Wall clock time and date at job start Wed Apr 1 2020 05:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47440 * 2 1 4 4 C 1.50707 * 109.47070 * 120.00056 * 2 1 3 5 5 H 1.08003 * 119.99847 * 85.64284 * 4 2 1 6 6 C 1.37873 * 119.99732 * 265.64650 * 4 2 1 7 7 N 1.31517 * 119.99757 * 177.99937 * 6 4 2 8 8 Si 1.86803 * 120.00410 * 357.99566 * 6 4 2 9 9 H 1.48499 * 109.46952 * 274.87978 * 8 6 4 10 10 H 1.48502 * 109.46811 * 34.87387 * 8 6 4 11 11 H 1.48500 * 109.47096 * 154.87670 * 8 6 4 12 12 N 1.46501 * 109.47233 * 239.99630 * 2 1 3 13 13 S 1.65604 * 119.99570 * 94.99813 * 12 2 1 14 14 O 1.42100 * 106.39874 * 178.54282 * 13 12 2 15 15 O 1.42099 * 106.40444 * 311.46533 * 13 12 2 16 16 C 1.76204 * 107.21565 * 65.00402 * 13 12 2 17 17 C 1.38387 * 119.84479 * 89.99481 * 16 13 12 18 18 C 1.37924 * 120.15018 * 179.97438 * 17 16 13 19 19 C 1.39650 * 119.84383 * 0.03262 * 18 17 16 20 20 C 1.43201 * 120.14896 * 180.02562 * 19 18 17 21 21 N 7.77825 * 145.95290 * 348.22362 * 2 1 3 22 22 C 1.39612 * 119.70262 * 359.97438 * 19 18 17 23 23 C 1.50704 * 120.07748 * 180.02562 * 22 19 18 24 24 F 1.39905 * 109.47017 * 179.97438 * 23 22 19 25 25 F 1.39895 * 109.47025 * 299.99850 * 23 22 19 26 26 F 1.39901 * 109.47292 * 59.99797 * 23 22 19 27 27 C 1.37971 * 119.84509 * 359.72445 * 22 19 18 28 28 H 1.08999 * 109.47377 * 174.34283 * 1 2 3 29 29 H 1.09001 * 109.47142 * 294.34154 * 1 2 3 30 30 H 1.08997 * 109.47429 * 54.33835 * 1 2 3 31 31 H 0.97000 * 119.99747 * 180.02562 * 7 6 4 32 32 H 0.96998 * 120.00355 * 275.01013 * 12 2 1 33 33 H 1.08004 * 119.92452 * 359.97438 * 17 16 13 34 34 H 1.08003 * 120.07930 * 180.02562 * 18 17 16 35 35 H 1.07998 * 119.92743 * 180.30302 * 27 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.1453 -1.7845 1.2256 6 6 2.3476 0.0108 2.3625 7 7 2.7484 -0.6126 3.4489 8 14 2.2055 1.8734 2.3530 9 1 3.4541 2.4623 1.8060 10 1 1.0549 2.2777 1.5057 11 1 1.9944 2.3607 3.7398 12 7 2.0184 -0.6907 -1.1961 13 16 2.4122 0.1771 -2.5505 14 8 2.8776 -0.7636 -3.5084 15 8 1.3247 1.0593 -2.7921 16 6 3.7928 1.1909 -2.1371 17 6 5.0782 0.7118 -2.3195 18 6 6.1634 1.5002 -1.9985 19 6 5.9627 2.7843 -1.4878 20 6 7.0848 3.6087 -1.1529 21 7 7.9749 4.2632 -0.8888 22 6 4.6632 3.2613 -1.3063 23 6 4.4369 4.6460 -0.7563 24 9 3.0628 4.8935 -0.6672 25 9 5.0119 4.7424 0.5154 26 9 5.0257 5.5877 -1.6070 27 6 3.5867 2.4643 -1.6374 28 1 -0.3634 -1.0226 -0.1013 29 1 -0.3633 0.4236 0.9363 30 1 -0.3634 0.5991 -0.8349 31 1 2.9698 -0.1052 4.2454 32 1 2.1109 -1.6562 -1.1949 33 1 5.2319 -0.2818 -2.7141 34 1 7.1661 1.1252 -2.1417 35 1 2.5810 2.8338 -1.5020 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083537819.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:38 Heat of formation + Delta-G solvation = -163.525394 kcal Electronic energy + Delta-G solvation = -29396.456939 eV Core-core repulsion = 24686.197351 eV Total energy + Delta-G solvation = -4710.259588 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.054 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -50.39424 -47.89891 -47.84080 -40.04885 -37.09975 -36.87864 -35.77914 -35.65653 -32.73052 -32.39314 -32.07389 -29.22161 -26.69119 -25.40603 -24.81837 -22.76825 -20.97805 -19.94222 -19.64074 -18.72585 -18.68308 -18.43392 -17.68217 -16.75124 -16.40818 -16.28796 -15.63561 -15.07985 -14.92797 -14.59844 -14.58055 -14.36894 -14.27072 -14.22577 -13.97819 -13.96665 -13.72592 -13.30925 -13.09176 -13.00932 -12.95403 -12.84173 -12.65885 -12.09800 -11.98743 -11.91042 -11.82641 -11.71971 -11.23009 -11.11108 -10.85871 -10.66581 -9.99851 -9.89811 -9.71007 -9.46751 -8.93012 -8.70481 -6.37000 -4.38844 -0.24885 0.53976 0.61954 2.15261 2.24347 2.29386 3.04072 3.09259 3.17312 3.17732 3.21832 3.33641 3.38824 3.66121 3.90311 4.12964 4.15186 4.24193 4.47009 4.61345 4.77338 4.96683 5.00032 5.21721 5.28199 5.47723 5.57606 5.77057 6.05628 6.16881 6.48238 6.52938 6.94221 6.95579 7.08707 7.26766 7.69607 8.21307 8.67287 9.22390 10.74748 Molecular weight = 348.05amu Principal moments of inertia in cm(-1) A = 0.010009 B = 0.006092 C = 0.004851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2796.848488 B = 4595.328229 C = 5771.154276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.241 3.759 3 H 0.036 0.964 4 C -0.520 4.520 5 H 0.085 0.915 6 C 0.083 3.917 7 N -0.882 5.882 8 Si 0.845 3.155 9 H -0.268 1.268 10 H -0.253 1.253 11 H -0.279 1.279 12 N -1.087 6.087 13 S 2.677 3.323 14 O -0.967 6.967 15 O -0.953 6.953 16 C -0.647 4.647 17 C 0.018 3.982 18 C -0.090 4.090 19 C 0.072 3.928 20 C 0.233 3.767 21 N -0.370 5.370 22 C -0.166 4.166 23 C 0.505 3.495 24 F -0.166 7.166 25 F -0.168 7.168 26 F -0.172 7.172 27 C 0.026 3.974 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.041 0.959 31 H 0.269 0.731 32 H 0.417 0.583 33 H 0.165 0.835 34 H 0.157 0.843 35 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.723 4.840 -10.826 12.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.137 3.863 3 H 0.053 0.947 4 C -0.560 4.560 5 H 0.103 0.897 6 C -0.123 4.123 7 N -0.518 5.518 8 Si 0.670 3.330 9 H -0.193 1.193 10 H -0.177 1.177 11 H -0.204 1.204 12 N -0.849 5.849 13 S 2.763 3.237 14 O -0.957 6.957 15 O -0.943 6.943 16 C -0.730 4.730 17 C -0.001 4.001 18 C -0.111 4.111 19 C 0.069 3.931 20 C -0.084 4.084 21 N -0.044 5.044 22 C -0.171 4.171 23 C 0.451 3.549 24 F -0.147 7.147 25 F -0.149 7.149 26 F -0.153 7.153 27 C 0.007 3.993 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.060 0.940 31 H 0.079 0.921 32 H 0.252 0.748 33 H 0.182 0.818 34 H 0.175 0.825 35 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 4.768 6.138 -11.016 13.482 hybrid contribution 0.306 0.970 0.870 1.338 sum 5.073 7.108 -10.146 13.387 Atomic orbital electron populations 1.22379 0.97600 1.01235 1.00587 1.18961 0.91660 0.91969 0.83756 0.94669 1.21054 1.44612 0.96138 0.94184 0.89675 1.24932 0.93870 0.98023 0.95430 1.69849 1.43306 1.36166 1.02477 0.87336 0.80098 0.86581 0.78977 1.19274 1.17738 1.20414 1.55813 1.79982 1.18932 1.30220 1.02651 0.73739 0.73700 0.73604 1.93560 1.82166 1.60795 1.59174 1.93596 1.49473 1.67084 1.84143 1.31737 1.18530 1.09615 1.13161 1.21154 0.89894 0.99656 0.89396 1.21349 1.01064 0.91057 0.97631 1.15793 0.86548 0.92949 0.97849 1.25444 0.93649 0.94200 0.95070 1.81242 1.09612 1.07384 1.06185 1.20057 0.94536 0.94631 1.07830 1.18148 0.74699 0.85828 0.76275 1.93223 1.30428 1.94974 1.96059 1.93272 1.84408 1.96620 1.40623 1.93240 1.83962 1.67549 1.70561 1.20803 0.99554 0.90966 0.88020 0.92746 0.92290 0.94019 0.92055 0.74779 0.81799 0.82546 0.81753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.99 9.47 37.16 0.35 -2.64 16 2 C 0.24 4.81 2.36 -69.08 -0.16 4.65 16 3 H 0.04 0.70 4.55 -51.93 -0.24 0.47 16 4 C -0.52 -12.40 9.11 -34.44 -0.31 -12.71 16 5 H 0.09 2.18 8.06 -52.48 -0.42 1.75 16 6 C 0.08 2.11 5.47 -17.82 -0.10 2.02 16 7 N -0.88 -24.25 13.96 55.43 0.77 -23.48 16 8 Si 0.84 19.03 26.77 -169.99 -4.55 14.48 16 9 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 10 H -0.25 -5.33 6.93 56.52 0.39 -4.94 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 12 N -1.09 -17.89 5.46 -5.88 -0.03 -17.92 16 13 S 2.68 40.58 5.65 -107.50 -0.61 39.97 16 14 O -0.97 -15.13 17.27 -57.17 -0.99 -16.11 16 15 O -0.95 -16.38 16.62 -57.17 -0.95 -17.33 16 16 C -0.65 -8.90 5.82 -39.49 -0.23 -9.13 16 17 C 0.02 0.20 9.50 -39.64 -0.38 -0.18 16 18 C -0.09 -0.90 9.76 -39.17 -0.38 -1.29 16 19 C 0.07 0.91 5.71 -106.93 -0.61 0.30 16 20 C 0.23 3.11 13.19 -22.47 -0.30 2.82 16 21 N -0.37 -5.44 18.54 41.84 0.78 -4.67 16 22 C -0.17 -2.36 5.40 -104.21 -0.56 -2.92 16 23 C 0.50 7.44 2.89 36.01 0.10 7.55 16 24 F -0.17 -2.44 15.98 2.25 0.04 -2.40 16 25 F -0.17 -2.71 16.53 2.25 0.04 -2.68 16 26 F -0.17 -2.37 16.53 2.25 0.04 -2.33 16 27 C 0.03 0.37 8.28 -39.64 -0.33 0.04 16 28 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.06 1.14 8.01 -51.93 -0.42 0.72 16 30 H 0.04 0.73 7.74 -51.93 -0.40 0.33 16 31 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 32 H 0.42 6.12 8.83 -34.47 -0.30 5.82 16 33 H 0.16 1.38 7.60 -52.48 -0.40 0.98 16 34 H 0.16 1.01 8.06 -52.48 -0.42 0.59 16 35 H 0.17 2.31 6.69 -52.49 -0.35 1.96 16 LS Contribution 337.39 15.07 5.08 5.08 Total: -1.00 -29.61 337.39 -5.81 -35.42 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -2.52 Total: 3.46 kcal Atomic # 6 Polarization: -8.59 SS G_CDS: -2.91 Total: -11.50 kcal Atomic # 7 Polarization: -47.58 SS G_CDS: 1.52 Total: -46.06 kcal Atomic # 8 Polarization: -31.51 SS G_CDS: -1.94 Total: -33.45 kcal Atomic # 9 Polarization: -7.52 SS G_CDS: 0.11 Total: -7.41 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -4.55 Total: 14.48 kcal Atomic # 16 Polarization: 40.58 SS G_CDS: -0.61 Total: 39.97 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.61 -5.81 -35.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083537819.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.109 kcal (2) G-P(sol) polarization free energy of solvation -29.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds