Wall clock time and date at job start Wed Apr 1 2020 06:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 O 1.42098 * 110.54492 * 2 1 4 4 O 1.42104 * 110.54003 * 223.24684 * 2 1 3 5 5 N 1.65604 * 104.44831 * 111.62422 * 2 1 3 6 6 C 1.46503 * 119.99677 * 64.99833 * 5 2 1 7 7 C 1.53005 * 109.46690 * 164.99864 * 6 5 2 8 8 N 1.46503 * 109.46690 * 179.97438 * 7 6 5 9 9 S 1.65600 * 119.99765 * 164.72873 * 8 7 6 10 10 O 1.42094 * 106.40512 * 178.53760 * 9 8 7 11 11 O 1.42106 * 106.40226 * 311.45618 * 9 8 7 12 12 C 1.76198 * 107.22067 * 64.99582 * 9 8 7 13 13 C 1.38640 * 119.75037 * 269.72949 * 12 9 8 14 14 C 1.37618 * 120.24754 * 179.72238 * 13 12 9 15 15 C 1.40708 * 119.74303 * 0.56852 * 14 13 12 16 16 C 1.41395 * 120.24350 * 179.68190 * 15 14 13 17 17 H 1.07999 * 120.00421 * 204.40366 * 16 15 14 18 18 C 1.39948 * 120.00045 * 24.41232 * 16 15 14 19 19 N 1.30828 * 119.99938 * 17.83864 * 18 16 15 20 20 Si 1.86804 * 120.00206 * 197.84763 * 18 16 15 21 21 H 1.48497 * 109.46953 * 59.99362 * 20 18 16 22 22 H 1.48494 * 109.47057 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.46965 * 299.99721 * 20 18 16 24 24 C 1.40718 * 119.51587 * 359.70656 * 15 14 13 25 25 C 1.37623 * 119.74191 * 359.97438 * 24 15 14 26 26 H 1.09005 * 109.46882 * 308.37729 * 1 2 3 27 27 H 1.08996 * 109.46905 * 68.36880 * 1 2 3 28 28 H 1.08995 * 109.47149 * 188.38072 * 1 2 3 29 29 H 0.96994 * 120.00078 * 244.99310 * 5 2 1 30 30 H 1.08997 * 109.47349 * 45.00244 * 6 5 2 31 31 H 1.08999 * 109.46997 * 284.99780 * 6 5 2 32 32 H 1.08997 * 109.46914 * 60.00114 * 7 6 5 33 33 H 1.08999 * 109.47332 * 299.99711 * 7 6 5 34 34 H 0.96997 * 120.00372 * 344.99577 * 8 7 6 35 35 H 1.08001 * 119.87510 * 359.97438 * 13 12 9 36 36 H 1.07997 * 120.12712 * 180.27635 * 14 13 12 37 37 H 0.96994 * 120.00050 * 180.02562 * 19 18 16 38 38 H 1.07995 * 120.13001 * 179.97438 * 24 15 14 39 39 H 1.07999 * 119.87507 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3127 -0.9693 -0.9117 5 7 2.2273 -0.5910 1.4908 6 6 1.8907 -1.9706 1.8508 7 6 2.6875 -2.3831 3.0902 8 7 2.3505 -3.7625 3.4505 9 16 3.3157 -4.6032 4.5012 10 8 2.7102 -5.8774 4.6705 11 8 4.6505 -4.4314 4.0449 12 6 3.2158 -3.7935 6.0629 13 6 4.1148 -2.7848 6.3737 14 6 4.0425 -2.1417 7.5882 15 6 3.0589 -2.5196 8.5207 16 6 2.9793 -1.8705 9.7744 17 1 2.5304 -2.3759 10.6166 18 6 3.4822 -0.5731 9.9238 19 7 3.7013 0.1691 8.8689 20 14 3.8408 0.0991 11.6294 21 1 4.8542 -0.7575 12.2960 22 1 4.3621 1.4849 11.5158 23 1 2.5916 0.1039 12.4322 24 6 2.1554 -3.5486 8.1968 25 6 2.2422 -4.1734 6.9737 26 1 -0.3633 0.6381 0.8057 27 1 -0.3633 0.3788 -0.9553 28 1 -0.3633 -1.0166 0.1498 29 1 2.6921 -0.0237 2.1256 30 1 2.1393 -2.6334 1.0219 31 1 0.8242 -2.0405 2.0646 32 1 2.4389 -1.7203 3.9190 33 1 3.7540 -2.3132 2.8763 34 1 1.5642 -4.1848 3.0707 35 1 4.8721 -2.5000 5.6583 36 1 4.7409 -1.3532 7.8264 37 1 4.0502 1.0681 8.9724 38 1 1.3969 -3.8469 8.9053 39 1 1.5501 -4.9637 6.7230 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092131181.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:59:13 Heat of formation + Delta-G solvation = -135.809276 kcal Electronic energy + Delta-G solvation = -25825.919693 eV Core-core repulsion = 21794.162657 eV Total energy + Delta-G solvation = -4031.757035 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 348.069 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -37.63783 -37.42747 -36.91584 -36.46138 -36.19024 -35.19067 -34.10224 -33.81976 -30.31662 -29.82505 -29.52455 -27.78533 -25.87767 -22.93050 -21.55788 -21.18937 -19.79787 -19.00438 -17.98829 -17.67591 -17.33433 -16.77244 -16.50771 -16.24037 -15.71693 -15.54955 -15.22230 -14.91982 -14.39284 -14.16808 -13.67586 -13.52886 -13.44910 -13.26810 -12.60327 -12.57009 -12.44101 -12.34475 -12.25036 -12.22241 -12.14950 -11.84473 -11.51489 -11.41387 -11.36832 -11.32562 -11.27289 -11.21744 -10.94783 -10.48284 -9.88632 -9.78790 -9.68735 -9.55253 -9.16032 -8.02401 -7.76549 -7.20452 -4.86127 -0.03120 1.16796 2.19584 2.41498 2.84278 2.85495 2.87155 2.91359 3.51872 3.61860 3.67340 3.90332 4.18002 4.36295 4.43661 4.54894 4.64070 4.87735 5.08458 5.15872 5.29727 5.32818 5.35302 5.65169 5.78545 6.00226 6.05711 6.08166 6.62434 6.64996 6.69615 6.84812 6.98946 7.18048 7.28335 7.36805 7.57500 7.71284 7.91116 8.25968 8.45491 8.59076 9.70850 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.010509 B = 0.003003 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2663.624262 B = 9323.070413 C =11295.568359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.674 4.674 2 S 2.619 3.381 3 O -0.958 6.958 4 O -0.957 6.957 5 N -1.117 6.117 6 C 0.108 3.892 7 C 0.114 3.886 8 N -1.126 6.126 9 S 2.695 3.305 10 O -0.984 6.984 11 O -0.982 6.982 12 C -0.789 4.789 13 C -0.018 4.018 14 C -0.182 4.182 15 C 0.139 3.861 16 C -0.434 4.434 17 H 0.087 0.913 18 C 0.073 3.927 19 N -0.765 5.765 20 Si 0.918 3.082 21 H -0.259 1.259 22 H -0.274 1.274 23 H -0.261 1.261 24 C -0.240 4.240 25 C 0.003 3.997 26 H 0.130 0.870 27 H 0.127 0.873 28 H 0.128 0.872 29 H 0.423 0.577 30 H 0.088 0.912 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.411 0.589 35 H 0.104 0.896 36 H 0.123 0.877 37 H 0.290 0.710 38 H 0.100 0.900 39 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.191 2.579 -10.988 13.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.824 4.824 2 S 2.710 3.290 3 O -0.949 6.949 4 O -0.947 6.947 5 N -0.878 5.878 6 C -0.020 4.020 7 C -0.014 4.014 8 N -0.883 5.883 9 S 2.794 3.206 10 O -0.974 6.974 11 O -0.972 6.972 12 C -0.885 4.885 13 C -0.038 4.038 14 C -0.203 4.203 15 C 0.136 3.864 16 C -0.461 4.461 17 H 0.106 0.894 18 C -0.150 4.150 19 N -0.387 5.387 20 Si 0.741 3.259 21 H -0.183 1.183 22 H -0.199 1.199 23 H -0.186 1.186 24 C -0.260 4.260 25 C -0.017 4.017 26 H 0.149 0.851 27 H 0.146 0.854 28 H 0.146 0.854 29 H 0.258 0.742 30 H 0.106 0.894 31 H 0.089 0.911 32 H 0.097 0.903 33 H 0.105 0.895 34 H 0.243 0.757 35 H 0.122 0.878 36 H 0.140 0.860 37 H 0.101 0.899 38 H 0.118 0.882 39 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -5.967 2.305 -12.086 13.674 hybrid contribution -1.050 0.937 1.717 2.220 sum -7.018 3.242 -10.369 12.934 Atomic orbital electron populations 1.30535 1.28544 1.11714 1.11593 1.04607 0.77488 0.73802 0.73104 1.93632 1.77931 1.37649 1.85644 1.93626 1.76959 1.61836 1.62231 1.55459 1.74434 1.21124 1.36806 1.21487 0.99488 0.81999 0.99030 1.21293 1.00574 0.82984 0.96557 1.55692 1.44208 1.24141 1.64221 1.01208 0.72674 0.72919 0.73826 1.93497 1.77990 1.38942 1.87018 1.93495 1.35565 1.86632 1.81489 1.29120 1.15240 1.22878 1.21270 1.20271 0.94492 0.92213 0.96836 1.21339 1.01034 1.03037 0.94850 1.17850 0.87840 0.88768 0.91974 1.19935 1.31328 0.98205 0.96667 0.89449 1.26134 0.92356 0.96916 0.99565 1.69794 1.28311 1.08845 1.31769 0.86187 0.80229 0.78339 0.81169 1.18333 1.19854 1.18560 1.21053 1.03014 1.04315 0.97637 1.20159 0.93544 0.94672 0.93349 0.85087 0.85422 0.85365 0.74177 0.89359 0.91074 0.90346 0.89490 0.75677 0.87842 0.85956 0.89870 0.88214 0.87773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.67 -3.04 10.89 101.05 1.10 -1.94 16 2 S 2.62 21.38 6.10 -107.50 -0.66 20.73 16 3 O -0.96 -11.30 18.08 -57.54 -1.04 -12.34 16 4 O -0.96 -11.37 17.50 -57.54 -1.01 -12.37 16 5 N -1.12 -8.97 5.89 -10.61 -0.06 -9.03 16 6 C 0.11 0.91 6.27 -4.04 -0.03 0.88 16 7 C 0.11 1.32 6.37 -4.04 -0.03 1.30 16 8 N -1.13 -14.58 6.00 -10.61 -0.06 -14.64 16 9 S 2.70 48.31 5.73 -107.50 -0.62 47.70 16 10 O -0.98 -19.58 17.26 -57.17 -0.99 -20.57 16 11 O -0.98 -20.00 16.72 -57.17 -0.96 -20.95 16 12 C -0.79 -16.34 5.97 -39.29 -0.23 -16.57 16 13 C -0.02 -0.39 9.49 -39.66 -0.38 -0.77 16 14 C -0.18 -4.35 8.70 -38.88 -0.34 -4.69 16 15 C 0.14 3.39 5.57 -106.83 -0.60 2.80 16 16 C -0.43 -10.29 9.05 -37.74 -0.34 -10.63 16 17 H 0.09 1.96 7.91 -52.49 -0.41 1.54 16 18 C 0.07 1.61 5.14 -17.34 -0.09 1.52 16 19 N -0.76 -17.38 10.95 55.55 0.61 -16.77 16 20 Si 0.92 16.49 29.60 -169.99 -5.03 11.46 16 21 H -0.26 -4.69 7.11 56.52 0.40 -4.28 16 22 H -0.27 -4.79 7.11 56.52 0.40 -4.39 16 23 H -0.26 -4.64 7.11 56.52 0.40 -4.23 16 24 C -0.24 -5.43 9.80 -38.87 -0.38 -5.81 16 25 C 0.00 0.06 9.49 -39.66 -0.38 -0.31 16 26 H 0.13 0.47 8.14 -51.92 -0.42 0.05 16 27 H 0.13 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.13 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.42 3.15 8.62 -34.47 -0.30 2.85 16 30 H 0.09 0.73 7.69 -51.93 -0.40 0.33 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.09 1.07 7.75 -51.93 -0.40 0.67 16 34 H 0.41 4.08 8.65 -34.47 -0.30 3.78 16 35 H 0.10 2.08 7.59 -52.49 -0.40 1.68 16 36 H 0.12 2.97 6.16 -52.49 -0.32 2.64 16 37 H 0.29 5.93 8.30 -40.82 -0.34 5.59 16 38 H 0.10 2.08 8.06 -52.49 -0.42 1.66 16 39 H 0.10 1.98 7.60 -52.49 -0.40 1.58 16 LS Contribution 360.91 15.07 5.44 5.44 Total: -1.00 -34.96 360.91 -10.66 -45.62 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -4.60 Total: 9.95 kcal Atomic # 6 Polarization: -32.54 SS G_CDS: -1.68 Total: -34.22 kcal Atomic # 7 Polarization: -40.92 SS G_CDS: 0.48 Total: -40.43 kcal Atomic # 8 Polarization: -62.25 SS G_CDS: -3.99 Total: -66.23 kcal Atomic # 14 Polarization: 16.49 SS G_CDS: -5.03 Total: 11.46 kcal Atomic # 16 Polarization: 69.69 SS G_CDS: -1.27 Total: 68.42 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.96 -10.66 -45.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092131181.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.191 kcal (2) G-P(sol) polarization free energy of solvation -34.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds