Wall clock time and date at job start Wed Apr 1 2020 05:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30878 * 1 3 3 Si 1.86801 * 120.00230 * 2 1 4 4 H 1.48500 * 109.47063 * 239.99775 * 3 2 1 5 5 H 1.48496 * 109.46908 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46753 * 119.99744 * 3 2 1 7 7 C 1.39932 * 119.99524 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99425 * 176.10000 * 7 2 1 9 9 C 1.41037 * 120.00129 * 356.09833 * 7 2 1 10 10 C 1.40728 * 120.30828 * 34.57490 * 9 7 2 11 11 C 1.36446 * 119.95285 * 180.02562 * 10 9 7 12 12 C 1.38909 * 120.59676 * 359.74026 * 11 10 9 13 13 C 1.38164 * 120.62136 * 0.51870 * 12 11 10 14 14 C 1.38750 * 120.03030 * 359.48589 * 13 12 11 15 15 N 1.38729 * 120.29694 * 180.27992 * 14 13 12 16 16 S 1.65601 * 119.99849 * 35.65173 * 15 14 13 17 17 O 1.42102 * 106.39907 * 173.48640 * 16 15 14 18 18 O 1.42102 * 106.40316 * 306.40490 * 16 15 14 19 19 C 1.76196 * 107.21807 * 59.95026 * 16 15 14 20 20 C 1.38257 * 119.99888 * 269.72149 * 19 16 15 21 21 C 1.38215 * 120.00200 * 179.78613 * 20 19 16 22 22 C 1.38259 * 119.99614 * 0.47012 * 21 20 19 23 23 C 1.38215 * 120.00157 * 359.76236 * 22 21 20 24 24 N 1.48013 * 119.99898 * 179.97438 * 23 22 21 25 25 O 1.21800 * 119.99846 * 180.02562 * 24 23 22 26 26 O 1.21796 * 120.00416 * 0.02562 * 24 23 22 27 27 C 1.38206 * 120.00157 * 89.99761 * 19 16 15 28 28 H 0.97003 * 120.00209 * 359.97438 * 1 2 3 29 29 H 1.08003 * 120.02408 * 359.97438 * 10 9 7 30 30 H 1.07997 * 119.70456 * 179.97438 * 11 10 9 31 31 H 1.07995 * 119.68672 * 180.26365 * 12 11 10 32 32 H 1.08001 * 119.98358 * 179.76481 * 13 12 11 33 33 H 0.97001 * 119.99983 * 215.65834 * 15 14 13 34 34 H 1.08004 * 119.99686 * 0.02562 * 20 19 16 35 35 H 1.07998 * 120.00011 * 180.25396 * 21 20 19 36 36 H 1.08003 * 119.99650 * 179.78713 * 22 21 20 37 37 H 1.07997 * 120.00137 * 359.97438 * 27 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.0966 1.6963 -1.2125 5 1 1.2779 2.7464 0.0006 6 1 3.0965 1.6963 1.2126 7 6 2.0083 -1.2119 0.0005 8 1 3.0865 -1.2130 -0.0631 9 6 1.3055 -2.4318 0.0842 10 6 0.0457 -2.5691 -0.5277 11 6 -0.6281 -3.7524 -0.4418 12 6 -0.0798 -4.8303 0.2416 13 6 1.1530 -4.7206 0.8558 14 6 1.8607 -3.5293 0.7848 15 7 3.1015 -3.4150 1.3946 16 16 4.1321 -4.7109 1.4240 17 8 5.3557 -4.2380 1.9705 18 8 3.3994 -5.7937 1.9806 19 6 4.4701 -5.1466 -0.2494 20 6 3.6690 -6.0671 -0.8993 21 6 3.9315 -6.4057 -2.2134 22 6 5.0010 -5.8311 -2.8749 23 6 5.8047 -4.9145 -2.2236 24 7 6.9500 -4.2998 -2.9316 25 8 7.6586 -3.4924 -2.3575 26 8 7.1840 -4.6013 -4.0883 27 6 5.5395 -4.5726 -0.9105 28 1 -0.4850 0.8400 0.0004 29 1 -0.3879 -1.7380 -1.0643 30 1 -1.5949 -3.8531 -0.9125 31 1 -0.6240 -5.7614 0.2968 32 1 1.5679 -5.5641 1.3877 33 1 3.3654 -2.5760 1.8037 34 1 2.8358 -6.5187 -0.3814 35 1 3.3032 -7.1216 -2.7224 36 1 5.2081 -6.0982 -3.9007 37 1 6.1677 -3.8566 -0.4015 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193356371.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:30:50 Heat of formation + Delta-G solvation = -39.884182 kcal Electronic energy + Delta-G solvation = -28261.723679 eV Core-core repulsion = 24098.682316 eV Total energy + Delta-G solvation = -4163.041363 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.066 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.41941 -40.55675 -39.90347 -38.49857 -37.82800 -37.17651 -35.76916 -35.41433 -33.36742 -32.82958 -31.47460 -29.80366 -27.84545 -27.04299 -24.88955 -23.79947 -23.15757 -22.54473 -21.30958 -20.13876 -19.89522 -19.33385 -18.79125 -18.54413 -18.36933 -18.02664 -17.45551 -17.06986 -16.76049 -16.11458 -15.97299 -15.38417 -15.21425 -14.62612 -14.54283 -14.41737 -14.01391 -13.81094 -13.59773 -13.45145 -13.36341 -13.26657 -12.90125 -12.88482 -12.85274 -12.70589 -12.48101 -12.42443 -12.26484 -12.18228 -11.78827 -11.55827 -11.16480 -11.11831 -11.03123 -10.73765 -9.26324 -8.90976 -8.50652 -6.37995 -1.40518 -0.94304 -0.61927 0.09786 0.17247 0.95264 1.06964 1.38232 1.45523 1.50123 1.69682 1.98657 2.18962 2.47951 2.78045 3.00209 3.21298 3.40958 3.58010 3.62718 3.68847 3.87302 4.24133 4.35736 4.42407 4.58853 4.61286 4.67960 4.71786 4.96640 5.04899 5.15791 5.26103 5.27597 5.37226 5.63862 5.78818 6.11372 6.18370 6.25768 6.34894 6.34962 6.71726 6.93017 7.02154 8.37206 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.009100 B = 0.004901 C = 0.004109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3076.297050 B = 5711.838283 C = 6812.776161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.037 3.963 3 Si 0.968 3.032 4 H -0.266 1.266 5 H -0.271 1.271 6 H -0.261 1.261 7 C -0.490 4.490 8 H 0.075 0.925 9 C 0.073 3.927 10 C -0.157 4.157 11 C -0.122 4.122 12 C -0.192 4.192 13 C -0.152 4.152 14 C 0.029 3.971 15 N -1.024 6.024 16 S 2.704 3.296 17 O -0.981 6.981 18 O -0.956 6.956 19 C -0.678 4.678 20 C 0.032 3.968 21 C -0.117 4.117 22 C 0.002 3.998 23 C -0.083 4.083 24 N 0.032 4.968 25 O -0.203 6.203 26 O -0.139 6.139 27 C 0.032 3.968 28 H 0.284 0.716 29 H 0.111 0.889 30 H 0.113 0.887 31 H 0.131 0.869 32 H 0.148 0.852 33 H 0.424 0.576 34 H 0.175 0.825 35 H 0.205 0.795 36 H 0.191 0.809 37 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.668 -11.097 -4.350 12.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C -0.177 4.177 3 Si 0.791 3.209 4 H -0.191 1.191 5 H -0.196 1.196 6 H -0.185 1.185 7 C -0.521 4.521 8 H 0.093 0.907 9 C 0.067 3.933 10 C -0.178 4.178 11 C -0.141 4.141 12 C -0.212 4.212 13 C -0.173 4.173 14 C -0.068 4.068 15 N -0.775 5.775 16 S 2.795 3.205 17 O -0.971 6.971 18 O -0.946 6.946 19 C -0.765 4.765 20 C 0.013 3.987 21 C -0.135 4.135 22 C -0.017 4.017 23 C -0.167 4.167 24 N 0.549 4.451 25 O -0.408 6.408 26 O -0.363 6.363 27 C 0.011 3.989 28 H 0.095 0.905 29 H 0.129 0.871 30 H 0.131 0.869 31 H 0.149 0.851 32 H 0.165 0.835 33 H 0.262 0.738 34 H 0.193 0.807 35 H 0.222 0.778 36 H 0.208 0.792 37 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 3.330 -11.748 -3.235 12.632 hybrid contribution 0.716 2.031 -0.595 2.234 sum 4.046 -9.717 -3.830 11.201 Atomic orbital electron populations 1.69812 1.08297 1.29914 1.38021 1.26532 0.95582 1.03733 0.91850 0.85436 0.78785 0.76891 0.79826 1.19098 1.19574 1.18544 1.19515 0.94818 0.90927 1.46844 0.90651 1.17799 0.93631 0.92342 0.89500 1.21256 0.97055 0.97139 1.02315 1.20852 0.99288 0.93605 1.00354 1.20721 0.96501 0.99189 1.04801 1.21543 0.96227 0.97241 1.02313 1.17509 0.88220 0.97955 1.03080 1.52326 1.25424 1.31082 1.68695 1.01863 0.71890 0.72956 0.73755 1.93555 1.44892 1.81054 1.77583 1.93511 1.71673 1.53961 1.75494 1.31023 1.06019 1.11863 1.27557 1.21912 0.93851 0.87708 0.95190 1.21915 0.96854 1.01142 0.93610 1.21831 0.89918 0.87851 1.02122 1.21337 0.94021 1.06409 0.94892 1.43738 1.01420 0.99158 1.00816 1.94588 1.47387 1.29792 1.69080 1.94475 1.75706 1.64953 1.01167 1.20724 0.93092 0.93453 0.91581 0.90532 0.87139 0.86903 0.85080 0.83512 0.73759 0.80733 0.77791 0.79219 0.82374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -40.74 10.61 21.83 0.23 -40.51 16 2 C 0.04 1.72 5.42 85.25 0.46 2.18 16 3 Si 0.97 37.07 29.56 68.60 2.03 39.10 16 4 H -0.27 -10.16 7.11 99.48 0.71 -9.45 16 5 H -0.27 -10.00 7.11 99.48 0.71 -9.29 16 6 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 7 C -0.49 -23.62 8.24 23.37 0.19 -23.42 16 8 H 0.08 3.49 7.65 -2.91 -0.02 3.47 16 9 C 0.07 3.41 5.57 -21.17 -0.12 3.29 16 10 C -0.16 -7.27 8.61 22.46 0.19 -7.08 16 11 C -0.12 -4.76 9.97 22.01 0.22 -4.54 16 12 C -0.19 -6.74 10.04 22.41 0.22 -6.52 16 13 C -0.15 -5.54 8.45 22.37 0.19 -5.35 16 14 C 0.03 1.19 6.25 38.99 0.24 1.43 16 15 N -1.02 -36.87 5.39 -50.39 -0.27 -37.15 16 16 S 2.70 85.67 5.51 -56.49 -0.31 85.36 16 17 O -0.98 -34.70 17.28 -128.00 -2.21 -36.91 16 18 O -0.96 -31.32 14.26 -128.00 -1.82 -33.14 16 19 C -0.68 -18.70 5.79 22.27 0.13 -18.58 16 20 C 0.03 0.71 9.32 22.27 0.21 0.91 16 21 C -0.12 -1.81 10.05 22.27 0.22 -1.59 16 22 C 0.00 0.03 9.56 22.27 0.21 0.24 16 23 C -0.08 -2.18 6.85 36.38 0.25 -1.93 16 24 N 0.03 0.95 4.45 -46.47 -0.21 0.74 16 25 O -0.20 -6.83 18.45 18.89 0.35 -6.48 16 26 O -0.14 -3.94 18.45 18.89 0.35 -3.59 16 27 C 0.03 0.92 9.03 22.27 0.20 1.12 16 28 H 0.28 12.86 8.30 -92.71 -0.77 12.09 16 29 H 0.11 5.53 6.14 -2.91 -0.02 5.51 16 30 H 0.11 3.84 8.06 -2.91 -0.02 3.82 16 31 H 0.13 3.68 8.06 -2.91 -0.02 3.66 16 32 H 0.15 4.88 5.13 -2.91 -0.01 4.87 16 33 H 0.42 15.00 8.28 -96.74 -0.80 14.20 16 34 H 0.18 3.31 6.94 -2.91 -0.02 3.29 16 35 H 0.21 1.26 8.06 -2.91 -0.02 1.24 16 36 H 0.19 2.28 7.61 -2.91 -0.02 2.26 16 37 H 0.16 4.68 7.17 -2.91 -0.02 4.66 16 Total: -1.00 -62.51 339.80 1.32 -61.18 By element: Atomic # 1 Polarization: 30.86 SS G_CDS: 0.36 Total: 31.22 kcal Atomic # 6 Polarization: -62.65 SS G_CDS: 2.83 Total: -59.82 kcal Atomic # 7 Polarization: -76.67 SS G_CDS: -0.25 Total: -76.92 kcal Atomic # 8 Polarization: -76.78 SS G_CDS: -3.34 Total: -80.12 kcal Atomic # 14 Polarization: 37.07 SS G_CDS: 2.03 Total: 39.10 kcal Atomic # 16 Polarization: 85.67 SS G_CDS: -0.31 Total: 85.36 kcal Total: -62.51 1.32 -61.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193356371.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.300 kcal (2) G-P(sol) polarization free energy of solvation -62.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds