Wall clock time and date at job start Wed Apr 1 2020 06:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 O 1.42098 * 110.54492 * 2 1 4 4 O 1.42104 * 110.54003 * 223.24684 * 2 1 3 5 5 N 1.65604 * 104.44831 * 111.62422 * 2 1 3 6 6 C 1.46503 * 119.99677 * 64.99833 * 5 2 1 7 7 C 1.53005 * 109.46690 * 164.99864 * 6 5 2 8 8 N 1.46503 * 109.46690 * 179.97438 * 7 6 5 9 9 S 1.65600 * 119.99765 * 164.72873 * 8 7 6 10 10 O 1.42094 * 106.40512 * 178.53760 * 9 8 7 11 11 O 1.42106 * 106.40226 * 311.45618 * 9 8 7 12 12 C 1.76198 * 107.22067 * 64.99582 * 9 8 7 13 13 C 1.38640 * 119.75037 * 269.72949 * 12 9 8 14 14 C 1.37618 * 120.24754 * 179.72238 * 13 12 9 15 15 C 1.40708 * 119.74303 * 0.56852 * 14 13 12 16 16 C 1.41395 * 120.24350 * 179.68190 * 15 14 13 17 17 H 1.07999 * 120.00421 * 204.40366 * 16 15 14 18 18 C 1.39948 * 120.00045 * 24.41232 * 16 15 14 19 19 N 1.30828 * 119.99938 * 17.83864 * 18 16 15 20 20 Si 1.86804 * 120.00206 * 197.84763 * 18 16 15 21 21 H 1.48497 * 109.46953 * 59.99362 * 20 18 16 22 22 H 1.48494 * 109.47057 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.46965 * 299.99721 * 20 18 16 24 24 C 1.40718 * 119.51587 * 359.70656 * 15 14 13 25 25 C 1.37623 * 119.74191 * 359.97438 * 24 15 14 26 26 H 1.09005 * 109.46882 * 308.37729 * 1 2 3 27 27 H 1.08996 * 109.46905 * 68.36880 * 1 2 3 28 28 H 1.08995 * 109.47149 * 188.38072 * 1 2 3 29 29 H 0.96994 * 120.00078 * 244.99310 * 5 2 1 30 30 H 1.08997 * 109.47349 * 45.00244 * 6 5 2 31 31 H 1.08999 * 109.46997 * 284.99780 * 6 5 2 32 32 H 1.08997 * 109.46914 * 60.00114 * 7 6 5 33 33 H 1.08999 * 109.47332 * 299.99711 * 7 6 5 34 34 H 0.96997 * 120.00372 * 344.99577 * 8 7 6 35 35 H 1.08001 * 119.87510 * 359.97438 * 13 12 9 36 36 H 1.07997 * 120.12712 * 180.27635 * 14 13 12 37 37 H 0.96994 * 120.00050 * 180.02562 * 19 18 16 38 38 H 1.07995 * 120.13001 * 179.97438 * 24 15 14 39 39 H 1.07999 * 119.87507 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3127 -0.9693 -0.9117 5 7 2.2273 -0.5910 1.4908 6 6 1.8907 -1.9706 1.8508 7 6 2.6875 -2.3831 3.0902 8 7 2.3505 -3.7625 3.4505 9 16 3.3157 -4.6032 4.5012 10 8 2.7102 -5.8774 4.6705 11 8 4.6505 -4.4314 4.0449 12 6 3.2158 -3.7935 6.0629 13 6 4.1148 -2.7848 6.3737 14 6 4.0425 -2.1417 7.5882 15 6 3.0589 -2.5196 8.5207 16 6 2.9793 -1.8705 9.7744 17 1 2.5304 -2.3759 10.6166 18 6 3.4822 -0.5731 9.9238 19 7 3.7013 0.1691 8.8689 20 14 3.8408 0.0991 11.6294 21 1 4.8542 -0.7575 12.2960 22 1 4.3621 1.4849 11.5158 23 1 2.5916 0.1039 12.4322 24 6 2.1554 -3.5486 8.1968 25 6 2.2422 -4.1734 6.9737 26 1 -0.3633 0.6381 0.8057 27 1 -0.3633 0.3788 -0.9553 28 1 -0.3633 -1.0166 0.1498 29 1 2.6921 -0.0237 2.1256 30 1 2.1393 -2.6334 1.0219 31 1 0.8242 -2.0405 2.0646 32 1 2.4389 -1.7203 3.9190 33 1 3.7540 -2.3132 2.8763 34 1 1.5642 -4.1848 3.0707 35 1 4.8721 -2.5000 5.6583 36 1 4.7409 -1.3532 7.8264 37 1 4.0502 1.0681 8.9724 38 1 1.3969 -3.8469 8.9053 39 1 1.5501 -4.9637 6.7230 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092131181.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:59:11 Heat of formation + Delta-G solvation = -165.599115 kcal Electronic energy + Delta-G solvation = -25827.211477 eV Core-core repulsion = 21794.162657 eV Total energy + Delta-G solvation = -4033.048820 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 348.069 amu Computer time = 3.64 seconds Orbital eigenvalues (eV) -39.35955 -38.25988 -38.11826 -37.60614 -36.96966 -36.76422 -35.78577 -34.73729 -32.04351 -31.26436 -30.22698 -28.65790 -27.59963 -23.79482 -23.23638 -22.91656 -20.60728 -20.23648 -19.40049 -18.76025 -18.67038 -18.14580 -17.29535 -17.18905 -17.03990 -16.91041 -16.07801 -15.80136 -15.74205 -15.63416 -15.11656 -14.91584 -14.09450 -14.04579 -13.94957 -13.91404 -13.58846 -13.39898 -13.36545 -13.32053 -13.15405 -13.08225 -13.01435 -12.98116 -12.87845 -12.86695 -12.56971 -12.31539 -12.00438 -11.93334 -11.52778 -11.33285 -11.20688 -10.47212 -10.30737 -9.76981 -9.52439 -8.86183 -6.63259 -0.64686 -0.27645 0.50732 1.08465 1.36769 1.45034 1.50152 1.76087 2.11942 2.31901 2.56114 2.94579 2.96691 3.32100 3.55049 3.59266 3.75445 4.09828 4.16118 4.25082 4.33937 4.35679 4.47755 4.56492 4.65519 4.89609 4.93537 4.96336 5.01290 5.12242 5.19062 5.26320 5.54571 5.62047 5.78874 5.95302 6.06804 6.17567 6.24903 6.51169 6.70276 6.83134 8.08328 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.010509 B = 0.003003 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2663.624262 B = 9323.070413 C =11295.568359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.650 4.650 2 S 2.626 3.374 3 O -1.002 7.002 4 O -1.001 7.001 5 N -1.120 6.120 6 C 0.107 3.893 7 C 0.104 3.896 8 N -1.107 6.107 9 S 2.729 3.271 10 O -0.999 6.999 11 O -1.005 7.005 12 C -0.796 4.796 13 C -0.020 4.020 14 C -0.207 4.207 15 C 0.112 3.888 16 C -0.468 4.468 17 H 0.090 0.910 18 C 0.037 3.963 19 N -0.792 5.792 20 Si 0.988 3.012 21 H -0.261 1.261 22 H -0.264 1.264 23 H -0.255 1.255 24 C -0.258 4.258 25 C 0.000 4.000 26 H 0.148 0.852 27 H 0.145 0.855 28 H 0.151 0.849 29 H 0.424 0.576 30 H 0.091 0.909 31 H 0.109 0.891 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.429 0.571 35 H 0.115 0.885 36 H 0.110 0.890 37 H 0.298 0.702 38 H 0.110 0.890 39 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.085 2.605 -11.521 14.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.804 4.804 2 S 2.722 3.278 3 O -0.993 6.993 4 O -0.991 6.991 5 N -0.881 5.881 6 C -0.021 4.021 7 C -0.024 4.024 8 N -0.869 5.869 9 S 2.824 3.176 10 O -0.990 6.990 11 O -0.995 6.995 12 C -0.889 4.889 13 C -0.040 4.040 14 C -0.228 4.228 15 C 0.109 3.891 16 C -0.494 4.494 17 H 0.108 0.892 18 C -0.183 4.183 19 N -0.415 5.415 20 Si 0.807 3.193 21 H -0.185 1.185 22 H -0.188 1.188 23 H -0.179 1.179 24 C -0.279 4.279 25 C -0.019 4.019 26 H 0.167 0.833 27 H 0.164 0.836 28 H 0.169 0.831 29 H 0.259 0.741 30 H 0.110 0.890 31 H 0.127 0.873 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.266 0.734 35 H 0.133 0.867 36 H 0.128 0.872 37 H 0.110 0.890 38 H 0.128 0.872 39 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -7.832 2.327 -12.598 15.015 hybrid contribution -0.541 0.874 1.722 2.005 sum -8.373 3.201 -10.876 14.094 Atomic orbital electron populations 1.30316 1.22780 1.13886 1.13457 1.04152 0.79312 0.72115 0.72215 1.93573 1.80164 1.39455 1.86059 1.93568 1.79309 1.62594 1.63597 1.55339 1.75188 1.21067 1.36470 1.21575 1.01070 0.82044 0.97402 1.21478 1.00780 0.81852 0.98271 1.55121 1.44441 1.24707 1.62648 1.00191 0.72303 0.72154 0.72966 1.93471 1.78198 1.40064 1.87229 1.93471 1.37629 1.86908 1.81459 1.29627 1.14188 1.21760 1.23320 1.20456 0.94913 0.92244 0.96363 1.21347 1.01537 1.03862 0.96005 1.18185 0.88519 0.89776 0.92667 1.20202 1.33086 0.99357 0.96788 0.89206 1.26932 0.91521 0.96571 1.03253 1.69821 1.28556 1.09453 1.33686 0.85145 0.80013 0.77823 0.76287 1.18536 1.18808 1.17867 1.21280 1.03316 1.04595 0.98674 1.20460 0.93879 0.94803 0.92788 0.83341 0.83645 0.83056 0.74063 0.89034 0.87304 0.90421 0.90620 0.73416 0.86679 0.87227 0.89043 0.87193 0.85433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -3.35 10.89 113.37 1.23 -2.11 16 2 S 2.63 39.68 6.10 -56.49 -0.34 39.34 16 3 O -1.00 -23.56 18.08 -127.65 -2.31 -25.86 16 4 O -1.00 -23.18 17.50 -127.65 -2.23 -25.42 16 5 N -1.12 -16.35 5.89 -187.48 -1.10 -17.45 16 6 C 0.11 1.52 6.27 86.38 0.54 2.06 16 7 C 0.10 2.24 6.37 86.38 0.55 2.79 16 8 N -1.11 -26.09 6.00 -187.48 -1.12 -27.21 16 9 S 2.73 93.81 5.73 -56.49 -0.32 93.48 16 10 O -1.00 -37.79 17.26 -128.00 -2.21 -40.00 16 11 O -1.00 -39.99 16.72 -128.00 -2.14 -42.13 16 12 C -0.80 -32.52 5.97 22.46 0.13 -32.39 16 13 C -0.02 -0.88 9.49 22.22 0.21 -0.67 16 14 C -0.21 -10.21 8.70 22.73 0.20 -10.02 16 15 C 0.11 5.60 5.57 -21.29 -0.12 5.49 16 16 C -0.47 -22.71 9.05 23.46 0.21 -22.50 16 17 H 0.09 4.13 7.91 -2.91 -0.02 4.11 16 18 C 0.04 1.66 5.14 85.26 0.44 2.10 16 19 N -0.79 -36.69 10.95 21.83 0.24 -36.45 16 20 Si 0.99 33.68 29.60 68.60 2.03 35.71 16 21 H -0.26 -8.91 7.11 99.48 0.71 -8.20 16 22 H -0.26 -8.48 7.11 99.48 0.71 -7.77 16 23 H -0.25 -8.35 7.11 99.48 0.71 -7.65 16 24 C -0.26 -11.82 9.80 22.73 0.22 -11.60 16 25 C 0.00 0.02 9.49 22.22 0.21 0.23 16 26 H 0.15 0.41 8.14 -2.39 -0.02 0.39 16 27 H 0.15 0.39 8.14 -2.39 -0.02 0.37 16 28 H 0.15 0.21 8.14 -2.39 -0.02 0.19 16 29 H 0.42 6.07 8.62 -96.75 -0.83 5.24 16 30 H 0.09 1.28 7.69 -2.39 -0.02 1.26 16 31 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.08 1.82 7.75 -2.39 -0.02 1.80 16 34 H 0.43 7.11 8.65 -96.75 -0.84 6.27 16 35 H 0.12 4.69 7.59 -2.91 -0.02 4.67 16 36 H 0.11 5.56 6.16 -2.91 -0.02 5.54 16 37 H 0.30 12.32 8.30 -92.71 -0.77 11.55 16 38 H 0.11 4.63 8.06 -2.91 -0.02 4.61 16 39 H 0.13 4.63 7.60 -2.91 -0.02 4.61 16 Total: -1.00 -76.96 360.91 -6.24 -83.20 By element: Atomic # 1 Polarization: 29.96 SS G_CDS: -0.56 Total: 29.40 kcal Atomic # 6 Polarization: -70.45 SS G_CDS: 3.83 Total: -66.61 kcal Atomic # 7 Polarization: -79.13 SS G_CDS: -1.99 Total: -81.11 kcal Atomic # 8 Polarization: -124.52 SS G_CDS: -8.89 Total: -133.41 kcal Atomic # 14 Polarization: 33.68 SS G_CDS: 2.03 Total: 35.71 kcal Atomic # 16 Polarization: 133.49 SS G_CDS: -0.67 Total: 132.82 kcal Total: -76.96 -6.24 -83.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092131181.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.397 kcal (2) G-P(sol) polarization free energy of solvation -76.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.64 seconds