Wall clock time and date at job start Wed Apr 1 2020 04:59:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47334 * 59.85396 * 3 2 1 5 5 N 1.46497 * 109.47056 * 179.97438 * 4 3 2 6 6 C 1.46502 * 119.99784 * 274.99695 * 5 4 3 7 7 C 1.50701 * 109.47275 * 275.00190 * 6 5 4 8 8 H 1.08001 * 119.99717 * 0.02562 * 7 6 5 9 9 C 1.37876 * 120.00273 * 179.97438 * 7 6 5 10 10 N 1.31516 * 119.99739 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 120.00340 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.46809 * 60.00224 * 11 9 7 13 13 H 1.48498 * 109.47385 * 180.02562 * 11 9 7 14 14 H 1.48494 * 109.47122 * 300.00588 * 11 9 7 15 15 S 1.65595 * 120.00511 * 94.99875 * 5 4 3 16 16 O 1.42103 * 106.39800 * 336.45875 * 15 5 4 17 17 O 1.42091 * 106.40687 * 203.53963 * 15 5 4 18 18 C 1.76200 * 107.22011 * 89.99461 * 15 5 4 19 19 C 1.38244 * 119.97619 * 114.97813 * 18 15 5 20 20 C 1.38358 * 120.02445 * 179.74772 * 19 18 15 21 21 F 1.35101 * 120.01171 * 180.30523 * 20 19 18 22 22 C 1.38688 * 119.97835 * 0.57546 * 20 19 18 23 23 F 1.35104 * 120.02052 * 179.69753 * 22 20 19 24 24 C 1.38345 * 119.95689 * 359.42955 * 22 20 19 25 25 C 1.38419 * 119.97854 * 295.00895 * 18 15 5 26 26 F 1.35097 * 119.99101 * 359.96987 * 25 18 15 27 27 H 1.08994 * 109.47187 * 299.84990 * 3 2 1 28 28 H 1.09002 * 109.46889 * 179.85055 * 3 2 1 29 29 H 1.09003 * 109.47229 * 59.99891 * 4 3 2 30 30 H 1.09002 * 109.46854 * 299.99680 * 4 3 2 31 31 H 1.09003 * 109.47169 * 34.99933 * 6 5 4 32 32 H 1.09001 * 109.47404 * 155.00322 * 6 5 4 33 33 H 0.97001 * 120.00116 * 180.02562 * 10 9 7 34 34 H 1.08006 * 119.98880 * 0.04753 * 19 18 15 35 35 H 1.07997 * 120.01485 * 180.29410 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1184 -0.7235 -1.2474 5 7 4.5833 -0.7223 -1.2476 6 6 5.3147 0.4267 -1.7871 7 6 5.4585 0.2750 -3.2796 8 1 5.0459 -0.5905 -3.7766 9 6 6.1158 1.2417 -4.0107 10 7 6.6178 2.2959 -3.4055 11 14 6.2946 1.0533 -5.8605 12 1 4.9484 0.9858 -6.4836 13 1 7.0359 2.2180 -6.4074 14 1 7.0422 -0.1941 -6.1611 15 16 5.4126 -2.0196 -0.6382 16 8 4.5317 -2.6691 0.2681 17 8 6.6951 -1.5361 -0.2636 18 6 5.6741 -3.1438 -1.9696 19 6 6.9580 -3.4071 -2.4092 20 6 7.1648 -4.2937 -3.4512 21 9 8.4201 -4.5555 -3.8765 22 6 6.0827 -4.9091 -4.0625 23 9 6.2833 -5.7703 -5.0840 24 6 4.7981 -4.6449 -3.6219 25 6 4.5937 -3.7621 -2.5750 26 9 3.3395 -3.5040 -2.1445 27 1 2.9715 -0.5106 0.8913 28 1 2.9708 1.0285 -0.0027 29 1 2.7548 -0.2122 -2.1387 30 1 2.7555 -1.7514 -1.2447 31 1 4.7666 1.3426 -1.5662 32 1 6.3031 0.4755 -1.3301 33 1 7.0799 2.9762 -3.9199 34 1 7.8003 -2.9243 -1.9360 35 1 3.9552 -5.1273 -4.0942 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123136130.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:18 Heat of formation + Delta-G solvation = -162.820211 kcal Electronic energy + Delta-G solvation = -29098.358614 eV Core-core repulsion = 24388.129605 eV Total energy + Delta-G solvation = -4710.229009 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.054 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.83671 -50.56009 -49.88080 -39.91254 -38.51097 -38.25081 -37.09234 -36.96223 -34.66404 -32.60474 -32.10515 -31.39317 -28.75084 -25.44756 -25.19573 -24.47312 -23.76336 -20.48720 -19.79529 -19.38116 -19.06713 -18.83773 -18.31162 -18.19586 -17.77997 -17.67097 -17.13762 -16.84159 -16.51821 -16.37469 -16.26577 -15.92565 -15.82845 -15.53534 -15.28716 -15.05573 -14.74950 -14.35847 -14.12290 -13.87622 -13.63814 -13.46941 -13.34911 -13.26765 -13.18071 -13.12936 -12.95407 -12.86050 -12.66519 -12.31458 -12.18404 -12.09517 -11.74233 -11.56955 -10.72904 -10.50648 -10.10710 -9.88047 -8.13277 -6.23683 -1.00922 -0.64091 -0.49071 1.44021 1.46842 1.51164 1.54354 1.75926 1.86263 1.95511 2.22139 2.44798 2.46818 2.64152 2.93726 3.01019 3.14349 3.21287 3.45772 3.64242 3.89688 3.93700 4.12120 4.16939 4.31833 4.40976 4.50759 4.54078 4.63598 5.04520 5.11710 5.26676 5.42131 5.51423 5.76420 5.88529 6.15328 6.62366 6.87505 7.46069 8.94010 Molecular weight = 348.05amu Principal moments of inertia in cm(-1) A = 0.008196 B = 0.006038 C = 0.004389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3415.632137 B = 4636.566289 C = 6377.543796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C 0.246 3.754 3 C -0.047 4.047 4 C 0.119 3.881 5 N -0.972 5.972 6 C 0.253 3.747 7 C -0.545 4.545 8 H 0.067 0.933 9 C 0.024 3.976 10 N -0.918 5.918 11 Si 0.936 3.064 12 H -0.268 1.268 13 H -0.288 1.288 14 H -0.274 1.274 15 S 2.699 3.301 16 O -0.958 6.958 17 O -0.967 6.967 18 C -0.699 4.699 19 C 0.002 3.998 20 C 0.033 3.967 21 F -0.123 7.123 22 C 0.151 3.849 23 F -0.110 7.110 24 C -0.167 4.167 25 C 0.215 3.785 26 F -0.105 7.105 27 H 0.129 0.871 28 H 0.135 0.865 29 H 0.098 0.902 30 H 0.096 0.904 31 H 0.049 0.951 32 H 0.037 0.963 33 H 0.265 0.735 34 H 0.178 0.822 35 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.064 -12.319 1.182 12.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.167 5.167 2 C -0.071 4.071 3 C -0.088 4.088 4 C -0.008 4.008 5 N -0.811 5.811 6 C 0.130 3.870 7 C -0.584 4.584 8 H 0.085 0.915 9 C -0.177 4.177 10 N -0.558 5.558 11 Si 0.762 3.238 12 H -0.193 1.193 13 H -0.214 1.214 14 H -0.200 1.200 15 S 2.787 3.213 16 O -0.948 6.948 17 O -0.958 6.958 18 C -0.784 4.784 19 C -0.018 4.018 20 C 0.012 3.988 21 F -0.102 7.102 22 C 0.130 3.870 23 F -0.088 7.088 24 C -0.187 4.187 25 C 0.194 3.806 26 F -0.083 7.083 27 H 0.146 0.854 28 H 0.152 0.848 29 H 0.116 0.884 30 H 0.114 0.886 31 H 0.067 0.933 32 H 0.055 0.945 33 H 0.074 0.926 34 H 0.195 0.805 35 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -3.376 -12.315 1.931 12.914 hybrid contribution 0.900 -0.109 -2.070 2.260 sum -2.477 -12.424 -0.139 12.669 Atomic orbital electron populations 1.81211 1.14261 1.10954 1.10314 1.29160 0.95005 0.91320 0.91602 1.19916 0.80339 1.06606 1.01969 1.21358 0.78436 1.02681 0.98315 1.57250 1.14312 1.31500 1.77999 1.19027 0.92011 0.83526 0.92459 1.21817 1.35901 1.06939 0.93791 0.91495 1.25522 0.95314 0.95127 1.01721 1.69987 1.37765 1.10749 1.37282 0.85948 0.78523 0.77528 0.81792 1.19319 1.21416 1.19986 1.01829 0.73163 0.72689 0.73654 1.93583 1.65892 1.75796 1.59520 1.93555 1.41429 1.79612 1.81201 1.31159 0.98591 1.22277 1.26328 1.20789 0.96954 0.91852 0.92184 1.17681 0.79653 1.02344 0.99136 1.91560 1.36829 1.92827 1.88982 1.17452 0.92800 0.90161 0.86608 1.91605 1.95663 1.66196 1.55322 1.21220 0.97495 1.01481 0.98492 1.16623 0.78428 0.93365 0.92216 1.91583 1.36879 1.91805 1.88061 0.85360 0.84760 0.88400 0.88564 0.93333 0.94509 0.92597 0.80452 0.78052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -14.95 18.54 20.01 0.37 -14.58 16 2 C 0.25 6.24 15.43 89.44 1.38 7.62 16 3 C -0.05 -1.01 6.02 28.79 0.17 -0.84 16 4 C 0.12 3.10 5.18 86.38 0.45 3.55 16 5 N -0.97 -31.24 2.77 -519.84 -1.44 -32.68 16 6 C 0.25 10.32 5.43 85.63 0.47 10.78 16 7 C -0.55 -24.90 9.38 25.60 0.24 -24.66 16 8 H 0.07 2.91 7.81 -2.91 -0.02 2.89 16 9 C 0.02 1.17 5.46 84.65 0.46 1.63 16 10 N -0.92 -48.31 13.29 21.45 0.28 -48.03 16 11 Si 0.94 39.45 29.54 68.60 2.03 41.48 16 12 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 13 H -0.29 -12.28 7.11 99.48 0.71 -11.57 16 14 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 15 S 2.70 86.39 5.29 -56.49 -0.30 86.09 16 16 O -0.96 -30.18 16.40 -128.00 -2.10 -32.28 16 17 O -0.97 -36.28 15.52 -128.00 -1.99 -38.26 16 18 C -0.70 -20.20 5.91 22.31 0.13 -20.07 16 19 C 0.00 0.06 9.52 22.30 0.21 0.27 16 20 C 0.03 0.87 7.31 22.41 0.16 1.04 16 21 F -0.12 -3.37 17.18 44.97 0.77 -2.60 16 22 C 0.15 3.48 7.31 22.40 0.16 3.64 16 23 F -0.11 -2.44 17.18 44.97 0.77 -1.67 16 24 C -0.17 -3.39 10.00 22.35 0.22 -3.17 16 25 C 0.21 5.36 7.21 22.37 0.16 5.52 16 26 F -0.11 -2.53 13.72 44.97 0.62 -1.91 16 27 H 0.13 2.46 8.14 -2.39 -0.02 2.44 16 28 H 0.13 2.59 8.14 -2.39 -0.02 2.57 16 29 H 0.10 2.55 8.11 -2.39 -0.02 2.53 16 30 H 0.10 2.30 5.06 -2.39 -0.01 2.29 16 31 H 0.05 2.00 8.11 -2.39 -0.02 1.98 16 32 H 0.04 1.69 6.91 -2.39 -0.02 1.67 16 33 H 0.26 13.46 8.31 -92.71 -0.77 12.69 16 34 H 0.18 4.84 7.33 -2.91 -0.02 4.82 16 35 H 0.20 2.56 8.06 -2.91 -0.02 2.54 16 Total: -1.00 -59.62 340.90 4.42 -55.20 By element: Atomic # 1 Polarization: 2.75 SS G_CDS: 1.18 Total: 3.93 kcal Atomic # 6 Polarization: -18.91 SS G_CDS: 4.22 Total: -14.69 kcal Atomic # 7 Polarization: -94.50 SS G_CDS: -0.78 Total: -95.28 kcal Atomic # 8 Polarization: -66.46 SS G_CDS: -4.09 Total: -70.55 kcal Atomic # 9 Polarization: -8.34 SS G_CDS: 2.16 Total: -6.18 kcal Atomic # 14 Polarization: 39.45 SS G_CDS: 2.03 Total: 41.48 kcal Atomic # 16 Polarization: 86.39 SS G_CDS: -0.30 Total: 86.09 kcal Total: -59.62 4.42 -55.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123136130.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.623 kcal (2) G-P(sol) polarization free energy of solvation -59.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds