Wall clock time and date at job start Wed Apr 1 2020 05:30:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30878 * 1 3 3 Si 1.86801 * 120.00230 * 2 1 4 4 H 1.48500 * 109.47063 * 239.99775 * 3 2 1 5 5 H 1.48496 * 109.46908 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46753 * 119.99744 * 3 2 1 7 7 C 1.39932 * 119.99524 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99425 * 176.10000 * 7 2 1 9 9 C 1.41037 * 120.00129 * 356.09833 * 7 2 1 10 10 C 1.40728 * 120.30828 * 34.57490 * 9 7 2 11 11 C 1.36446 * 119.95285 * 180.02562 * 10 9 7 12 12 C 1.38909 * 120.59676 * 359.74026 * 11 10 9 13 13 C 1.38164 * 120.62136 * 0.51870 * 12 11 10 14 14 C 1.38750 * 120.03030 * 359.48589 * 13 12 11 15 15 N 1.38729 * 120.29694 * 180.27992 * 14 13 12 16 16 S 1.65601 * 119.99849 * 35.65173 * 15 14 13 17 17 O 1.42102 * 106.39907 * 173.48640 * 16 15 14 18 18 O 1.42102 * 106.40316 * 306.40490 * 16 15 14 19 19 C 1.76196 * 107.21807 * 59.95026 * 16 15 14 20 20 C 1.38257 * 119.99888 * 269.72149 * 19 16 15 21 21 C 1.38215 * 120.00200 * 179.78613 * 20 19 16 22 22 C 1.38259 * 119.99614 * 0.47012 * 21 20 19 23 23 C 1.38215 * 120.00157 * 359.76236 * 22 21 20 24 24 N 1.48013 * 119.99898 * 179.97438 * 23 22 21 25 25 O 1.21800 * 119.99846 * 180.02562 * 24 23 22 26 26 O 1.21796 * 120.00416 * 0.02562 * 24 23 22 27 27 C 1.38206 * 120.00157 * 89.99761 * 19 16 15 28 28 H 0.97003 * 120.00209 * 359.97438 * 1 2 3 29 29 H 1.08003 * 120.02408 * 359.97438 * 10 9 7 30 30 H 1.07997 * 119.70456 * 179.97438 * 11 10 9 31 31 H 1.07995 * 119.68672 * 180.26365 * 12 11 10 32 32 H 1.08001 * 119.98358 * 179.76481 * 13 12 11 33 33 H 0.97001 * 119.99983 * 215.65834 * 15 14 13 34 34 H 1.08004 * 119.99686 * 0.02562 * 20 19 16 35 35 H 1.07998 * 120.00011 * 180.25396 * 21 20 19 36 36 H 1.08003 * 119.99650 * 179.78713 * 22 21 20 37 37 H 1.07997 * 120.00137 * 359.97438 * 27 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.0966 1.6963 -1.2125 5 1 1.2779 2.7464 0.0006 6 1 3.0965 1.6963 1.2126 7 6 2.0083 -1.2119 0.0005 8 1 3.0865 -1.2130 -0.0631 9 6 1.3055 -2.4318 0.0842 10 6 0.0457 -2.5691 -0.5277 11 6 -0.6281 -3.7524 -0.4418 12 6 -0.0798 -4.8303 0.2416 13 6 1.1530 -4.7206 0.8558 14 6 1.8607 -3.5293 0.7848 15 7 3.1015 -3.4150 1.3946 16 16 4.1321 -4.7109 1.4240 17 8 5.3557 -4.2380 1.9705 18 8 3.3994 -5.7937 1.9806 19 6 4.4701 -5.1466 -0.2494 20 6 3.6690 -6.0671 -0.8993 21 6 3.9315 -6.4057 -2.2134 22 6 5.0010 -5.8311 -2.8749 23 6 5.8047 -4.9145 -2.2236 24 7 6.9500 -4.2998 -2.9316 25 8 7.6586 -3.4924 -2.3575 26 8 7.1840 -4.6013 -4.0883 27 6 5.5395 -4.5726 -0.9105 28 1 -0.4850 0.8400 0.0004 29 1 -0.3879 -1.7380 -1.0643 30 1 -1.5949 -3.8531 -0.9125 31 1 -0.6240 -5.7614 0.2968 32 1 1.5679 -5.5641 1.3877 33 1 3.3654 -2.5760 1.8037 34 1 2.8358 -6.5187 -0.3814 35 1 3.3032 -7.1216 -2.7224 36 1 5.2081 -6.0982 -3.9007 37 1 6.1677 -3.8566 -0.4015 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193356371.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:30:51 Heat of formation + Delta-G solvation = -24.186273 kcal Electronic energy + Delta-G solvation = -28261.042966 eV Core-core repulsion = 24098.682316 eV Total energy + Delta-G solvation = -4162.360650 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.066 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.26379 -39.53921 -38.33643 -37.09875 -36.64128 -35.78862 -34.22641 -33.79398 -32.32089 -31.84454 -29.82842 -28.23360 -26.72527 -25.38129 -23.84781 -22.74121 -21.57135 -20.97011 -20.14549 -18.85987 -18.67939 -17.75140 -17.61763 -17.14340 -17.04040 -16.75855 -16.30871 -15.84575 -15.23183 -14.78516 -14.54753 -14.41930 -13.72090 -13.47924 -13.01113 -12.88038 -12.78972 -12.53619 -12.39681 -12.01098 -11.93060 -11.77161 -11.64827 -11.37064 -11.34025 -11.30332 -11.20564 -11.14696 -11.03825 -10.64233 -10.28347 -10.09548 -9.92779 -9.78537 -9.54011 -9.39179 -7.62474 -7.30588 -6.84866 -4.65044 -0.31661 0.25340 0.52971 1.18233 1.27128 2.55661 2.69379 2.79579 2.96612 2.98677 3.05408 3.20363 3.77061 3.79428 4.05781 4.24423 4.41946 4.45156 4.55184 4.67277 4.95968 5.13634 5.29018 5.33252 5.54839 5.61694 5.90969 5.94525 6.10782 6.25038 6.30632 6.55201 6.78809 6.89328 7.00936 7.22410 7.39451 7.55491 7.68681 7.81848 7.86957 7.99948 8.37215 8.62389 8.67911 10.02506 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.009100 B = 0.004901 C = 0.004109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3076.297050 B = 5711.838283 C = 6812.776161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.074 3.926 3 Si 0.912 3.088 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.461 4.461 8 H 0.077 0.923 9 C 0.104 3.896 10 C -0.133 4.133 11 C -0.117 4.117 12 C -0.206 4.206 13 C -0.146 4.146 14 C 0.020 3.980 15 N -1.013 6.013 16 S 2.679 3.321 17 O -0.964 6.964 18 O -0.947 6.947 19 C -0.668 4.668 20 C 0.040 3.960 21 C -0.135 4.135 22 C -0.009 4.009 23 C -0.068 4.068 24 N 0.032 4.968 25 O -0.155 6.155 26 O -0.162 6.162 27 C 0.048 3.952 28 H 0.282 0.718 29 H 0.132 0.868 30 H 0.092 0.908 31 H 0.096 0.904 32 H 0.131 0.869 33 H 0.424 0.576 34 H 0.162 0.838 35 H 0.157 0.843 36 H 0.159 0.841 37 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.144 -8.513 -3.267 10.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.144 4.144 3 Si 0.737 3.263 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.187 1.187 7 C -0.492 4.492 8 H 0.096 0.904 9 C 0.099 3.901 10 C -0.154 4.154 11 C -0.137 4.137 12 C -0.226 4.226 13 C -0.168 4.168 14 C -0.077 4.077 15 N -0.767 5.767 16 S 2.769 3.231 17 O -0.954 6.954 18 O -0.937 6.937 19 C -0.751 4.751 20 C 0.021 3.979 21 C -0.154 4.154 22 C -0.028 4.028 23 C -0.152 4.152 24 N 0.552 4.448 25 O -0.372 6.372 26 O -0.377 6.377 27 C 0.028 3.972 28 H 0.093 0.907 29 H 0.150 0.850 30 H 0.110 0.890 31 H 0.114 0.886 32 H 0.149 0.851 33 H 0.263 0.737 34 H 0.179 0.821 35 H 0.175 0.825 36 H 0.176 0.824 37 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 3.801 -9.237 -2.260 10.241 hybrid contribution 0.563 1.523 -0.846 1.831 sum 4.364 -7.714 -3.106 9.392 Atomic orbital electron populations 1.69734 1.07334 1.29374 1.36214 1.25893 0.94964 1.01317 0.92190 0.86275 0.79953 0.79942 0.80160 1.18860 1.20166 1.18718 1.19353 0.94778 0.90035 1.45055 0.90444 1.17551 0.92933 0.91440 0.88218 1.21303 0.96300 0.96504 1.01274 1.20613 0.98554 0.94208 1.00283 1.20319 0.96911 0.98433 1.06960 1.21295 0.96024 0.97319 1.02122 1.17417 0.87540 0.98320 1.04422 1.52223 1.25267 1.30686 1.68484 1.03007 0.72752 0.73896 0.73495 1.93571 1.44491 1.80711 1.76615 1.93539 1.71490 1.54111 1.74592 1.31471 1.04834 1.10039 1.28763 1.21548 0.94006 0.88412 0.93910 1.21382 0.97474 1.01725 0.94867 1.21322 0.90931 0.89705 1.00864 1.21150 0.93873 1.05267 0.94916 1.43517 1.01159 0.99353 1.00818 1.94574 1.45918 1.27978 1.68706 1.94517 1.76094 1.65972 1.01159 1.20737 0.92720 0.92981 0.90794 0.90654 0.85011 0.89025 0.88602 0.85108 0.73688 0.82070 0.82545 0.82384 0.81505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -18.87 10.61 55.55 0.59 -18.28 16 2 C 0.07 1.68 5.42 -17.32 -0.09 1.59 16 3 Si 0.91 17.56 29.56 -169.99 -5.03 12.54 16 4 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 5 H -0.28 -5.25 7.11 56.52 0.40 -4.84 16 6 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 7 C -0.46 -10.74 8.24 -37.89 -0.31 -11.05 16 8 H 0.08 1.71 7.65 -52.48 -0.40 1.31 16 9 C 0.10 2.41 5.57 -106.64 -0.59 1.81 16 10 C -0.13 -3.05 8.61 -39.29 -0.34 -3.39 16 11 C -0.12 -2.38 9.97 -39.98 -0.40 -2.78 16 12 C -0.21 -3.93 10.04 -39.36 -0.40 -4.33 16 13 C -0.15 -2.83 8.45 -39.42 -0.33 -3.16 16 14 C 0.02 0.41 6.25 -83.29 -0.52 -0.11 16 15 N -1.01 -18.18 5.39 32.72 0.18 -18.00 16 16 S 2.68 43.25 5.51 -107.50 -0.59 42.66 16 17 O -0.96 -16.94 17.28 -57.17 -0.99 -17.92 16 18 O -0.95 -16.32 14.26 -57.17 -0.82 -17.13 16 19 C -0.67 -9.65 5.79 -39.59 -0.23 -9.88 16 20 C 0.04 0.50 9.32 -39.58 -0.37 0.13 16 21 C -0.14 -1.37 10.05 -39.58 -0.40 -1.77 16 22 C -0.01 -0.10 9.56 -39.58 -0.38 -0.48 16 23 C -0.07 -0.95 6.85 -79.95 -0.55 -1.50 16 24 N 0.03 0.48 4.45 33.96 0.15 0.64 16 25 O -0.15 -2.53 18.45 -29.46 -0.54 -3.08 16 26 O -0.16 -2.44 18.45 -29.46 -0.54 -2.98 16 27 C 0.05 0.70 9.03 -39.58 -0.36 0.34 16 28 H 0.28 6.16 8.30 -40.82 -0.34 5.82 16 29 H 0.13 3.17 6.14 -52.48 -0.32 2.84 16 30 H 0.09 1.66 8.06 -52.49 -0.42 1.23 16 31 H 0.10 1.58 8.06 -52.49 -0.42 1.16 16 32 H 0.13 2.37 5.13 -52.49 -0.27 2.10 16 33 H 0.42 7.26 8.28 -34.47 -0.29 6.97 16 34 H 0.16 1.85 6.94 -52.48 -0.36 1.48 16 35 H 0.16 1.02 8.06 -52.49 -0.42 0.60 16 36 H 0.16 1.36 7.61 -52.48 -0.40 0.96 16 37 H 0.17 2.35 7.17 -52.49 -0.38 1.97 16 LS Contribution 339.80 15.07 5.12 5.12 Total: -1.00 -28.17 339.80 -10.56 -38.73 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: -2.82 Total: 12.28 kcal Atomic # 6 Polarization: -29.30 SS G_CDS: -5.26 Total: -34.57 kcal Atomic # 7 Polarization: -36.56 SS G_CDS: 0.92 Total: -35.64 kcal Atomic # 8 Polarization: -38.23 SS G_CDS: -2.89 Total: -41.12 kcal Atomic # 14 Polarization: 17.56 SS G_CDS: -5.03 Total: 12.54 kcal Atomic # 16 Polarization: 43.25 SS G_CDS: -0.59 Total: 42.66 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -28.17 -10.56 -38.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193356371.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.543 kcal (2) G-P(sol) polarization free energy of solvation -28.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds