Wall clock time and date at job start Wed Apr 1 2020 05:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30876 * 1 3 3 Si 1.86802 * 120.00186 * 2 1 4 4 H 1.48505 * 109.47184 * 267.48725 * 3 2 1 5 5 H 1.48503 * 109.46730 * 27.48649 * 3 2 1 6 6 H 1.48496 * 109.47039 * 147.48499 * 3 2 1 7 7 C 1.39925 * 120.00186 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99768 * 347.02774 * 7 2 1 9 9 C 1.41041 * 120.00447 * 167.03512 * 7 2 1 10 10 C 1.40732 * 120.30617 * 327.15650 * 9 7 2 11 11 C 1.36443 * 119.95372 * 180.28269 * 10 9 7 12 12 C 1.38896 * 120.59714 * 359.71195 * 11 10 9 13 13 C 1.38175 * 120.62680 * 0.02562 * 12 11 10 14 14 C 1.38746 * 120.02293 * 359.97438 * 13 12 11 15 15 N 1.38735 * 120.29649 * 180.02562 * 14 13 12 16 16 S 1.65601 * 119.99524 * 36.52908 * 15 14 13 17 17 O 1.42097 * 106.40411 * 178.69368 * 16 15 14 18 18 O 1.42102 * 106.40004 * 45.77339 * 16 15 14 19 19 C 1.76202 * 107.22193 * 292.23653 * 16 15 14 20 20 C 1.38253 * 120.00254 * 118.32463 * 19 16 15 21 21 C 1.38209 * 119.99879 * 179.97438 * 20 19 16 22 22 C 1.38257 * 120.00374 * 359.75236 * 21 20 19 23 23 C 1.38217 * 119.99682 * 0.52304 * 22 21 20 24 24 C 1.38217 * 119.99535 * 298.34965 * 19 16 15 25 25 N 1.48017 * 120.00215 * 359.97438 * 24 19 16 26 26 O 1.21793 * 119.99979 * 186.95274 * 25 24 19 27 27 O 1.21807 * 119.99977 * 6.95643 * 25 24 19 28 28 H 0.96998 * 120.00113 * 359.97438 * 1 2 3 29 29 H 1.08001 * 120.02382 * 359.97438 * 10 9 7 30 30 H 1.07998 * 119.70518 * 179.74428 * 11 10 9 31 31 H 1.08007 * 119.69013 * 180.02562 * 12 11 10 32 32 H 1.08003 * 119.98500 * 179.97438 * 13 12 11 33 33 H 0.96992 * 120.00614 * 216.53628 * 15 14 13 34 34 H 1.08005 * 119.99740 * 359.97438 * 20 19 16 35 35 H 1.07998 * 119.99679 * 179.97438 * 21 20 19 36 36 H 1.07994 * 120.00633 * 180.27359 * 22 21 20 37 37 H 1.07992 * 119.99808 * 179.74346 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.5435 2.0157 -1.3988 5 1 1.4146 2.6674 0.6462 6 1 3.5127 1.4560 0.7525 7 6 2.0084 -1.2118 -0.0005 8 1 1.4891 -2.1353 0.2090 9 6 3.3919 -1.2273 -0.2746 10 6 3.9492 -0.2944 -1.1688 11 6 5.2876 -0.3196 -1.4331 12 6 6.1113 -1.2562 -0.8221 13 6 5.5908 -2.1799 0.0639 14 6 4.2335 -2.1776 0.3515 15 7 3.7049 -3.1021 1.2407 16 16 4.5763 -3.5629 2.5714 17 8 3.7612 -4.4811 3.2866 18 8 5.0917 -2.3699 3.1462 19 6 5.9669 -4.4776 1.9932 20 6 7.2475 -4.0203 2.2429 21 6 8.3382 -4.7381 1.7899 22 6 8.1488 -5.9162 1.0914 23 6 6.8685 -6.3704 0.8368 24 6 5.7774 -5.6521 1.2896 25 7 4.4063 -6.1417 1.0223 26 8 4.2387 -7.2364 0.5154 27 8 3.4458 -5.4498 1.3092 28 1 -0.4850 0.8400 0.0004 29 1 3.3172 0.4378 -1.6494 30 1 5.7103 0.3956 -2.1232 31 1 7.1688 -1.2627 -1.0417 32 1 6.2408 -2.9039 0.5328 33 1 2.8251 -3.4787 1.0829 34 1 7.3955 -3.1021 2.7921 35 1 9.3385 -4.3807 1.9846 36 1 9.0011 -6.4794 0.7412 37 1 6.7205 -7.2884 0.2877 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193357295.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:30:53 Heat of formation + Delta-G solvation = -22.531227 kcal Electronic energy + Delta-G solvation = -29292.012840 eV Core-core repulsion = 25129.723958 eV Total energy + Delta-G solvation = -4162.288882 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.066 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.55736 -40.62869 -40.08390 -38.64893 -37.80311 -37.15928 -35.78699 -35.51096 -33.34222 -32.97410 -32.26845 -29.97310 -27.92591 -26.93626 -24.84024 -23.90090 -23.64466 -22.44311 -21.15665 -20.40239 -20.02073 -19.41570 -18.95484 -18.86061 -18.65638 -18.24737 -17.16519 -16.72231 -16.54430 -16.04163 -16.00088 -15.79585 -15.62004 -15.10204 -14.71484 -14.36044 -14.10098 -13.89399 -13.69739 -13.45862 -13.38783 -13.32292 -13.16178 -12.91622 -12.88947 -12.67990 -12.56522 -12.48839 -12.22872 -12.09703 -11.91435 -11.69349 -11.42136 -11.02019 -10.86074 -10.64766 -9.57950 -9.04276 -8.85456 -6.45085 -1.65335 -0.92810 -0.51975 0.07573 0.10429 0.70631 0.73330 1.24452 1.39294 1.48426 1.74904 2.03530 2.12025 2.43878 2.62237 2.91479 3.32391 3.40041 3.53133 3.75376 3.78592 3.90218 4.05809 4.24913 4.33391 4.39999 4.43453 4.70090 4.78453 4.84310 4.87345 4.90984 4.97537 5.26400 5.33481 5.46699 5.57779 5.83550 5.93029 6.05377 6.15978 6.31297 6.38260 6.71479 6.80553 8.22912 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.014789 B = 0.004847 C = 0.004380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.821130 B = 5775.400798 C = 6391.509014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.043 3.957 3 Si 0.961 3.039 4 H -0.245 1.245 5 H -0.282 1.282 6 H -0.257 1.257 7 C -0.477 4.477 8 H 0.060 0.940 9 C 0.058 3.942 10 C -0.231 4.231 11 C -0.096 4.096 12 C -0.187 4.187 13 C -0.148 4.148 14 C 0.049 3.951 15 N -1.020 6.020 16 S 2.699 3.301 17 O -0.974 6.974 18 O -0.971 6.971 19 C -0.644 4.644 20 C -0.028 4.028 21 C -0.064 4.064 22 C -0.043 4.043 23 C -0.061 4.061 24 C 0.015 3.985 25 N 0.015 4.985 26 O -0.105 6.105 27 O -0.223 6.223 28 H 0.292 0.708 29 H 0.107 0.893 30 H 0.137 0.863 31 H 0.147 0.853 32 H 0.126 0.874 33 H 0.425 0.575 34 H 0.173 0.827 35 H 0.207 0.793 36 H 0.213 0.787 37 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.176 -9.328 0.071 24.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.170 4.170 3 Si 0.785 3.215 4 H -0.170 1.170 5 H -0.208 1.208 6 H -0.181 1.181 7 C -0.508 4.508 8 H 0.078 0.922 9 C 0.052 3.948 10 C -0.251 4.251 11 C -0.115 4.115 12 C -0.207 4.207 13 C -0.169 4.169 14 C -0.047 4.047 15 N -0.773 5.773 16 S 2.789 3.211 17 O -0.964 6.964 18 O -0.961 6.961 19 C -0.732 4.732 20 C -0.048 4.048 21 C -0.082 4.082 22 C -0.061 4.061 23 C -0.081 4.081 24 C -0.069 4.069 25 N 0.530 4.470 26 O -0.338 6.338 27 O -0.417 6.417 28 H 0.102 0.898 29 H 0.125 0.875 30 H 0.154 0.846 31 H 0.165 0.835 32 H 0.143 0.857 33 H 0.265 0.735 34 H 0.190 0.810 35 H 0.224 0.776 36 H 0.230 0.770 37 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 23.374 -8.669 1.231 24.960 hybrid contribution -1.646 -0.053 -0.410 1.697 sum 21.729 -8.722 0.822 23.428 Atomic orbital electron populations 1.69715 1.08983 1.31211 1.38260 1.26776 0.95444 1.04018 0.90783 0.85612 0.79044 0.76623 0.80263 1.16996 1.20837 1.18122 1.19239 0.92548 0.95158 1.43844 0.92208 1.17789 0.93049 0.91671 0.92279 1.21044 0.96953 1.04085 1.03022 1.20821 0.92713 0.98732 0.99252 1.20740 1.00179 0.98214 1.01550 1.21139 0.92499 1.01774 1.01510 1.17688 0.92930 0.96040 0.98033 1.52626 1.30846 1.52159 1.41681 1.01571 0.73567 0.73312 0.72640 1.93575 1.67274 1.64918 1.70658 1.93556 1.80948 1.46367 1.75218 1.30664 1.19837 1.08575 1.14167 1.21605 0.88709 1.00002 0.94459 1.22432 1.00973 0.92881 0.91899 1.22276 0.96248 0.95029 0.92577 1.21790 0.90562 0.99938 0.95799 1.20796 0.81664 0.97822 1.06573 1.44155 1.04004 1.00603 0.98233 1.94426 1.92356 1.06775 1.40201 1.94539 1.33814 1.55658 1.57702 0.89775 0.87501 0.84555 0.83481 0.85683 0.73528 0.80978 0.77642 0.77013 0.79793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -48.61 13.93 21.83 0.30 -48.31 16 2 C 0.04 2.39 5.46 85.24 0.47 2.85 16 3 Si 0.96 44.01 24.51 68.60 1.68 45.69 16 4 H -0.25 -10.18 6.41 99.48 0.64 -9.55 16 5 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 6 H -0.26 -12.16 7.01 99.48 0.70 -11.46 16 7 C -0.48 -27.40 9.10 23.37 0.21 -27.19 16 8 H 0.06 3.68 7.17 -2.91 -0.02 3.66 16 9 C 0.06 2.98 5.09 -21.17 -0.11 2.87 16 10 C -0.23 -10.64 7.14 22.46 0.16 -10.48 16 11 C -0.10 -3.63 9.96 22.01 0.22 -3.41 16 12 C -0.19 -6.45 10.04 22.41 0.22 -6.23 16 13 C -0.15 -5.66 9.12 22.38 0.20 -5.45 16 14 C 0.05 2.30 6.16 38.99 0.24 2.54 16 15 N -1.02 -46.48 4.22 -50.39 -0.21 -46.69 16 16 S 2.70 109.44 4.55 -56.49 -0.26 109.18 16 17 O -0.97 -44.25 15.45 -118.42 -1.83 -46.08 16 18 O -0.97 -41.81 16.50 -128.00 -2.11 -43.92 16 19 C -0.64 -18.64 3.92 22.27 0.09 -18.55 16 20 C -0.03 -0.53 8.11 22.27 0.18 -0.35 16 21 C -0.06 -0.49 10.05 22.27 0.22 -0.26 16 22 C -0.04 -0.26 10.05 22.27 0.22 -0.04 16 23 C -0.06 -0.92 9.56 22.27 0.21 -0.71 16 24 C 0.01 0.40 6.81 36.38 0.25 0.65 16 25 N 0.02 0.54 4.45 -46.46 -0.21 0.33 16 26 O -0.10 -3.38 18.47 18.90 0.35 -3.03 16 27 O -0.22 -9.44 11.57 26.32 0.30 -9.13 16 28 H 0.29 15.01 8.30 -92.71 -0.77 14.24 16 29 H 0.11 4.89 4.53 -2.91 -0.01 4.88 16 30 H 0.14 4.06 8.06 -2.91 -0.02 4.04 16 31 H 0.15 3.68 8.06 -2.91 -0.02 3.65 16 32 H 0.13 3.91 3.84 -2.91 -0.01 3.90 16 33 H 0.42 20.33 6.27 -96.76 -0.61 19.72 16 34 H 0.17 3.04 7.35 -2.91 -0.02 3.02 16 35 H 0.21 -0.46 8.06 -2.91 -0.02 -0.48 16 36 H 0.21 -0.98 8.06 -2.91 -0.02 -1.01 16 37 H 0.18 1.87 7.63 -2.91 -0.02 1.85 16 Total: -1.00 -82.10 322.04 1.30 -80.80 By element: Atomic # 1 Polarization: 24.43 SS G_CDS: 0.48 Total: 24.92 kcal Atomic # 6 Polarization: -66.54 SS G_CDS: 2.79 Total: -63.75 kcal Atomic # 7 Polarization: -94.55 SS G_CDS: -0.12 Total: -94.67 kcal Atomic # 8 Polarization: -98.88 SS G_CDS: -3.29 Total: -102.17 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 1.68 Total: 45.69 kcal Atomic # 16 Polarization: 109.44 SS G_CDS: -0.26 Total: 109.18 kcal Total: -82.10 1.30 -80.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193357295.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.269 kcal (2) G-P(sol) polarization free energy of solvation -82.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds