Wall clock time and date at job start Wed Apr 1 2020 05:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30874 * 1 3 3 Si 1.86797 * 119.99960 * 2 1 4 4 H 1.48506 * 109.47241 * 359.97438 * 3 2 1 5 5 H 1.48505 * 109.47414 * 119.99917 * 3 2 1 6 6 H 1.48507 * 109.47349 * 239.99913 * 3 2 1 7 7 C 1.39930 * 120.00204 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00157 * 206.06072 * 7 2 1 9 9 C 1.41042 * 119.99656 * 26.06143 * 7 2 1 10 10 C 1.40726 * 120.30697 * 25.50738 * 9 7 2 11 11 C 1.36451 * 119.94755 * 180.02562 * 10 9 7 12 12 C 1.38901 * 120.59986 * 0.02562 * 11 10 9 13 13 C 1.38170 * 120.62635 * 359.97311 * 12 11 10 14 14 C 1.38751 * 120.02302 * 359.72325 * 13 12 11 15 15 N 1.38730 * 120.29450 * 180.27444 * 14 13 12 16 16 S 1.65599 * 119.99677 * 35.53889 * 15 14 13 17 17 O 1.42098 * 106.40286 * 173.60352 * 16 15 14 18 18 O 1.42103 * 106.40405 * 306.51771 * 16 15 14 19 19 C 1.76194 * 107.22071 * 60.06174 * 16 15 14 20 20 C 1.38235 * 120.00357 * 269.72330 * 19 16 15 21 21 C 1.38233 * 120.00515 * 179.76508 * 20 19 16 22 22 C 1.38240 * 119.99643 * 0.48909 * 21 20 19 23 23 N 1.48016 * 120.00063 * 179.77077 * 22 21 20 24 24 O 1.21799 * 120.00326 * 180.02562 * 23 22 21 25 25 O 1.21801 * 120.00082 * 0.02562 * 23 22 21 26 26 C 1.38235 * 119.99754 * 359.78857 * 22 21 20 27 27 C 1.38233 * 120.00533 * 359.95772 * 26 22 21 28 28 H 0.96997 * 119.99719 * 185.90519 * 1 2 3 29 29 H 1.07996 * 120.02577 * 359.97220 * 10 9 7 30 30 H 1.07994 * 119.69850 * 179.97438 * 11 10 9 31 31 H 1.08002 * 119.68821 * 179.97438 * 12 11 10 32 32 H 1.07999 * 119.98617 * 179.97438 * 13 12 11 33 33 H 0.96994 * 119.99983 * 215.53833 * 15 14 13 34 34 H 1.08004 * 119.99495 * 0.02562 * 20 19 16 35 35 H 1.07990 * 120.00464 * 180.26077 * 21 20 19 36 36 H 1.08005 * 119.99529 * 179.97438 * 26 22 21 37 37 H 1.07994 * 120.00306 * 179.97438 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 1.2777 2.7465 -0.0006 5 1 3.0965 1.6965 1.2125 6 1 3.0965 1.6964 -1.2125 7 6 2.0084 -1.2118 0.0005 8 1 3.0061 -1.2592 0.4115 9 6 1.4108 -2.3714 -0.5356 10 6 0.4075 -2.2645 -1.5167 11 6 -0.1661 -3.3911 -2.0300 12 6 0.2303 -4.6485 -1.5927 13 6 1.2130 -4.7817 -0.6306 14 6 1.8182 -3.6535 -0.0955 15 7 2.8094 -3.7809 0.8667 16 16 3.8773 -5.0444 0.7930 17 8 4.8429 -4.8135 1.8096 18 8 3.0942 -6.2279 0.7195 19 6 4.7314 -4.9168 -0.7428 20 6 4.2319 -5.5488 -1.8661 21 6 4.8994 -5.4447 -3.0721 22 6 6.0719 -4.7167 -3.1525 23 7 6.7893 -4.6093 -4.4427 24 8 7.8226 -3.9684 -4.5135 25 8 6.3465 -5.1620 -5.4337 26 6 6.5744 -4.0894 -2.0279 27 6 5.9041 -4.1892 -0.8231 28 1 -0.4849 -0.8356 0.0864 29 1 0.0913 -1.2914 -1.8624 30 1 -0.9359 -3.3044 -2.7824 31 1 -0.2339 -5.5305 -2.0087 32 1 1.5130 -5.7644 -0.2978 33 1 2.8770 -3.1298 1.5825 34 1 3.3179 -6.1206 -1.8024 35 1 4.5070 -5.9350 -3.9507 36 1 7.4906 -3.5210 -2.0907 37 1 6.2970 -3.6995 0.0556 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193355970.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:30:46 Heat of formation + Delta-G solvation = -44.482775 kcal Electronic energy + Delta-G solvation = -28134.570842 eV Core-core repulsion = 23971.330070 eV Total energy + Delta-G solvation = -4163.240773 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.066 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.47311 -40.59472 -40.08185 -38.54288 -37.87607 -37.20317 -36.04887 -35.56047 -33.52787 -32.70390 -31.26328 -29.90735 -28.09898 -26.93792 -24.52944 -24.04019 -23.21716 -22.76302 -20.79232 -20.63084 -19.99277 -19.90438 -19.18273 -18.82849 -18.62335 -18.08479 -17.03182 -16.66461 -16.24622 -16.09275 -15.96548 -15.53415 -15.13572 -15.08621 -14.77628 -14.59146 -14.39271 -13.95025 -13.82054 -13.46127 -13.25554 -13.16549 -12.95664 -12.82123 -12.75708 -12.67231 -12.44584 -12.42503 -12.32557 -12.00604 -11.88964 -11.54565 -11.30522 -11.17245 -10.84401 -10.63171 -9.58237 -9.33195 -8.93171 -6.41196 -1.70805 -0.90496 -0.29736 -0.14180 0.08088 0.87202 0.90216 1.52004 1.62253 1.63679 1.76915 1.93594 2.31186 2.45457 2.66619 2.93672 3.18053 3.24541 3.49081 3.67390 3.75790 4.01597 4.19117 4.33545 4.37221 4.42816 4.44369 4.47862 4.57484 4.89341 4.94132 5.00103 5.10995 5.17897 5.42355 5.59550 5.76323 5.84845 6.03599 6.12518 6.19949 6.30402 6.39391 6.77197 6.92950 8.05246 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.009078 B = 0.004515 C = 0.004006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3083.598572 B = 6199.442137 C = 6988.507318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.008 3.992 3 Si 1.104 2.896 4 H -0.278 1.278 5 H -0.254 1.254 6 H -0.268 1.268 7 C -0.540 4.540 8 H 0.085 0.915 9 C 0.070 3.930 10 C -0.221 4.221 11 C -0.096 4.096 12 C -0.221 4.221 13 C -0.132 4.132 14 C 0.014 3.986 15 N -1.019 6.019 16 S 2.703 3.297 17 O -0.970 6.970 18 O -0.961 6.961 19 C -0.633 4.633 20 C -0.015 4.015 21 C -0.074 4.074 22 C -0.008 4.008 23 N 0.023 4.977 24 O -0.156 6.156 25 O -0.164 6.164 26 C -0.073 4.073 27 C -0.018 4.018 28 H 0.287 0.713 29 H 0.089 0.911 30 H 0.113 0.887 31 H 0.128 0.872 32 H 0.147 0.853 33 H 0.425 0.575 34 H 0.173 0.827 35 H 0.179 0.821 36 H 0.186 0.814 37 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.903 -6.365 -1.685 11.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.210 4.210 3 Si 0.923 3.077 4 H -0.203 1.203 5 H -0.178 1.178 6 H -0.193 1.193 7 C -0.569 4.569 8 H 0.103 0.897 9 C 0.064 3.936 10 C -0.242 4.242 11 C -0.115 4.115 12 C -0.241 4.241 13 C -0.154 4.154 14 C -0.083 4.083 15 N -0.771 5.771 16 S 2.794 3.206 17 O -0.960 6.960 18 O -0.952 6.952 19 C -0.719 4.719 20 C -0.035 4.035 21 C -0.094 4.094 22 C -0.091 4.091 23 N 0.543 4.457 24 O -0.373 6.373 25 O -0.380 6.380 26 C -0.093 4.093 27 C -0.037 4.037 28 H 0.099 0.901 29 H 0.107 0.893 30 H 0.131 0.869 31 H 0.146 0.854 32 H 0.165 0.835 33 H 0.264 0.736 34 H 0.190 0.810 35 H 0.197 0.803 36 H 0.203 0.797 37 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 8.483 -5.584 -0.559 10.171 hybrid contribution 0.141 -0.862 -0.791 1.178 sum 8.624 -6.445 -1.350 10.851 Atomic orbital electron populations 1.70584 1.09054 1.33519 1.30464 1.28156 0.95599 1.07148 0.90070 0.83141 0.74960 0.70558 0.79082 1.20266 1.17819 1.19325 1.20580 1.03831 0.94693 1.37776 0.89698 1.17815 0.92643 0.92201 0.90955 1.20837 1.04035 0.97547 1.01755 1.20719 0.98762 0.92950 0.99082 1.20604 1.02881 0.96684 1.03940 1.21591 0.97178 0.97572 0.99015 1.17224 0.99052 0.94002 0.98061 1.52246 1.41359 1.47687 1.35784 1.01987 0.72333 0.73173 0.73123 1.93560 1.61130 1.85606 1.55720 1.93513 1.68825 1.46290 1.86527 1.31510 1.09602 1.08273 1.22563 1.21247 0.98677 0.94007 0.89523 1.21383 0.91554 0.95828 1.00640 1.21611 0.97003 1.06399 0.84040 1.43813 1.00427 0.98421 1.03018 1.94533 1.11895 1.39058 1.91841 1.94549 1.70204 1.46582 1.26621 1.21437 1.01654 0.96586 0.89606 1.21286 0.90930 0.92717 0.98802 0.90078 0.89306 0.86916 0.85449 0.83537 0.73631 0.81006 0.80325 0.79720 0.79901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.18 12.32 21.83 0.27 -39.91 16 2 C 0.01 0.37 4.92 85.25 0.42 0.79 16 3 Si 1.10 39.28 30.00 68.60 2.06 41.34 16 4 H -0.28 -10.05 7.11 99.48 0.71 -9.34 16 5 H -0.25 -8.16 7.11 99.48 0.71 -7.45 16 6 H -0.27 -9.20 7.11 99.48 0.71 -8.49 16 7 C -0.54 -24.76 8.34 23.37 0.19 -24.57 16 8 H 0.08 3.62 7.39 -2.91 -0.02 3.60 16 9 C 0.07 3.17 5.31 -21.17 -0.11 3.06 16 10 C -0.22 -10.10 7.92 22.46 0.18 -9.92 16 11 C -0.10 -3.81 9.97 22.01 0.22 -3.59 16 12 C -0.22 -8.05 10.04 22.41 0.22 -7.82 16 13 C -0.13 -4.89 8.46 22.38 0.19 -4.71 16 14 C 0.01 0.54 6.26 38.99 0.24 0.79 16 15 N -1.02 -34.42 5.35 -50.39 -0.27 -34.69 16 16 S 2.70 79.26 5.51 -56.49 -0.31 78.95 16 17 O -0.97 -30.18 17.28 -128.00 -2.21 -32.39 16 18 O -0.96 -30.95 14.25 -128.00 -1.82 -32.78 16 19 C -0.63 -16.38 5.79 22.27 0.13 -16.26 16 20 C -0.01 -0.37 9.32 22.27 0.21 -0.16 16 21 C -0.07 -1.71 9.56 22.27 0.21 -1.50 16 22 C -0.01 -0.20 6.85 36.38 0.25 0.05 16 23 N 0.02 0.63 4.45 -46.46 -0.21 0.42 16 24 O -0.16 -4.23 18.45 18.89 0.35 -3.88 16 25 O -0.16 -4.60 18.45 18.89 0.35 -4.25 16 26 C -0.07 -1.56 9.56 22.27 0.21 -1.35 16 27 C -0.02 -0.40 9.52 22.27 0.21 -0.18 16 28 H 0.29 14.69 6.75 -92.71 -0.63 14.07 16 29 H 0.09 4.34 6.52 -2.91 -0.02 4.32 16 30 H 0.11 3.92 8.06 -2.91 -0.02 3.90 16 31 H 0.13 3.85 8.06 -2.91 -0.02 3.83 16 32 H 0.15 5.00 5.12 -2.91 -0.01 4.98 16 33 H 0.43 13.78 8.09 -96.75 -0.78 13.00 16 34 H 0.17 3.88 6.94 -2.91 -0.02 3.86 16 35 H 0.18 3.36 7.61 -2.92 -0.02 3.34 16 36 H 0.19 2.96 7.61 -2.91 -0.02 2.94 16 37 H 0.18 3.24 7.62 -2.91 -0.02 3.22 16 Total: -1.00 -58.27 338.95 1.50 -56.77 By element: Atomic # 1 Polarization: 35.26 SS G_CDS: 0.52 Total: 35.78 kcal Atomic # 6 Polarization: -68.13 SS G_CDS: 2.78 Total: -65.35 kcal Atomic # 7 Polarization: -73.97 SS G_CDS: -0.21 Total: -74.17 kcal Atomic # 8 Polarization: -69.96 SS G_CDS: -3.34 Total: -73.30 kcal Atomic # 14 Polarization: 39.28 SS G_CDS: 2.06 Total: 41.34 kcal Atomic # 16 Polarization: 79.26 SS G_CDS: -0.31 Total: 78.95 kcal Total: -58.27 1.50 -56.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193355970.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.283 kcal (2) G-P(sol) polarization free energy of solvation -58.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds