Wall clock time and date at job start Wed Apr 1 2020 06:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35957 * 117.00316 * 2 1 4 4 C 1.38947 * 120.06408 * 269.72591 * 3 2 1 5 5 F 1.35099 * 120.04399 * 0.25277 * 4 3 2 6 6 C 1.38286 * 119.90602 * 180.25093 * 4 3 2 7 7 C 1.38300 * 120.03212 * 0.04195 * 6 4 3 8 8 S 1.76197 * 119.94116 * 179.97438 * 7 6 4 9 9 O 1.42106 * 106.39981 * 23.51736 * 8 7 6 10 10 O 1.42099 * 106.40388 * 156.43899 * 8 7 6 11 11 N 1.65595 * 107.21938 * 269.98218 * 8 7 6 12 12 C 1.46497 * 120.00162 * 64.99267 * 11 8 7 13 13 H 1.08992 * 109.47526 * 335.00563 * 12 11 8 14 14 C 1.53008 * 109.46770 * 95.00584 * 12 11 8 15 15 C 1.50704 * 109.47309 * 215.00175 * 12 11 8 16 16 H 1.07993 * 119.99837 * 0.02562 * 15 12 11 17 17 C 1.37876 * 119.99694 * 180.02562 * 15 12 11 18 18 N 1.31515 * 120.00564 * 0.02562 * 17 15 12 19 19 Si 1.86802 * 119.99638 * 180.02562 * 17 15 12 20 20 H 1.48501 * 109.47403 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47281 * 119.99803 * 19 17 15 22 22 H 1.48497 * 109.47133 * 239.99879 * 19 17 15 23 23 C 1.38223 * 120.12418 * 359.95537 * 7 6 4 24 24 C 1.38222 * 120.09474 * 0.02562 * 23 7 6 25 25 N 1.48022 * 120.01609 * 180.02562 * 24 23 7 26 26 O 1.21794 * 119.99623 * 359.97438 * 25 24 23 27 27 O 1.21802 * 120.00089 * 179.97438 * 25 24 23 28 28 H 1.09000 * 109.47279 * 300.00395 * 1 2 3 29 29 H 1.08998 * 109.47314 * 59.99680 * 1 2 3 30 30 H 1.09002 * 109.47033 * 180.02562 * 1 2 3 31 31 H 1.08004 * 119.98840 * 180.02562 * 6 4 3 32 32 H 0.97006 * 120.00012 * 245.00060 * 11 8 7 33 33 H 1.09004 * 109.47020 * 180.02562 * 14 12 11 34 34 H 1.08998 * 109.46573 * 299.99701 * 14 12 11 35 35 H 1.08996 * 109.47055 * 60.00243 * 14 12 11 36 36 H 0.96997 * 120.00024 * 180.02562 * 18 17 15 37 37 H 1.08001 * 119.95416 * 180.02562 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 2.3675 1.8289 -1.2025 5 9 2.0622 1.2289 -2.3738 6 6 3.0000 3.0587 -1.1987 7 6 3.3131 3.6722 0.0005 8 16 4.1196 5.2388 0.0026 9 8 3.8227 5.8446 -1.2480 10 8 3.8159 5.8448 1.2515 11 7 5.7503 4.9506 0.0070 12 6 6.3814 4.2949 -1.1410 13 1 5.6416 3.6913 -1.6667 14 6 6.9412 5.3564 -2.0903 15 6 7.5023 3.4096 -0.6604 16 1 7.7222 3.3418 0.3947 17 6 8.2468 2.6862 -1.5678 18 7 7.9793 2.7692 -2.8527 19 14 9.6357 1.5883 -0.9719 20 1 9.7321 1.6710 0.5077 21 1 9.3640 0.1846 -1.3730 22 1 10.9156 2.0371 -1.5766 23 6 2.9941 3.0590 1.1976 24 6 2.3615 1.8301 1.1998 25 7 2.0203 1.1753 2.4827 26 8 2.2973 1.7192 3.5366 27 8 1.4624 0.0925 2.4843 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.2499 3.5401 -2.1326 32 1 6.2877 5.2158 0.7698 33 1 7.4103 4.8686 -2.9447 34 1 6.1304 5.9966 -2.4379 35 1 7.6811 5.9599 -1.5646 36 1 8.5030 2.2600 -3.4910 37 1 3.2395 3.5409 2.1325 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186808607.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:46:48 Heat of formation + Delta-G solvation = -141.340493 kcal Electronic energy + Delta-G solvation = -29500.981646 eV Core-core repulsion = 24902.771583 eV Total energy + Delta-G solvation = -4598.210063 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.072 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -50.48108 -43.59193 -41.27622 -39.25589 -38.50244 -37.77323 -37.31304 -37.07226 -34.16725 -33.41658 -32.19908 -30.17030 -28.62580 -27.81956 -27.23100 -24.76988 -24.30940 -22.88231 -21.54180 -20.34161 -20.16757 -19.48456 -19.20991 -18.94932 -18.63431 -18.24546 -17.95416 -17.66992 -17.54373 -17.10911 -16.49824 -16.33785 -16.06239 -15.42954 -15.36651 -14.58880 -14.55831 -14.24929 -14.07449 -14.00499 -13.56703 -13.37577 -13.23287 -13.05973 -13.02505 -12.89667 -12.87464 -12.84341 -12.46038 -12.39408 -12.33586 -12.21874 -12.04290 -11.60072 -11.30161 -11.13030 -10.63968 -10.61479 -10.19765 -8.16959 -6.29943 -1.73330 -1.15328 -0.76050 -0.19697 -0.06789 1.20774 1.41202 1.46709 1.54222 1.76828 1.95500 2.29435 2.42245 2.55877 2.89376 2.99396 3.14188 3.30228 3.34691 3.51650 3.82143 3.91342 4.12427 4.16946 4.23173 4.43383 4.57929 4.62198 4.90768 4.96371 5.11311 5.17870 5.59103 5.64462 5.74977 6.02537 6.05321 6.30881 6.37124 6.81085 7.40443 8.87819 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.010090 B = 0.004522 C = 0.004051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2774.383214 B = 6190.705167 C = 6910.488576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.327 6.327 3 C 0.184 3.816 4 C 0.065 3.935 5 F -0.108 7.108 6 C 0.018 3.982 7 C -0.656 4.656 8 S 2.715 3.285 9 O -0.963 6.963 10 O -0.968 6.968 11 N -1.092 6.092 12 C 0.273 3.727 13 H 0.033 0.967 14 C -0.155 4.155 15 C -0.538 4.538 16 H 0.069 0.931 17 C 0.024 3.976 18 N -0.909 5.909 19 Si 0.949 3.051 20 H -0.267 1.267 21 H -0.287 1.287 22 H -0.281 1.281 23 C 0.055 3.945 24 C -0.079 4.079 25 N 0.034 4.966 26 O -0.164 6.164 27 O -0.135 6.135 28 H 0.055 0.945 29 H 0.067 0.933 30 H 0.137 0.863 31 H 0.188 0.812 32 H 0.423 0.577 33 H 0.071 0.929 34 H 0.037 0.963 35 H 0.039 0.961 36 H 0.265 0.735 37 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.355 -1.426 3.978 14.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.243 6.243 3 C 0.136 3.864 4 C 0.044 3.956 5 F -0.086 7.086 6 C -0.002 4.002 7 C -0.740 4.740 8 S 2.799 3.201 9 O -0.953 6.953 10 O -0.958 6.958 11 N -0.854 5.854 12 C 0.168 3.832 13 H 0.051 0.949 14 C -0.214 4.214 15 C -0.578 4.578 16 H 0.088 0.912 17 C -0.177 4.177 18 N -0.548 5.548 19 Si 0.776 3.224 20 H -0.191 1.191 21 H -0.213 1.213 22 H -0.207 1.207 23 C 0.035 3.965 24 C -0.164 4.164 25 N 0.555 4.445 26 O -0.376 6.376 27 O -0.356 6.356 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.155 0.845 31 H 0.206 0.794 32 H 0.260 0.740 33 H 0.090 0.910 34 H 0.056 0.944 35 H 0.058 0.942 36 H 0.075 0.925 37 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -13.620 -0.650 3.001 13.962 hybrid contribution 0.839 -1.600 0.400 1.850 sum -12.781 -2.251 3.401 13.416 Atomic orbital electron populations 1.23496 0.73615 1.07107 1.01737 1.86100 1.23801 1.20432 1.93958 1.18570 0.92847 0.85602 0.89414 1.17598 1.04048 0.92942 0.81017 1.91608 1.90935 1.82638 1.43391 1.21572 0.87174 0.91271 1.00200 1.31364 1.18260 1.27418 0.96917 1.01461 0.72668 0.72763 0.73171 1.93591 1.84450 1.72676 1.44615 1.93573 1.84199 1.74078 1.43956 1.55409 1.24247 1.76173 1.29599 1.18393 0.92966 0.89929 0.81909 0.94889 1.22158 0.99822 0.98224 1.01225 1.21638 1.16211 1.25811 0.94128 0.91238 1.25538 0.99278 0.97879 0.95024 1.69958 1.41249 1.41919 1.01662 0.85636 0.79564 0.78437 0.78787 1.19119 1.21306 1.20660 1.20916 0.86068 0.89226 1.00253 1.21395 1.13656 0.97728 0.83578 1.43210 0.98676 1.00554 1.02077 1.94574 1.57504 1.66633 1.18935 1.94557 1.40183 1.06810 1.94040 0.92654 0.91410 0.84472 0.79448 0.74028 0.91047 0.94434 0.94207 0.92542 0.78965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 10.45 113.37 1.18 1.72 16 2 O -0.33 -8.26 8.68 -71.90 -0.62 -8.89 16 3 C 0.18 4.96 5.71 22.53 0.13 5.08 16 4 C 0.07 1.75 7.31 22.45 0.16 1.91 16 5 F -0.11 -2.84 17.11 44.97 0.77 -2.07 16 6 C 0.02 0.47 8.87 22.30 0.20 0.67 16 7 C -0.66 -18.12 5.82 22.28 0.13 -17.99 16 8 S 2.71 82.03 5.65 -56.49 -0.32 81.71 16 9 O -0.96 -32.98 16.54 -128.00 -2.12 -35.09 16 10 O -0.97 -30.36 17.27 -128.00 -2.21 -32.57 16 11 N -1.09 -36.58 5.46 -172.52 -0.94 -37.52 16 12 C 0.27 11.48 2.76 44.25 0.12 11.61 16 13 H 0.03 1.43 7.23 -2.39 -0.02 1.42 16 14 C -0.15 -6.63 9.29 71.98 0.67 -5.96 16 15 C -0.54 -25.29 8.76 25.60 0.22 -25.06 16 16 H 0.07 3.16 7.81 -2.91 -0.02 3.13 16 17 C 0.02 1.17 5.30 84.65 0.45 1.62 16 18 N -0.91 -46.66 11.32 21.45 0.24 -46.42 16 19 Si 0.95 39.86 29.54 68.60 2.03 41.89 16 20 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 21 H -0.29 -12.16 7.11 99.48 0.71 -11.45 16 22 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 23 C 0.06 1.47 9.02 22.26 0.20 1.67 16 24 C -0.08 -2.18 6.86 36.46 0.25 -1.93 16 25 N 0.03 0.99 4.45 -46.25 -0.21 0.79 16 26 O -0.16 -4.87 18.45 18.89 0.35 -4.52 16 27 O -0.14 -3.90 16.02 25.61 0.41 -3.49 16 28 H 0.05 0.90 7.45 -2.39 -0.02 0.89 16 29 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.14 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.19 4.69 7.61 -2.91 -0.02 4.66 16 32 H 0.42 12.59 8.83 -96.74 -0.85 11.74 16 33 H 0.07 3.41 6.07 -2.39 -0.01 3.40 16 34 H 0.04 1.49 7.64 -2.39 -0.02 1.47 16 35 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.27 13.08 8.31 -92.71 -0.77 12.31 16 37 H 0.19 4.48 7.16 -2.91 -0.02 4.46 16 Total: -1.00 -59.37 344.51 1.40 -57.97 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: 0.30 Total: 14.88 kcal Atomic # 6 Polarization: -30.39 SS G_CDS: 3.72 Total: -26.67 kcal Atomic # 7 Polarization: -82.25 SS G_CDS: -0.91 Total: -83.16 kcal Atomic # 8 Polarization: -80.36 SS G_CDS: -4.19 Total: -84.56 kcal Atomic # 9 Polarization: -2.84 SS G_CDS: 0.77 Total: -2.07 kcal Atomic # 14 Polarization: 39.86 SS G_CDS: 2.03 Total: 41.89 kcal Atomic # 16 Polarization: 82.03 SS G_CDS: -0.32 Total: 81.71 kcal Total: -59.37 1.40 -57.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186808607.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.369 kcal (2) G-P(sol) polarization free energy of solvation -59.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds