Wall clock time and date at job start Wed Apr 1 2020 05:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42098 * 110.54159 * 2 1 4 4 O 1.42102 * 110.54324 * 223.24646 * 2 1 3 5 5 C 1.76204 * 104.44880 * 111.62695 * 2 1 3 6 6 C 1.38257 * 119.94543 * 89.99823 * 5 2 1 7 7 C 1.38149 * 120.05674 * 179.97438 * 6 5 2 8 8 C 1.38733 * 119.94165 * 0.02562 * 7 6 5 9 9 O 1.35899 * 120.05591 * 180.02562 * 8 7 6 10 10 S 1.52206 * 113.99819 * 89.99924 * 9 8 7 11 11 O 1.42102 * 104.27284 * 191.07067 * 10 9 8 12 12 O 1.42097 * 104.27652 * 318.92610 * 10 9 8 13 13 C 1.81397 * 104.45132 * 75.00290 * 10 9 8 14 14 C 1.52998 * 109.47056 * 180.02562 * 13 10 9 15 15 C 1.52999 * 109.46987 * 179.97438 * 14 13 10 16 16 C 1.50697 * 109.46938 * 179.97438 * 15 14 13 17 17 H 1.08000 * 120.00180 * 0.02562 * 16 15 14 18 18 C 1.37882 * 120.00035 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99862 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 120.00200 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.46836 * 89.99924 * 20 18 16 22 22 H 1.48498 * 109.47153 * 209.99895 * 20 18 16 23 23 H 1.48499 * 109.46830 * 329.99842 * 20 18 16 24 24 C 1.38735 * 119.88774 * 0.26724 * 8 7 6 25 25 C 1.38140 * 119.94311 * 359.47969 * 24 8 7 26 26 H 1.08989 * 109.47096 * 308.37587 * 1 2 3 27 27 H 1.09000 * 109.46645 * 68.37702 * 1 2 3 28 28 H 1.08998 * 109.46868 * 188.37281 * 1 2 3 29 29 H 1.08001 * 119.97450 * 0.02816 * 6 5 2 30 30 H 1.07993 * 120.03185 * 179.97438 * 7 6 5 31 31 H 1.09006 * 109.46801 * 299.99915 * 13 10 9 32 32 H 1.09000 * 109.47473 * 59.99537 * 13 10 9 33 33 H 1.08993 * 109.46944 * 299.99631 * 14 13 10 34 34 H 1.09006 * 109.47302 * 59.99913 * 14 13 10 35 35 H 1.08993 * 109.47450 * 299.99900 * 15 14 13 36 36 H 1.09006 * 109.46698 * 60.00122 * 15 14 13 37 37 H 0.97004 * 119.99856 * 179.97438 * 19 18 16 38 38 H 1.08006 * 120.02806 * 179.72285 * 24 8 7 39 39 H 1.08005 * 119.96993 * 180.22342 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3306 0.0000 4 8 2.3127 -0.9693 -0.9117 5 6 2.2537 -0.6289 1.5862 6 6 2.4259 -1.9889 1.7659 7 6 2.7711 -2.4844 3.0084 8 6 2.9445 -1.6160 4.0764 9 8 3.2846 -2.1009 5.2996 10 16 4.7857 -2.1930 5.5335 11 8 4.9082 -2.9514 6.7289 12 8 5.3031 -2.6778 4.3020 13 6 5.3066 -0.4778 5.8117 14 6 6.8156 -0.4372 6.0612 15 6 7.2550 1.0095 6.2952 16 6 8.7411 1.0495 6.5416 17 1 9.3149 0.1346 6.5317 18 6 9.3684 2.2541 6.7795 19 7 8.6695 3.3681 6.7920 20 14 11.2107 2.3038 7.0842 21 1 11.9218 2.4722 5.7914 22 1 11.5339 3.4439 7.9791 23 1 11.6409 1.0347 7.7242 24 6 2.7652 -0.2524 3.8949 25 6 2.4251 0.2385 2.6492 26 1 -0.3633 0.6379 0.8056 27 1 -0.3632 0.3787 -0.9554 28 1 -0.3633 -1.0167 0.1496 29 1 2.2912 -2.6644 0.9341 30 1 2.9051 -3.5468 3.1485 31 1 5.0676 0.1215 4.9331 32 1 4.7835 -0.0754 6.6792 33 1 7.0548 -1.0366 6.9395 34 1 7.3383 -0.8394 5.1933 35 1 7.0157 1.6086 5.4167 36 1 6.7322 1.4121 7.1629 37 1 9.1108 4.2156 6.9598 38 1 2.8952 0.4252 4.7258 39 1 2.2889 1.3004 2.5065 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068872959.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:27:19 Heat of formation + Delta-G solvation = -150.786387 kcal Electronic energy + Delta-G solvation = -26018.002661 eV Core-core repulsion = 21953.303418 eV Total energy + Delta-G solvation = -4064.699243 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 348.063 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.43700 -38.54547 -37.50681 -37.21357 -36.32606 -36.12149 -34.80810 -32.31491 -31.70700 -31.16481 -29.96188 -27.97213 -24.46489 -24.03419 -23.41958 -21.23222 -20.40594 -19.55404 -18.66488 -18.19387 -17.66928 -17.58329 -16.62201 -16.51818 -16.07676 -15.64202 -15.49754 -15.14125 -14.52081 -14.49088 -14.12911 -14.03196 -13.81916 -13.72703 -13.48080 -13.32366 -12.74322 -12.61285 -12.46102 -12.39816 -12.35654 -12.22184 -12.09776 -11.93812 -11.61979 -11.57878 -11.35948 -11.21730 -10.95675 -10.92502 -10.47506 -10.03043 -9.78412 -9.63817 -9.44568 -9.18685 -8.43629 -6.08627 -4.11943 -0.48785 -0.20600 0.46821 0.69927 1.94579 2.38992 2.76410 3.29367 3.35539 3.39254 3.49086 3.57541 3.64726 3.87590 4.15126 4.19226 4.27375 4.39967 4.42765 4.54385 4.67898 4.86273 4.95817 4.99333 5.12657 5.17547 5.28038 5.33771 5.46757 5.59531 5.65653 5.72711 6.15579 6.22156 6.32522 6.78305 7.51634 7.60769 7.88716 8.28419 8.93904 9.53081 11.02573 Molecular weight = 348.06amu Principal moments of inertia in cm(-1) A = 0.011961 B = 0.002873 C = 0.002460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2340.442294 B = 9742.756879 C =11377.072392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.649 4.649 2 S 2.503 3.497 3 O -0.929 6.929 4 O -0.932 6.932 5 C -0.657 4.657 6 C -0.006 4.006 7 C -0.115 4.115 8 C 0.130 3.870 9 O -0.674 6.674 10 S 2.579 3.421 11 O -0.925 6.925 12 O -0.951 6.951 13 C -0.630 4.630 14 C -0.103 4.103 15 C 0.031 3.969 16 C -0.528 4.528 17 H 0.058 0.942 18 C 0.058 3.942 19 N -0.894 5.894 20 Si 0.895 3.105 21 H -0.279 1.279 22 H -0.286 1.286 23 H -0.273 1.273 24 C -0.152 4.152 25 C -0.003 4.003 26 H 0.133 0.867 27 H 0.133 0.867 28 H 0.133 0.867 29 H 0.157 0.843 30 H 0.150 0.850 31 H 0.131 0.869 32 H 0.137 0.863 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.022 0.978 36 H 0.021 0.979 37 H 0.262 0.738 38 H 0.155 0.845 39 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.456 -7.891 -12.155 26.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.799 4.799 2 S 2.681 3.319 3 O -0.926 6.926 4 O -0.929 6.929 5 C -0.743 4.743 6 C -0.025 4.025 7 C -0.136 4.136 8 C 0.088 3.912 9 O -0.632 6.632 10 S 2.678 3.322 11 O -0.924 6.924 12 O -0.950 6.950 13 C -0.760 4.760 14 C -0.143 4.143 15 C -0.007 4.007 16 C -0.566 4.566 17 H 0.077 0.923 18 C -0.143 4.143 19 N -0.533 5.533 20 Si 0.723 3.277 21 H -0.205 1.205 22 H -0.212 1.212 23 H -0.197 1.197 24 C -0.172 4.172 25 C -0.022 4.022 26 H 0.152 0.848 27 H 0.152 0.848 28 H 0.151 0.849 29 H 0.175 0.825 30 H 0.168 0.832 31 H 0.149 0.851 32 H 0.155 0.845 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.040 0.960 36 H 0.040 0.960 37 H 0.072 0.928 38 H 0.173 0.827 39 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -22.011 -8.270 -12.650 26.700 hybrid contribution 0.691 0.440 1.347 1.577 sum -21.321 -7.830 -11.302 25.370 Atomic orbital electron populations 1.30228 1.25414 1.12213 1.12093 1.05260 0.77936 0.74772 0.73950 1.93625 1.77196 1.36149 1.85665 1.93609 1.77276 1.61669 1.60365 1.30850 1.17746 1.02968 1.22737 1.20880 0.91327 0.93380 0.96890 1.21450 0.99242 1.01204 0.91684 1.18378 0.99951 0.92593 0.80244 1.85775 1.53545 1.84202 1.39668 1.05988 0.72446 0.78859 0.74914 1.93627 1.82550 1.67997 1.48178 1.93639 1.77633 1.79034 1.44660 1.30827 1.10666 1.22472 1.12031 1.21516 0.86191 1.04670 1.01879 1.19072 0.96362 0.87775 0.97541 1.21227 0.93055 0.93293 1.49019 0.92333 1.25017 0.98491 0.95640 0.95174 1.69952 1.35828 0.98052 1.49501 0.86542 0.85236 0.77729 0.78229 1.20516 1.21150 1.19748 1.21611 1.02339 0.93475 0.99802 1.20878 0.91087 1.00291 0.89965 0.84790 0.84814 0.84864 0.82535 0.83194 0.85060 0.84510 0.91280 0.91278 0.95997 0.96018 0.92841 0.82688 0.82289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -1.28 10.80 101.05 1.09 -0.19 16 2 S 2.50 16.54 5.80 -107.50 -0.62 15.92 16 3 O -0.93 -9.50 17.12 -57.54 -0.99 -10.48 16 4 O -0.93 -9.19 17.12 -57.54 -0.99 -10.18 16 5 C -0.66 -5.33 5.66 -39.56 -0.22 -5.56 16 6 C -0.01 -0.05 9.46 -39.61 -0.37 -0.43 16 7 C -0.12 -1.20 9.05 -39.43 -0.36 -1.56 16 8 C 0.13 1.53 4.79 -39.21 -0.19 1.34 16 9 O -0.67 -8.70 10.05 -51.75 -0.52 -9.22 16 10 S 2.58 39.02 5.17 -107.50 -0.56 38.47 16 11 O -0.93 -16.69 18.09 -67.04 -1.21 -17.90 16 12 O -0.95 -16.02 16.26 -67.04 -1.09 -17.11 16 13 C -0.63 -9.52 5.47 37.16 0.20 -9.32 16 14 C -0.10 -2.05 5.16 -26.73 -0.14 -2.19 16 15 C 0.03 0.77 4.97 -27.88 -0.14 0.63 16 16 C -0.53 -14.73 9.11 -34.44 -0.31 -15.04 16 17 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 18 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 19 N -0.89 -26.35 13.29 55.43 0.74 -25.62 16 20 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 24 C -0.15 -1.49 8.46 -39.43 -0.33 -1.82 16 25 C 0.00 -0.03 9.46 -39.61 -0.37 -0.40 16 26 H 0.13 0.08 8.14 -51.93 -0.42 -0.34 16 27 H 0.13 0.10 8.14 -51.92 -0.42 -0.32 16 28 H 0.13 0.06 8.14 -51.93 -0.42 -0.37 16 29 H 0.16 0.91 7.57 -52.49 -0.40 0.51 16 30 H 0.15 1.35 8.06 -52.49 -0.42 0.93 16 31 H 0.13 1.74 6.62 -51.92 -0.34 1.40 16 32 H 0.14 1.78 8.14 -51.92 -0.42 1.36 16 33 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 35 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 38 H 0.16 1.19 7.52 -52.48 -0.39 0.80 16 39 H 0.16 0.98 7.57 -52.48 -0.40 0.58 16 LS Contribution 360.14 15.07 5.43 5.43 Total: -1.00 -40.11 360.14 -10.95 -51.06 By element: Atomic # 1 Polarization: 0.99 SS G_CDS: -4.88 Total: -3.89 kcal Atomic # 6 Polarization: -31.73 SS G_CDS: -1.25 Total: -32.98 kcal Atomic # 7 Polarization: -26.35 SS G_CDS: 0.74 Total: -25.62 kcal Atomic # 8 Polarization: -60.09 SS G_CDS: -4.79 Total: -64.89 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: 55.56 SS G_CDS: -1.18 Total: 54.38 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -40.11 -10.95 -51.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068872959.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.724 kcal (2) G-P(sol) polarization free energy of solvation -40.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds