6.5342 -2.4734 19 6 3.9087 -7.1142 -2.1631 20 6 3.9641 -8.4284 -1.7469 21 6 2.7876 -9.1715 -1.6336 22 6 2.8390 -10.5791 -1.1881 23 8 1.8137 -11.2230 -1.0900 24 8 4.0231 -11.1485 -0.8905 25 6 1.5619 -8.5781 -1.9429 26 6 1.1892 -4.7967 -0.2797 27 6 1.8277 -3.6481 0.0870 28 1 -0.4851 0.8400 -0.0004 29 1 -0.1438 -1.4106 -1.5771 30 1 -1.2745 -3.4833 -2.2098 31 1 2.6543 -5.5064 -2.8026 32 1 4.8180 -6.5383 -2.2515 33 1 4.9153 -8.8814 -1.5095 34 1 4.0063 -12.0716 -0.6030 35 1 0.6480 -9.1473 -1.8571 36 1 1.5524 -5.7507 0.0728 37 1 2.6955 -3.6920 0.7284 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000013073457.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:55 Heat of formation + Delta-G solvation = -170.836312 kcal Electronic energy + Delta-G solvation = -27682.798491 eV Core-core repulsion = 23481.785866 eV Total energy + Delta-G solvation = -4201.012624 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.059 amu Computer time = 12.83 seconds Orbital eigenvalues (eV) -41.57287 -41.51024 -39.80536 -38.73953 -38.34479 -37.18214 -37.05416 -35.49859 -32.87936 -32.40884 -31.71101 -31.26770 -27.25206 -25.99708 -24.61212 -23.65415 -23.17280 -22.51876 -21.26927 -20.03912 -19.43691 -18.95427 -18.90415 -18.39473 -17.62141 -17.20523 -17.16106 -16.78142 -16.51282 -16.20383 -15.85121 -15.62892 -15.13739 -14.70819 -14.52809 -14.27410 -14.17538 -13.94411 -13.85791 -13.79617 -13.46954 -13.25928 -13.17834 -13.13750 -12.85987 -12.81631 -12.68036 -12.59219 -12.35977 -11.97480 -11.77035 -11.73631 -11.35353 -11.09999 -10.68147 -10.32128 -9.67937 -9.44847 -8.81184 -6.47969 -0.76842 -0.59242 -0.25307 0.68784 1.02800 1.27801 1.43772 1.51117 1.58117 1.64404 1.88747 2.17548 2.37745 2.55512 2.63418 3.22658 3.53844 3.62890 3.75440 3.86020 4.01160 4.14402 4.22223 4.27078 4.47721 4.50545 4.65582 4.86830 4.94462 4.97400 4.98731 5.08601 5.10069 5.18845 5.46414 5.49200 5.56619 5.74564 5.88286 5.94303 6.11351 6.49380 6.72840 6.81379 6.86644 8.14053 Molecular weight = 348.06amu Principal moments of inertia in cm(-1) A = 0.016601 B = 0.003151 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.213344 B = 8884.615607 C = 9916.506948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.033 3.967 3 Si 0.989 3.011 4 H -0.262 1.262 5 H -0.271 1.271 6 H -0.249 1.249 7 C -0.452 4.452 8 H 0.102 0.898 9 C 0.097 3.903 10 C -0.180 4.180 11 C -0.074 4.074 12 C -0.115 4.115 13 O -0.642 6.642 14 S 2.656 3.344 15 O -0.983 6.983 16 O -0.978 6.978 17 C -0.704 4.704 18 C 0.016 3.984 19 C -0.139 4.139 20 C 0.009 3.991 21 C -0.164 4.164 22 C 0.539 3.461 23 O -0.548 6.548 24 O -0.494 6.494 25 C 0.027 3.973 26 C -0.066 4.066 27 C -0.215 4.215 28 H 0.297 0.703 29 H 0.115 0.885 30 H 0.104 0.896 31 H 0.147 0.853 32 H 0.182 0.818 33 H 0.185 0.815 34 H 0.437 0.563 35 H 0.139 0.861 36 H 0.129 0.871 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.452 -9.968 -0.514 15.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.186 4.186 3 Si 0.809 3.191 4 H -0.187 1.187 5 H -0.196 1.196 6 H -0.172 1.172 7 C -0.479 4.479 8 H 0.119 0.881 9 C 0.093 3.907 10 C -0.200 4.200 11 C -0.095 4.095 12 C -0.160 4.160 13 O -0.602 6.602 14 S 2.756 3.244 15 O -0.981 6.981 16 O -0.977 6.977 17 C -0.790 4.790 18 C -0.003 4.003 19 C -0.157 4.157 20 C -0.008 4.008 21 C -0.166 4.166 22 C 0.384 3.616 23 O -0.440 6.440 24 O -0.308 6.308 25 C 0.008 3.992 26 C -0.086 4.086 27 C -0.235 4.235 28 H 0.108 0.892 29 H 0.133 0.867 30 H 0.122 0.878 31 H 0.164 0.836 32 H 0.199 0.801 33 H 0.202 0.798 34 H 0.300 0.700 35 H 0.157 0.843 36 H 0.147 0.853 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 11.244 -9.607 -0.903 14.817 hybrid contribution -0.179 -0.418 0.180 0.489 sum 11.066 -10.025 -0.724 14.949 Atomic orbital electron populations 1.69872 1.09440 1.31813 1.31106 1.26998 0.95478 1.05285 0.90878 0.85070 0.79300 0.75045 0.79696 1.18699 1.19574 1.17178 1.20191 0.99191 0.91628 1.36933 0.88051 1.18146 0.90863 0.93731 0.87916 1.20925 1.00313 0.96352 1.02415 1.20631 0.98690 0.91937 0.98214 1.17707 1.02460 0.80001 1.15827 1.85625 1.67823 1.45384 1.61346 1.03429 0.73745 0.73146 0.74119 1.93505 1.64127 1.57801 1.82680 1.93542 1.85406 1.53114 1.65599 1.30834 1.21785 1.05842 1.20547 1.21542 0.91522 0.99535 0.87711 1.21769 0.98642 0.95516 0.99778 1.22177 0.98224 0.92982 0.87454 1.19219 0.95228 0.92115 1.10071 1.20635 0.81128 0.87084 0.72765 1.90920 1.36756 1.64903 1.51411 1.84471 1.32042 1.35595 1.78726 1.20969 0.98798 0.91863 0.87588 1.20583 0.93098 0.99356 0.95600 1.20824 1.04552 0.91198 1.06896 0.89171 0.86678 0.87779 0.83562 0.80069 0.79798 0.70009 0.84349 0.85319 0.85070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -36.87 10.96 21.82 0.24 -36.63 16 2 C 0.03 1.42 5.14 85.24 0.44 1.86 16 3 Si 0.99 32.28 29.59 68.60 2.03 34.31 16 4 H -0.26 -8.48 7.11 99.48 0.71 -7.78 16 5 H -0.27 -8.62 7.11 99.48 0.71 -7.91 16 6 H -0.25 -7.66 7.11 99.48 0.71 -6.96 16 7 C -0.45 -20.37 9.04 23.40 0.21 -20.16 16 8 H 0.10 4.16 7.91 -2.91 -0.02 4.14 16 9 C 0.10 4.57 5.57 -21.28 -0.12 4.45 16 10 C -0.18 -8.80 8.64 22.48 0.19 -8.61 16 11 C -0.07 -3.50 9.12 22.11 0.20 -3.29 16 12 C -0.12 -5.06 4.82 22.79 0.11 -4.95 16 13 O -0.64 -26.91 10.14 -59.24 -0.60 -27.51 16 14 S 2.66 103.61 5.42 -56.49 -0.31 103.30 16 15 O -0.98 -41.98 17.26 -118.78 -2.05 -44.03 16 16 O -0.98 -41.73 15.58 -118.78 -1.85 -43.58 16 17 C -0.70 -22.16 5.24 22.23 0.12 -22.04 16 18 C 0.02 0.42 8.44 22.33 0.19 0.61 16 19 C -0.14 -2.51 10.03 22.23 0.22 -2.29 16 20 C 0.01 0.16 9.62 22.54 0.22 0.37 16 21 C -0.16 -3.84 5.87 -20.10 -0.12 -3.95 16 22 C 0.54 11.82 8.27 70.33 0.58 12.40 16 23 O -0.55 -16.14 17.13 19.92 0.34 -15.80 16 24 O -0.49 -6.10 12.68 -56.24 -0.71 -6.82 16 25 C 0.03 0.81 9.07 22.53 0.20 1.01 16 26 C -0.07 -2.60 8.31 22.11 0.18 -2.42 16 27 C -0.21 -8.80 9.74 22.48 0.22 -8.58 16 28 H 0.30 12.31 8.30 -92.71 -0.77 11.54 16 29 H 0.12 5.81 6.17 -2.91 -0.02 5.80 16 30 H 0.10 4.71 8.06 -2.91 -0.02 4.68 16 31 H 0.15 4.08 7.60 -2.92 -0.02 4.06 16 32 H 0.18 1.93 8.06 -2.91 -0.02 1.91 16 33 H 0.18 1.64 7.61 -2.91 -0.02 1.62 16 34 H 0.44 1.48 9.11 -74.06 -0.67 0.81 16 35 H 0.14 4.42 7.20 -2.91 -0.02 4.40 16 36 H 0.13 4.29 7.93 -2.91 -0.02 4.26 16 37 H 0.13 4.65 8.06 -2.91 -0.02 4.62 16 Total: -1.00 -67.56 343.02 0.42 -67.14 By element: Atomic # 1 Polarization: 24.72 SS G_CDS: 0.48 Total: 25.20 kcal Atomic # 6 Polarization: -58.44 SS G_CDS: 2.85 Total: -55.59 kcal Atomic # 7 Polarization: -36.87 SS G_CDS: 0.24 Total: -36.63 kcal Atomic # 8 Polarization: -132.87 SS G_CDS: -4.87 Total: -137.74 kcal Atomic # 14 Polarization: 32.28 SS G_CDS: 2.03 Total: 34.31 kcal Atomic # 16 Polarization: 103.61 SS G_CDS: -0.31 Total: 103.30 kcal Total: -67.56 0.42 -67.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000013073457.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.694 kcal (2) G-P(sol) polarization free energy of solvation -67.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 12.83 seconds