Wall clock time and date at job start Wed Apr 1 2020 05:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47209 * 270.00481 * 3 2 1 5 5 H 1.48501 * 109.47358 * 29.99973 * 3 2 1 6 6 H 1.48496 * 109.47341 * 150.00585 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 O 1.42904 * 112.94304 * 50.61622 * 9 7 2 11 11 C 1.53940 * 113.74765 * 279.01867 * 9 7 2 12 12 N 1.47807 * 86.04034 * 222.08636 * 11 9 7 13 13 C 1.34781 * 134.45550 * 204.64597 * 12 11 9 14 14 O 1.21640 * 119.99871 * 179.86284 * 13 12 11 15 15 C 1.47000 * 120.00002 * 359.86498 * 13 12 11 16 16 C 1.33683 * 124.65896 * 179.72286 * 15 13 12 17 17 C 1.40423 * 115.57443 * 179.82893 * 16 15 13 18 18 C 1.41572 * 128.85178 * 180.13377 * 17 16 15 19 19 C 1.35918 * 120.49284 * 180.26563 * 18 17 16 20 20 N 1.48017 * 119.65338 * 180.02562 * 19 18 17 21 21 O 1.21800 * 120.00098 * 180.02562 * 20 19 18 22 22 O 1.21805 * 119.99785 * 0.02562 * 20 19 18 23 23 C 1.38980 * 120.69569 * 0.04506 * 19 18 17 24 24 C 1.37392 * 120.18518 * 359.97438 * 23 19 18 25 25 C 1.39898 * 120.18069 * 359.97438 * 24 23 19 26 26 S 1.75484 * 124.66104 * 0.02609 * 15 13 12 27 27 C 1.47571 * 91.05019 * 24.54809 * 12 11 9 28 28 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 29 29 H 0.96703 * 113.99734 * 309.65903 * 10 9 7 30 30 H 1.08997 * 113.76880 * 336.35532 * 11 9 7 31 31 H 1.09008 * 113.76856 * 107.74127 * 11 9 7 32 32 H 1.07999 * 122.21310 * 359.97438 * 16 15 13 33 33 H 1.07996 * 119.75274 * 0.27921 * 18 17 16 34 34 H 1.08001 * 119.90560 * 179.97438 * 23 19 18 35 35 H 1.08000 * 119.90599 * 180.02562 * 24 23 19 36 36 H 1.09004 * 113.77444 * 221.15143 * 27 12 11 37 37 H 1.09004 * 113.87147 * 89.76886 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 8 0.2451 -2.5661 -1.0073 11 6 0.7559 -2.9227 1.4000 12 7 1.1919 -4.2852 1.0284 13 6 0.8425 -5.5273 1.4180 14 8 1.3864 -6.4957 0.9220 15 6 -0.1957 -5.7115 2.4421 16 6 -0.6171 -6.8975 2.8927 17 6 -1.6172 -6.8513 3.8774 18 6 -2.2574 -7.9238 4.5440 19 6 -3.2175 -7.6823 5.4753 20 7 -3.8743 -8.8175 6.1613 21 8 -4.7358 -8.6084 6.9965 22 8 -3.5533 -9.9609 5.8905 23 6 -3.5892 -6.3806 5.7899 24 6 -2.9866 -5.3187 5.1599 25 6 -1.9950 -5.5417 4.1986 26 16 -1.0577 -4.4052 3.2358 27 6 2.1610 -3.7398 0.0582 28 1 -0.4850 0.8400 0.0004 29 1 -0.3471 -1.8018 -1.0246 30 1 1.3268 -2.4870 2.2200 31 1 -0.3218 -2.8255 1.5318 32 1 -0.2134 -7.8294 2.5254 33 1 -1.9806 -8.9413 4.3109 34 1 -4.3540 -6.2034 6.5316 35 1 -3.2787 -4.3090 5.4082 36 1 2.2032 -4.2939 -0.8796 37 1 3.1463 -3.5443 0.4813 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193975813.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:28:30 Heat of formation + Delta-G solvation = 0.917653 kcal Electronic energy + Delta-G solvation = -26787.773034 eV Core-core repulsion = 22626.500972 eV Total energy + Delta-G solvation = -4161.272062 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.066 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.42399 -40.30655 -39.72897 -37.74910 -36.79309 -35.62849 -34.18232 -32.39093 -32.22147 -30.61991 -28.84240 -26.94314 -25.96490 -25.59434 -24.22533 -23.34829 -21.66838 -20.34534 -19.31571 -19.07204 -18.78013 -17.90189 -17.75680 -17.47750 -16.95906 -16.28858 -15.42507 -15.33619 -15.20250 -14.95075 -14.55176 -14.36620 -14.22795 -14.10834 -13.40081 -12.94064 -12.80315 -12.75117 -12.28566 -12.03977 -11.82383 -11.77682 -11.73453 -11.52948 -11.41034 -11.35815 -11.19348 -10.94010 -10.63292 -10.49978 -10.44678 -10.06723 -9.51580 -9.20828 -8.92928 -8.68616 -8.33109 -8.12017 -6.55086 -4.65988 -0.46487 -0.14195 0.92186 0.97283 1.19436 1.50046 1.54035 2.84179 3.04962 3.06191 3.14326 3.16873 3.31096 3.88578 4.06003 4.09981 4.33767 4.38873 4.52815 4.70419 4.83794 4.91416 5.24805 5.31674 5.32703 5.33817 5.53774 5.67602 5.72268 5.82482 5.92482 6.10588 6.15542 6.21014 6.32195 6.40193 6.86833 7.40753 7.47562 7.62477 8.05727 8.30711 8.38071 9.05505 9.23410 10.51900 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.021231 B = 0.002525 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.503575 B =11087.473382 C =12073.478321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.074 3.926 3 Si 0.908 3.092 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.539 4.539 8 H 0.074 0.926 9 C 0.245 3.755 10 O -0.571 6.571 11 C 0.067 3.933 12 N -0.626 5.626 13 C 0.594 3.406 14 O -0.543 6.543 15 C -0.194 4.194 16 C -0.057 4.057 17 C -0.081 4.081 18 C 0.006 3.994 19 C -0.046 4.046 20 N 0.031 4.969 21 O -0.159 6.159 22 O -0.164 6.164 23 C -0.060 4.060 24 C -0.069 4.069 25 C -0.132 4.132 26 S 0.215 5.785 27 C 0.116 3.884 28 H 0.275 0.725 29 H 0.393 0.607 30 H 0.091 0.909 31 H 0.075 0.925 32 H 0.163 0.837 33 H 0.159 0.841 34 H 0.159 0.841 35 H 0.152 0.848 36 H 0.076 0.924 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.480 -6.480 10.196 13.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.130 4.130 3 Si 0.735 3.265 4 H -0.202 1.202 5 H -0.209 1.209 6 H -0.195 1.195 7 C -0.577 4.577 8 H 0.092 0.908 9 C 0.203 3.797 10 O -0.382 6.382 11 C -0.056 4.056 12 N -0.358 5.358 13 C 0.381 3.619 14 O -0.424 6.424 15 C -0.314 4.314 16 C -0.088 4.088 17 C -0.092 4.092 18 C -0.015 4.015 19 C -0.132 4.132 20 N 0.550 4.450 21 O -0.375 6.375 22 O -0.379 6.379 23 C -0.083 4.083 24 C -0.092 4.092 25 C -0.249 4.249 26 S 0.486 5.514 27 C -0.005 4.005 28 H 0.085 0.915 29 H 0.248 0.752 30 H 0.109 0.891 31 H 0.093 0.907 32 H 0.180 0.820 33 H 0.177 0.823 34 H 0.177 0.823 35 H 0.170 0.830 36 H 0.095 0.905 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.653 -5.422 9.315 11.740 hybrid contribution -0.210 -0.409 0.574 0.736 sum -4.863 -5.832 9.889 12.468 Atomic orbital electron populations 1.69385 1.06180 1.28426 1.49617 1.25072 0.95060 0.99977 0.92842 0.86314 0.79765 0.81780 0.78612 1.20151 1.20852 1.19506 1.21458 0.94013 0.89649 1.52615 0.90811 1.19789 0.85596 0.91400 0.82938 1.86078 1.47046 1.49848 1.55269 1.24654 0.99886 0.77255 1.03836 1.50192 1.40078 1.04279 1.41250 1.16596 0.81697 0.82712 0.80867 1.90786 1.55786 1.39070 1.56734 1.24070 1.04812 0.97435 1.05053 1.20092 0.94737 0.99355 0.94644 1.17920 0.99692 0.91686 0.99887 1.20652 0.90124 1.00802 0.89910 1.20430 1.02902 0.86819 1.03023 1.43590 0.99572 1.02235 0.99559 1.94532 1.24738 1.91458 1.26806 1.94552 1.67724 1.06824 1.68796 1.20802 0.99369 0.88846 0.99298 1.20467 0.94429 0.99763 0.94507 1.23955 1.01318 0.98523 1.01110 1.85165 1.30721 1.03937 1.31552 1.23552 0.93257 0.92556 0.91119 0.91505 0.75170 0.89097 0.90731 0.81992 0.82310 0.82346 0.82989 0.90511 0.88947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -20.95 11.21 55.43 0.62 -20.33 16 2 C 0.07 1.70 5.40 -17.82 -0.10 1.60 16 3 Si 0.91 18.20 29.54 -169.99 -5.02 13.18 16 4 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 5 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 6 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 7 C -0.54 -12.44 8.61 -34.44 -0.30 -12.73 16 8 H 0.07 1.66 7.81 -52.49 -0.41 1.25 16 9 C 0.24 5.35 1.40 -90.85 -0.13 5.23 16 10 O -0.57 -13.54 13.49 -35.23 -0.48 -14.02 16 11 C 0.07 1.29 6.67 -2.84 -0.02 1.27 16 12 N -0.63 -12.11 3.61 -179.55 -0.65 -12.76 16 13 C 0.59 11.25 8.02 -12.71 -0.10 11.15 16 14 O -0.54 -11.58 17.45 5.24 0.09 -11.49 16 15 C -0.19 -2.98 6.31 -37.63 -0.24 -3.22 16 16 C -0.06 -0.75 9.79 -40.36 -0.40 -1.14 16 17 C -0.08 -0.94 5.87 -107.13 -0.63 -1.57 16 18 C 0.01 0.06 9.54 -39.14 -0.37 -0.31 16 19 C -0.05 -0.49 6.79 -80.50 -0.55 -1.04 16 20 N 0.03 0.38 4.45 33.69 0.15 0.53 16 21 O -0.16 -2.00 18.42 -29.46 -0.54 -2.54 16 22 O -0.16 -2.13 18.37 -29.46 -0.54 -2.67 16 23 C -0.06 -0.52 9.53 -39.61 -0.38 -0.90 16 24 C -0.07 -0.60 10.07 -39.27 -0.40 -1.00 16 25 C -0.13 -1.47 6.50 -38.28 -0.25 -1.72 16 26 S 0.22 2.79 19.81 -107.50 -2.13 0.66 16 27 C 0.12 2.31 8.23 -2.97 -0.02 2.28 16 28 H 0.27 6.14 8.31 -40.82 -0.34 5.80 16 29 H 0.39 9.41 6.61 45.56 0.30 9.72 16 30 H 0.09 1.66 8.09 -51.93 -0.42 1.24 16 31 H 0.07 1.42 6.38 -51.92 -0.33 1.08 16 32 H 0.16 1.96 7.96 -52.49 -0.42 1.54 16 33 H 0.16 1.39 7.52 -52.49 -0.39 0.99 16 34 H 0.16 1.08 7.59 -52.49 -0.40 0.68 16 35 H 0.15 0.93 8.06 -52.49 -0.42 0.50 16 36 H 0.08 1.55 8.14 -51.93 -0.42 1.12 16 37 H 0.09 1.65 8.09 -51.93 -0.42 1.23 16 LS Contribution 344.95 15.07 5.20 5.20 Total: -1.00 -26.99 344.95 -9.64 -36.62 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -2.47 Total: 9.70 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: -3.87 Total: -2.09 kcal Atomic # 7 Polarization: -32.68 SS G_CDS: 0.12 Total: -32.55 kcal Atomic # 8 Polarization: -29.25 SS G_CDS: -1.47 Total: -30.72 kcal Atomic # 14 Polarization: 18.20 SS G_CDS: -5.02 Total: 13.18 kcal Atomic # 16 Polarization: 2.79 SS G_CDS: -2.13 Total: 0.66 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -26.99 -9.64 -36.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193975813.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.540 kcal (2) G-P(sol) polarization free energy of solvation -26.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds