Wall clock time and date at job start Wed Apr 1 2020 05:30:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30874 * 1 3 3 Si 1.86797 * 119.99960 * 2 1 4 4 H 1.48506 * 109.47241 * 359.97438 * 3 2 1 5 5 H 1.48505 * 109.47414 * 119.99917 * 3 2 1 6 6 H 1.48507 * 109.47349 * 239.99913 * 3 2 1 7 7 C 1.39930 * 120.00204 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00157 * 206.06072 * 7 2 1 9 9 C 1.41042 * 119.99656 * 26.06143 * 7 2 1 10 10 C 1.40726 * 120.30697 * 25.50738 * 9 7 2 11 11 C 1.36451 * 119.94755 * 180.02562 * 10 9 7 12 12 C 1.38901 * 120.59986 * 0.02562 * 11 10 9 13 13 C 1.38170 * 120.62635 * 359.97311 * 12 11 10 14 14 C 1.38751 * 120.02302 * 359.72325 * 13 12 11 15 15 N 1.38730 * 120.29450 * 180.27444 * 14 13 12 16 16 S 1.65599 * 119.99677 * 35.53889 * 15 14 13 17 17 O 1.42098 * 106.40286 * 173.60352 * 16 15 14 18 18 O 1.42103 * 106.40405 * 306.51771 * 16 15 14 19 19 C 1.76194 * 107.22071 * 60.06174 * 16 15 14 20 20 C 1.38235 * 120.00357 * 269.72330 * 19 16 15 21 21 C 1.38233 * 120.00515 * 179.76508 * 20 19 16 22 22 C 1.38240 * 119.99643 * 0.48909 * 21 20 19 23 23 N 1.48016 * 120.00063 * 179.77077 * 22 21 20 24 24 O 1.21799 * 120.00326 * 180.02562 * 23 22 21 25 25 O 1.21801 * 120.00082 * 0.02562 * 23 22 21 26 26 C 1.38235 * 119.99754 * 359.78857 * 22 21 20 27 27 C 1.38233 * 120.00533 * 359.95772 * 26 22 21 28 28 H 0.96997 * 119.99719 * 185.90519 * 1 2 3 29 29 H 1.07996 * 120.02577 * 359.97220 * 10 9 7 30 30 H 1.07994 * 119.69850 * 179.97438 * 11 10 9 31 31 H 1.08002 * 119.68821 * 179.97438 * 12 11 10 32 32 H 1.07999 * 119.98617 * 179.97438 * 13 12 11 33 33 H 0.96994 * 119.99983 * 215.53833 * 15 14 13 34 34 H 1.08004 * 119.99495 * 0.02562 * 20 19 16 35 35 H 1.07990 * 120.00464 * 180.26077 * 21 20 19 36 36 H 1.08005 * 119.99529 * 179.97438 * 26 22 21 37 37 H 1.07994 * 120.00306 * 179.97438 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 1.2777 2.7465 -0.0006 5 1 3.0965 1.6965 1.2125 6 1 3.0965 1.6964 -1.2125 7 6 2.0084 -1.2118 0.0005 8 1 3.0061 -1.2592 0.4115 9 6 1.4108 -2.3714 -0.5356 10 6 0.4075 -2.2645 -1.5167 11 6 -0.1661 -3.3911 -2.0300 12 6 0.2303 -4.6485 -1.5927 13 6 1.2130 -4.7817 -0.6306 14 6 1.8182 -3.6535 -0.0955 15 7 2.8094 -3.7809 0.8667 16 16 3.8773 -5.0444 0.7930 17 8 4.8429 -4.8135 1.8096 18 8 3.0942 -6.2279 0.7195 19 6 4.7314 -4.9168 -0.7428 20 6 4.2319 -5.5488 -1.8661 21 6 4.8994 -5.4447 -3.0721 22 6 6.0719 -4.7167 -3.1525 23 7 6.7893 -4.6093 -4.4427 24 8 7.8226 -3.9684 -4.5135 25 8 6.3465 -5.1620 -5.4337 26 6 6.5744 -4.0894 -2.0279 27 6 5.9041 -4.1892 -0.8231 28 1 -0.4849 -0.8356 0.0864 29 1 0.0913 -1.2914 -1.8624 30 1 -0.9359 -3.3044 -2.7824 31 1 -0.2339 -5.5305 -2.0087 32 1 1.5130 -5.7644 -0.2978 33 1 2.8770 -3.1298 1.5825 34 1 3.3179 -6.1206 -1.8024 35 1 4.5070 -5.9350 -3.9507 36 1 7.4906 -3.5210 -2.0907 37 1 6.2970 -3.6995 0.0556 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193355970.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:30:47 Heat of formation + Delta-G solvation = -30.073681 kcal Electronic energy + Delta-G solvation = -28133.946017 eV Core-core repulsion = 23971.330070 eV Total energy + Delta-G solvation = -4162.615947 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.066 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.38071 -39.55896 -38.52209 -37.18688 -36.76178 -35.85855 -34.49965 -33.99963 -32.46411 -31.70872 -29.63695 -28.34810 -26.99763 -25.29863 -23.52540 -22.94734 -21.64158 -21.19405 -19.62367 -19.48170 -18.86584 -18.34742 -17.90220 -17.73228 -17.23317 -16.66046 -15.87509 -15.32542 -15.04133 -14.82678 -14.45126 -14.15487 -14.10468 -13.88971 -13.59307 -13.19362 -12.83632 -12.42965 -12.27106 -12.12304 -11.92205 -11.76192 -11.74311 -11.71061 -11.51798 -11.31388 -11.26866 -11.14277 -10.89199 -10.58130 -10.41714 -10.20520 -9.97102 -9.65499 -9.60637 -9.22424 -7.94410 -7.66459 -7.31963 -4.71668 -0.61841 0.36551 0.68335 0.96563 1.14823 2.48121 2.52256 2.75547 3.00130 3.08507 3.14249 3.19257 3.71373 3.80514 3.98317 4.19153 4.27656 4.29660 4.68385 4.86480 4.93189 5.13258 5.20349 5.35788 5.38107 5.57281 5.82667 5.94439 5.97329 6.06734 6.21719 6.45603 6.60684 6.71104 7.02223 7.16595 7.43656 7.43779 7.50667 7.60255 7.68793 7.83754 8.00374 8.41516 8.55458 9.77060 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.009078 B = 0.004515 C = 0.004006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3083.598572 B = 6199.442137 C = 6988.507318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.782 5.782 2 C 0.040 3.960 3 Si 1.060 2.940 4 H -0.271 1.271 5 H -0.273 1.273 6 H -0.274 1.274 7 C -0.512 4.512 8 H 0.079 0.921 9 C 0.095 3.905 10 C -0.200 4.200 11 C -0.089 4.089 12 C -0.230 4.230 13 C -0.123 4.123 14 C 0.003 3.997 15 N -1.010 6.010 16 S 2.673 3.327 17 O -0.965 6.965 18 O -0.947 6.947 19 C -0.624 4.624 20 C -0.007 4.007 21 C -0.076 4.076 22 C 0.001 3.999 23 N 0.023 4.977 24 O -0.154 6.154 25 O -0.152 6.152 26 C -0.079 4.079 27 C -0.016 4.016 28 H 0.302 0.698 29 H 0.109 0.891 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.133 0.867 33 H 0.423 0.577 34 H 0.165 0.835 35 H 0.161 0.839 36 H 0.161 0.839 37 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.432 -5.418 -1.523 9.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C -0.184 4.184 3 Si 0.883 3.117 4 H -0.196 1.196 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.540 4.540 8 H 0.097 0.903 9 C 0.089 3.911 10 C -0.220 4.220 11 C -0.108 4.108 12 C -0.251 4.251 13 C -0.145 4.145 14 C -0.094 4.094 15 N -0.763 5.763 16 S 2.763 3.237 17 O -0.954 6.954 18 O -0.937 6.937 19 C -0.706 4.706 20 C -0.027 4.027 21 C -0.095 4.095 22 C -0.081 4.081 23 N 0.545 4.455 24 O -0.371 6.371 25 O -0.369 6.369 26 C -0.099 4.099 27 C -0.036 4.036 28 H 0.116 0.884 29 H 0.127 0.873 30 H 0.111 0.889 31 H 0.116 0.884 32 H 0.150 0.850 33 H 0.262 0.738 34 H 0.182 0.818 35 H 0.179 0.821 36 H 0.179 0.821 37 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 7.053 -4.629 -0.406 8.446 hybrid contribution 0.503 -0.924 -0.815 1.331 sum 7.556 -5.553 -1.221 9.457 Atomic orbital electron populations 1.70484 1.08219 1.34574 1.27154 1.27039 0.95607 1.04381 0.91324 0.83688 0.75849 0.73936 0.78212 1.19597 1.19850 1.19906 1.20437 1.03308 0.94120 1.36159 0.90295 1.17546 0.92043 0.91108 0.90436 1.20853 1.02794 0.97610 1.00775 1.20474 0.98460 0.93137 0.98731 1.20215 1.03796 0.96112 1.04931 1.21347 0.97095 0.97241 0.98820 1.17151 0.98966 0.94512 0.98787 1.52170 1.40563 1.47646 1.35934 1.03286 0.72902 0.74428 0.73104 1.93560 1.61246 1.85627 1.55003 1.93541 1.68176 1.45913 1.86069 1.31806 1.08717 1.06619 1.23506 1.21104 0.98227 0.93836 0.89505 1.21191 0.91893 0.96168 1.00275 1.21409 0.96664 1.05798 0.84245 1.43672 1.00467 0.98644 1.02738 1.94541 1.11707 1.39106 1.91709 1.94550 1.70056 1.46186 1.26129 1.21143 1.01101 0.97263 0.90400 1.20979 0.91560 0.93270 0.97790 0.88430 0.87277 0.88872 0.88415 0.84983 0.73815 0.81768 0.82097 0.82146 0.81981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.57 12.32 55.55 0.68 -17.89 16 2 C 0.04 0.90 4.92 -17.33 -0.09 0.82 16 3 Si 1.06 19.37 30.00 -169.99 -5.10 14.27 16 4 H -0.27 -5.02 7.11 56.52 0.40 -4.61 16 5 H -0.27 -4.71 7.11 56.52 0.40 -4.31 16 6 H -0.27 -4.91 7.11 56.52 0.40 -4.51 16 7 C -0.51 -11.54 8.34 -37.89 -0.32 -11.86 16 8 H 0.08 1.68 7.39 -52.49 -0.39 1.29 16 9 C 0.09 2.13 5.31 -106.63 -0.57 1.57 16 10 C -0.20 -4.47 7.92 -39.29 -0.31 -4.78 16 11 C -0.09 -1.79 9.97 -39.98 -0.40 -2.19 16 12 C -0.23 -4.42 10.04 -39.36 -0.39 -4.81 16 13 C -0.12 -2.39 8.46 -39.42 -0.33 -2.72 16 14 C 0.00 0.07 6.26 -83.29 -0.52 -0.46 16 15 N -1.01 -17.55 5.35 32.72 0.17 -17.38 16 16 S 2.67 41.65 5.51 -107.50 -0.59 41.06 16 17 O -0.96 -16.00 17.28 -57.17 -0.99 -16.99 16 18 O -0.95 -16.19 14.25 -57.17 -0.81 -17.00 16 19 C -0.62 -8.76 5.79 -39.58 -0.23 -8.98 16 20 C -0.01 -0.10 9.32 -39.58 -0.37 -0.47 16 21 C -0.08 -0.95 9.56 -39.58 -0.38 -1.33 16 22 C 0.00 0.02 6.85 -79.95 -0.55 -0.53 16 23 N 0.02 0.34 4.45 33.96 0.15 0.49 16 24 O -0.15 -2.24 18.45 -29.46 -0.54 -2.78 16 25 O -0.15 -2.24 18.45 -29.46 -0.54 -2.78 16 26 C -0.08 -0.95 9.56 -39.58 -0.38 -1.33 16 27 C -0.02 -0.20 9.52 -39.58 -0.38 -0.58 16 28 H 0.30 7.34 6.75 -40.82 -0.28 7.06 16 29 H 0.11 2.54 6.52 -52.49 -0.34 2.20 16 30 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 31 H 0.10 1.64 8.06 -52.49 -0.42 1.22 16 32 H 0.13 2.41 5.12 -52.49 -0.27 2.14 16 33 H 0.42 6.96 8.09 -34.47 -0.28 6.68 16 34 H 0.16 2.04 6.94 -52.48 -0.36 1.68 16 35 H 0.16 1.70 7.61 -52.49 -0.40 1.30 16 36 H 0.16 1.55 7.61 -52.48 -0.40 1.15 16 37 H 0.16 1.68 7.62 -52.49 -0.40 1.28 16 LS Contribution 338.95 15.07 5.11 5.11 Total: -1.00 -27.32 338.95 -10.43 -37.75 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: -2.76 Total: 13.81 kcal Atomic # 6 Polarization: -32.45 SS G_CDS: -5.21 Total: -37.66 kcal Atomic # 7 Polarization: -35.79 SS G_CDS: 1.01 Total: -34.78 kcal Atomic # 8 Polarization: -36.67 SS G_CDS: -2.89 Total: -39.56 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.10 Total: 14.27 kcal Atomic # 16 Polarization: 41.65 SS G_CDS: -0.59 Total: 41.06 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -27.32 -10.43 -37.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193355970.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.675 kcal (2) G-P(sol) polarization free energy of solvation -27.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds