Wall clock time and date at job start Wed Apr 1 2020 05:30:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30876 * 1 3 3 Si 1.86802 * 120.00186 * 2 1 4 4 H 1.48505 * 109.47184 * 267.48725 * 3 2 1 5 5 H 1.48503 * 109.46730 * 27.48649 * 3 2 1 6 6 H 1.48496 * 109.47039 * 147.48499 * 3 2 1 7 7 C 1.39925 * 120.00186 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99768 * 347.02774 * 7 2 1 9 9 C 1.41041 * 120.00447 * 167.03512 * 7 2 1 10 10 C 1.40732 * 120.30617 * 327.15650 * 9 7 2 11 11 C 1.36443 * 119.95372 * 180.28269 * 10 9 7 12 12 C 1.38896 * 120.59714 * 359.71195 * 11 10 9 13 13 C 1.38175 * 120.62680 * 0.02562 * 12 11 10 14 14 C 1.38746 * 120.02293 * 359.97438 * 13 12 11 15 15 N 1.38735 * 120.29649 * 180.02562 * 14 13 12 16 16 S 1.65601 * 119.99524 * 36.52908 * 15 14 13 17 17 O 1.42097 * 106.40411 * 178.69368 * 16 15 14 18 18 O 1.42102 * 106.40004 * 45.77339 * 16 15 14 19 19 C 1.76202 * 107.22193 * 292.23653 * 16 15 14 20 20 C 1.38253 * 120.00254 * 118.32463 * 19 16 15 21 21 C 1.38209 * 119.99879 * 179.97438 * 20 19 16 22 22 C 1.38257 * 120.00374 * 359.75236 * 21 20 19 23 23 C 1.38217 * 119.99682 * 0.52304 * 22 21 20 24 24 C 1.38217 * 119.99535 * 298.34965 * 19 16 15 25 25 N 1.48017 * 120.00215 * 359.97438 * 24 19 16 26 26 O 1.21793 * 119.99979 * 186.95274 * 25 24 19 27 27 O 1.21807 * 119.99977 * 6.95643 * 25 24 19 28 28 H 0.96998 * 120.00113 * 359.97438 * 1 2 3 29 29 H 1.08001 * 120.02382 * 359.97438 * 10 9 7 30 30 H 1.07998 * 119.70518 * 179.74428 * 11 10 9 31 31 H 1.08007 * 119.69013 * 180.02562 * 12 11 10 32 32 H 1.08003 * 119.98500 * 179.97438 * 13 12 11 33 33 H 0.96992 * 120.00614 * 216.53628 * 15 14 13 34 34 H 1.08005 * 119.99740 * 359.97438 * 20 19 16 35 35 H 1.07998 * 119.99679 * 179.97438 * 21 20 19 36 36 H 1.07994 * 120.00633 * 180.27359 * 22 21 20 37 37 H 1.07992 * 119.99808 * 179.74346 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.5435 2.0157 -1.3988 5 1 1.4146 2.6674 0.6462 6 1 3.5127 1.4560 0.7525 7 6 2.0084 -1.2118 -0.0005 8 1 1.4891 -2.1353 0.2090 9 6 3.3919 -1.2273 -0.2746 10 6 3.9492 -0.2944 -1.1688 11 6 5.2876 -0.3196 -1.4331 12 6 6.1113 -1.2562 -0.8221 13 6 5.5908 -2.1799 0.0639 14 6 4.2335 -2.1776 0.3515 15 7 3.7049 -3.1021 1.2407 16 16 4.5763 -3.5629 2.5714 17 8 3.7612 -4.4811 3.2866 18 8 5.0917 -2.3699 3.1462 19 6 5.9669 -4.4776 1.9932 20 6 7.2475 -4.0203 2.2429 21 6 8.3382 -4.7381 1.7899 22 6 8.1488 -5.9162 1.0914 23 6 6.8685 -6.3704 0.8368 24 6 5.7774 -5.6521 1.2896 25 7 4.4063 -6.1417 1.0223 26 8 4.2387 -7.2364 0.5154 27 8 3.4458 -5.4498 1.3092 28 1 -0.4850 0.8400 0.0004 29 1 3.3172 0.4378 -1.6494 30 1 5.7103 0.3956 -2.1232 31 1 7.1688 -1.2627 -1.0417 32 1 6.2408 -2.9039 0.5328 33 1 2.8251 -3.4787 1.0829 34 1 7.3955 -3.1021 2.7921 35 1 9.3385 -4.3807 1.9846 36 1 9.0011 -6.4794 0.7412 37 1 6.7205 -7.2884 0.2877 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193357295.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:30:54 Heat of formation + Delta-G solvation = 0.024816 kcal Electronic energy + Delta-G solvation = -29291.034737 eV Core-core repulsion = 25129.723958 eV Total energy + Delta-G solvation = -4161.310779 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.066 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.37247 -39.72236 -38.43042 -37.19713 -36.45928 -35.61278 -34.16751 -33.68117 -32.45713 -32.05661 -30.54134 -28.32248 -26.84185 -25.12343 -23.94643 -22.88048 -22.00363 -20.76019 -19.98792 -19.04777 -18.80514 -17.76314 -17.68861 -17.49681 -17.07488 -16.83641 -15.90304 -15.76351 -15.19904 -14.90730 -14.63916 -14.40630 -13.92834 -13.61454 -13.34703 -13.12800 -12.68863 -12.46491 -12.34105 -12.06584 -11.87347 -11.82768 -11.71200 -11.54327 -11.38902 -11.20568 -11.13030 -10.93597 -10.89436 -10.51405 -10.29661 -10.10790 -9.91005 -9.87208 -9.57172 -9.12379 -7.83947 -7.34556 -6.96449 -4.51936 -0.57674 0.26945 0.52062 1.12697 1.15747 2.39787 2.46834 2.73241 3.08411 3.19012 3.28238 3.31327 3.78254 3.95129 3.95909 4.12681 4.38614 4.43139 4.45731 4.63385 4.92969 5.05650 5.19531 5.22824 5.37279 5.54353 5.61967 5.82333 5.88059 5.96519 6.20945 6.41066 6.46502 6.66440 7.04145 7.13299 7.28069 7.44873 7.57572 7.71572 7.79151 8.01082 8.26451 8.51959 8.70390 10.05334 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.014789 B = 0.004847 C = 0.004380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.821130 B = 5775.400798 C = 6391.509014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.084 3.916 3 Si 0.911 3.089 4 H -0.267 1.267 5 H -0.290 1.290 6 H -0.243 1.243 7 C -0.441 4.441 8 H 0.096 0.904 9 C 0.090 3.910 10 C -0.221 4.221 11 C -0.088 4.088 12 C -0.214 4.214 13 C -0.137 4.137 14 C 0.055 3.945 15 N -1.007 6.007 16 S 2.694 3.306 17 O -0.941 6.941 18 O -0.941 6.941 19 C -0.623 4.623 20 C -0.019 4.019 21 C -0.089 4.089 22 C -0.072 4.072 23 C -0.070 4.070 24 C 0.046 3.954 25 N 0.017 4.983 26 O -0.135 6.135 27 O -0.140 6.140 28 H 0.287 0.713 29 H 0.110 0.890 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.093 0.907 33 H 0.432 0.568 34 H 0.167 0.833 35 H 0.153 0.847 36 H 0.154 0.846 37 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.961 -8.438 1.527 18.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.136 4.136 3 Si 0.738 3.262 4 H -0.194 1.194 5 H -0.218 1.218 6 H -0.167 1.167 7 C -0.469 4.469 8 H 0.113 0.887 9 C 0.084 3.916 10 C -0.241 4.241 11 C -0.107 4.107 12 C -0.234 4.234 13 C -0.158 4.158 14 C -0.041 4.041 15 N -0.763 5.763 16 S 2.776 3.224 17 O -0.931 6.931 18 O -0.931 6.931 19 C -0.703 4.703 20 C -0.039 4.039 21 C -0.108 4.108 22 C -0.091 4.091 23 C -0.090 4.090 24 C -0.037 4.037 25 N 0.538 4.462 26 O -0.355 6.355 27 O -0.353 6.353 28 H 0.097 0.903 29 H 0.128 0.872 30 H 0.115 0.885 31 H 0.116 0.884 32 H 0.110 0.890 33 H 0.274 0.726 34 H 0.185 0.815 35 H 0.170 0.830 36 H 0.172 0.828 37 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 16.299 -7.947 2.623 18.322 hybrid contribution 0.033 0.058 -0.801 0.804 sum 16.332 -7.889 1.821 18.229 Atomic orbital electron populations 1.69666 1.07923 1.30385 1.34914 1.26112 0.94823 1.01570 0.91057 0.86368 0.80864 0.79642 0.79376 1.19361 1.21784 1.16656 1.19295 0.91154 0.95896 1.40592 0.88655 1.17539 0.93360 0.89869 0.90846 1.20865 0.95326 1.04599 1.03308 1.20355 0.93870 0.97686 0.98757 1.20058 0.97909 1.00814 1.04633 1.20644 0.93261 1.00712 1.01227 1.17296 0.91730 0.96725 0.98316 1.52510 1.30344 1.51908 1.41564 1.02340 0.73028 0.73765 0.73231 1.93630 1.65207 1.64581 1.69634 1.93606 1.80480 1.44641 1.74343 1.31543 1.20695 1.07670 1.10429 1.21205 0.89144 0.99114 0.94398 1.21775 1.00217 0.93980 0.94840 1.21500 0.96314 0.95754 0.95521 1.21184 0.90777 0.99898 0.97150 1.20537 0.82790 0.96540 1.03852 1.43649 1.02748 1.00902 0.98939 1.94507 1.91784 1.06984 1.42223 1.94503 1.32087 1.54786 1.53970 0.90277 0.87207 0.88493 0.88428 0.88958 0.72602 0.81507 0.82966 0.82847 0.82193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.10 13.93 55.55 0.77 -20.33 16 2 C 0.08 2.15 5.46 -17.33 -0.09 2.06 16 3 Si 0.91 20.60 24.51 -169.99 -4.17 16.44 16 4 H -0.27 -5.74 6.41 56.52 0.36 -5.38 16 5 H -0.29 -6.36 7.11 56.52 0.40 -5.95 16 6 H -0.24 -5.70 7.01 56.52 0.40 -5.31 16 7 C -0.44 -11.53 9.10 -37.89 -0.34 -11.88 16 8 H 0.10 2.56 7.17 -52.48 -0.38 2.19 16 9 C 0.09 2.22 5.09 -106.63 -0.54 1.67 16 10 C -0.22 -5.11 7.14 -39.29 -0.28 -5.39 16 11 C -0.09 -1.80 9.96 -39.99 -0.40 -2.20 16 12 C -0.21 -4.18 10.04 -39.36 -0.39 -4.58 16 13 C -0.14 -2.76 9.12 -39.42 -0.36 -3.12 16 14 C 0.06 1.24 6.16 -83.29 -0.51 0.73 16 15 N -1.01 -21.09 4.22 32.72 0.14 -20.95 16 16 S 2.69 51.44 4.55 -107.50 -0.49 50.95 16 17 O -0.94 -19.43 15.45 -67.19 -1.04 -20.47 16 18 O -0.94 -19.39 16.50 -57.17 -0.94 -20.33 16 19 C -0.62 -9.41 3.92 -39.58 -0.16 -9.56 16 20 C -0.02 -0.22 8.11 -39.59 -0.32 -0.54 16 21 C -0.09 -0.69 10.05 -39.59 -0.40 -1.09 16 22 C -0.07 -0.52 10.05 -39.58 -0.40 -0.92 16 23 C -0.07 -0.72 9.56 -39.58 -0.38 -1.10 16 24 C 0.05 0.66 6.81 -79.95 -0.54 0.12 16 25 N 0.02 0.30 4.45 33.96 0.15 0.45 16 26 O -0.14 -2.19 18.47 -29.46 -0.54 -2.74 16 27 O -0.14 -2.70 11.57 -37.25 -0.43 -3.13 16 28 H 0.29 6.84 8.30 -40.82 -0.34 6.50 16 29 H 0.11 2.51 4.53 -52.49 -0.24 2.28 16 30 H 0.10 1.70 8.06 -52.49 -0.42 1.28 16 31 H 0.10 1.60 8.06 -52.48 -0.42 1.18 16 32 H 0.09 1.59 3.84 -52.48 -0.20 1.38 16 33 H 0.43 8.97 6.27 -34.47 -0.22 8.76 16 34 H 0.17 1.76 7.35 -52.48 -0.39 1.38 16 35 H 0.15 0.61 8.06 -52.49 -0.42 0.18 16 36 H 0.15 0.49 8.06 -52.49 -0.42 0.07 16 37 H 0.16 1.28 7.63 -52.49 -0.40 0.88 16 LS Contribution 322.04 15.07 4.85 4.85 Total: -1.00 -32.11 322.04 -9.51 -41.62 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -2.69 Total: 9.41 kcal Atomic # 6 Polarization: -30.66 SS G_CDS: -5.12 Total: -35.79 kcal Atomic # 7 Polarization: -41.89 SS G_CDS: 1.06 Total: -40.82 kcal Atomic # 8 Polarization: -43.71 SS G_CDS: -2.96 Total: -46.67 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -4.17 Total: 16.44 kcal Atomic # 16 Polarization: 51.44 SS G_CDS: -0.49 Total: 50.95 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -32.11 -9.51 -41.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193357295.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.644 kcal (2) G-P(sol) polarization free energy of solvation -32.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds