Wall clock time and date at job start Wed Apr 1 2020 05:28:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47209 * 270.00481 * 3 2 1 5 5 H 1.48501 * 109.47358 * 29.99973 * 3 2 1 6 6 H 1.48496 * 109.47341 * 150.00585 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 O 1.42904 * 112.94304 * 50.61622 * 9 7 2 11 11 C 1.53940 * 113.74765 * 279.01867 * 9 7 2 12 12 N 1.47807 * 86.04034 * 222.08636 * 11 9 7 13 13 C 1.34781 * 134.45550 * 204.64597 * 12 11 9 14 14 O 1.21640 * 119.99871 * 179.86284 * 13 12 11 15 15 C 1.47000 * 120.00002 * 359.86498 * 13 12 11 16 16 C 1.33683 * 124.65896 * 179.72286 * 15 13 12 17 17 C 1.40423 * 115.57443 * 179.82893 * 16 15 13 18 18 C 1.41572 * 128.85178 * 180.13377 * 17 16 15 19 19 C 1.35918 * 120.49284 * 180.26563 * 18 17 16 20 20 N 1.48017 * 119.65338 * 180.02562 * 19 18 17 21 21 O 1.21800 * 120.00098 * 180.02562 * 20 19 18 22 22 O 1.21805 * 119.99785 * 0.02562 * 20 19 18 23 23 C 1.38980 * 120.69569 * 0.04506 * 19 18 17 24 24 C 1.37392 * 120.18518 * 359.97438 * 23 19 18 25 25 C 1.39898 * 120.18069 * 359.97438 * 24 23 19 26 26 S 1.75484 * 124.66104 * 0.02609 * 15 13 12 27 27 C 1.47571 * 91.05019 * 24.54809 * 12 11 9 28 28 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 29 29 H 0.96703 * 113.99734 * 309.65903 * 10 9 7 30 30 H 1.08997 * 113.76880 * 336.35532 * 11 9 7 31 31 H 1.09008 * 113.76856 * 107.74127 * 11 9 7 32 32 H 1.07999 * 122.21310 * 359.97438 * 16 15 13 33 33 H 1.07996 * 119.75274 * 0.27921 * 18 17 16 34 34 H 1.08001 * 119.90560 * 179.97438 * 23 19 18 35 35 H 1.08000 * 119.90599 * 180.02562 * 24 23 19 36 36 H 1.09004 * 113.77444 * 221.15143 * 27 12 11 37 37 H 1.09004 * 113.87147 * 89.76886 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 8 0.2451 -2.5661 -1.0073 11 6 0.7559 -2.9227 1.4000 12 7 1.1919 -4.2852 1.0284 13 6 0.8425 -5.5273 1.4180 14 8 1.3864 -6.4957 0.9220 15 6 -0.1957 -5.7115 2.4421 16 6 -0.6171 -6.8975 2.8927 17 6 -1.6172 -6.8513 3.8774 18 6 -2.2574 -7.9238 4.5440 19 6 -3.2175 -7.6823 5.4753 20 7 -3.8743 -8.8175 6.1613 21 8 -4.7358 -8.6084 6.9965 22 8 -3.5533 -9.9609 5.8905 23 6 -3.5892 -6.3806 5.7899 24 6 -2.9866 -5.3187 5.1599 25 6 -1.9950 -5.5417 4.1986 26 16 -1.0577 -4.4052 3.2358 27 6 2.1610 -3.7398 0.0582 28 1 -0.4850 0.8400 0.0004 29 1 -0.3471 -1.8018 -1.0246 30 1 1.3268 -2.4870 2.2200 31 1 -0.3218 -2.8255 1.5318 32 1 -0.2134 -7.8294 2.5254 33 1 -1.9806 -8.9413 4.3109 34 1 -4.3540 -6.2034 6.5316 35 1 -3.2787 -4.3090 5.4082 36 1 2.2032 -4.2939 -0.8796 37 1 3.1463 -3.5443 0.4813 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193975813.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:28:29 Heat of formation + Delta-G solvation = -14.462844 kcal Electronic energy + Delta-G solvation = -26788.439982 eV Core-core repulsion = 22626.500972 eV Total energy + Delta-G solvation = -4161.939011 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.066 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.33773 -41.47550 -40.99507 -39.25908 -37.73616 -36.65121 -35.90305 -34.17328 -33.05162 -31.75712 -30.26609 -27.93214 -27.44950 -27.17193 -25.38640 -24.20343 -22.76777 -21.71418 -20.57879 -20.05999 -19.75548 -19.45117 -18.78709 -18.66740 -18.24257 -17.54580 -17.01396 -16.66581 -16.38235 -16.11743 -15.95544 -15.34485 -15.31144 -15.07702 -14.87808 -14.49676 -14.27413 -13.87519 -13.76099 -13.45134 -13.02490 -12.89723 -12.81388 -12.80096 -12.70901 -12.41493 -12.32921 -12.28425 -12.24936 -11.97139 -11.62923 -11.32493 -11.15612 -10.67651 -10.35670 -10.18940 -9.75006 -9.21542 -8.28562 -6.45052 -1.36600 -1.09792 -0.03899 0.09319 0.27556 0.51087 0.54992 1.46798 1.51337 1.58803 1.65471 1.81382 2.11043 2.40057 2.90571 2.98517 3.21705 3.40240 3.50337 3.56962 3.68909 3.99212 4.04309 4.09057 4.31087 4.43577 4.49591 4.51527 4.52937 4.59862 4.68685 4.77141 4.79510 4.87861 5.00258 5.17106 5.27784 5.71448 5.88537 6.42989 6.56288 6.60854 6.82095 7.27891 7.40605 8.77733 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.021231 B = 0.002525 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.503575 B =11087.473382 C =12073.478321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.037 3.963 3 Si 0.965 3.035 4 H -0.281 1.281 5 H -0.281 1.281 6 H -0.267 1.267 7 C -0.556 4.556 8 H 0.074 0.926 9 C 0.224 3.776 10 O -0.585 6.585 11 C 0.084 3.916 12 N -0.629 5.629 13 C 0.592 3.408 14 O -0.577 6.577 15 C -0.234 4.234 16 C -0.033 4.033 17 C -0.096 4.096 18 C 0.013 3.987 19 C -0.054 4.054 20 N 0.032 4.968 21 O -0.157 6.157 22 O -0.188 6.188 23 C -0.042 4.042 24 C -0.063 4.063 25 C -0.122 4.122 26 S 0.212 5.788 27 C 0.115 3.885 28 H 0.277 0.723 29 H 0.389 0.611 30 H 0.100 0.900 31 H 0.077 0.923 32 H 0.167 0.833 33 H 0.171 0.829 34 H 0.186 0.814 35 H 0.185 0.815 36 H 0.066 0.934 37 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.563 -5.939 12.209 15.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.164 4.164 3 Si 0.790 3.210 4 H -0.207 1.207 5 H -0.206 1.206 6 H -0.191 1.191 7 C -0.594 4.594 8 H 0.092 0.908 9 C 0.183 3.817 10 O -0.396 6.396 11 C -0.039 4.039 12 N -0.361 5.361 13 C 0.381 3.619 14 O -0.461 6.461 15 C -0.353 4.353 16 C -0.065 4.065 17 C -0.105 4.105 18 C -0.007 4.007 19 C -0.139 4.139 20 N 0.549 4.451 21 O -0.375 6.375 22 O -0.398 6.398 23 C -0.066 4.066 24 C -0.086 4.086 25 C -0.240 4.240 26 S 0.483 5.517 27 C -0.006 4.006 28 H 0.087 0.913 29 H 0.243 0.757 30 H 0.118 0.882 31 H 0.095 0.905 32 H 0.184 0.816 33 H 0.189 0.811 34 H 0.203 0.797 35 H 0.203 0.797 36 H 0.085 0.915 37 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -5.714 -4.913 11.317 13.596 hybrid contribution 0.012 -0.651 0.030 0.652 sum -5.703 -5.564 11.347 13.865 Atomic orbital electron populations 1.69443 1.06943 1.29019 1.49815 1.25681 0.95759 1.02364 0.92616 0.85440 0.78813 0.78613 0.78084 1.20698 1.20595 1.19117 1.21672 0.94223 0.90454 1.53013 0.90776 1.20054 0.85821 0.91905 0.83929 1.86066 1.47470 1.49669 1.56434 1.24408 1.00163 0.76925 1.02439 1.50167 1.40066 1.04658 1.41244 1.17031 0.81922 0.81886 0.81029 1.90748 1.57266 1.39767 1.58278 1.23684 1.06054 0.99212 1.06321 1.20248 0.93791 0.98886 0.93614 1.17826 1.00060 0.92343 1.00299 1.20727 0.89566 1.01145 0.89293 1.20593 1.03133 0.86961 1.03224 1.43784 0.99441 1.02466 0.99440 1.94519 1.24742 1.91473 1.26811 1.94561 1.68309 1.07526 1.69415 1.21162 0.98918 0.87746 0.98773 1.20836 0.93141 1.01388 0.93208 1.24064 1.01309 0.97587 1.01027 1.85007 1.31086 1.03580 1.32004 1.23563 0.94031 0.91753 0.91285 0.91347 0.75673 0.88173 0.90547 0.81560 0.81117 0.79708 0.79728 0.91549 0.87178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -42.49 11.21 21.45 0.24 -42.25 16 2 C 0.04 1.70 5.40 84.65 0.46 2.16 16 3 Si 0.96 36.85 29.54 68.60 2.03 38.88 16 4 H -0.28 -10.90 7.11 99.48 0.71 -10.19 16 5 H -0.28 -10.53 7.11 99.48 0.71 -9.82 16 6 H -0.27 -9.95 7.11 99.48 0.71 -9.24 16 7 C -0.56 -25.64 8.61 25.60 0.22 -25.41 16 8 H 0.07 3.32 7.81 -2.91 -0.02 3.30 16 9 C 0.22 9.92 1.40 -10.88 -0.02 9.91 16 10 O -0.58 -28.37 13.49 -148.98 -2.01 -30.38 16 11 C 0.08 3.22 6.67 86.44 0.58 3.80 16 12 N -0.63 -24.69 3.61 -844.05 -3.05 -27.74 16 13 C 0.59 22.81 8.02 86.54 0.69 23.50 16 14 O -0.58 -25.25 17.45 -4.16 -0.07 -25.32 16 15 C -0.23 -7.13 6.31 23.53 0.15 -6.98 16 16 C -0.03 -0.85 9.79 21.77 0.21 -0.64 16 17 C -0.10 -2.02 5.87 -21.49 -0.13 -2.15 16 18 C 0.01 0.25 9.54 22.55 0.22 0.46 16 19 C -0.05 -0.98 6.79 36.01 0.24 -0.74 16 20 N 0.03 0.71 4.45 -47.33 -0.21 0.50 16 21 O -0.16 -3.54 18.42 18.89 0.35 -3.19 16 22 O -0.19 -4.63 18.37 18.88 0.35 -4.28 16 23 C -0.04 -0.57 9.53 22.25 0.21 -0.36 16 24 C -0.06 -0.85 10.07 22.47 0.23 -0.63 16 25 C -0.12 -2.41 6.50 23.11 0.15 -2.26 16 26 S 0.21 5.25 19.81 -56.49 -1.12 4.14 16 27 C 0.12 4.65 8.23 86.49 0.71 5.36 16 28 H 0.28 12.25 8.31 -92.71 -0.77 11.48 16 29 H 0.39 19.05 6.61 -74.06 -0.49 18.56 16 30 H 0.10 3.63 8.09 -2.39 -0.02 3.61 16 31 H 0.08 2.90 6.38 -2.38 -0.02 2.88 16 32 H 0.17 3.96 7.96 -2.91 -0.02 3.93 16 33 H 0.17 2.67 7.52 -2.91 -0.02 2.65 16 34 H 0.19 1.59 7.59 -2.91 -0.02 1.57 16 35 H 0.19 1.33 8.06 -2.91 -0.02 1.30 16 36 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 37 H 0.11 3.97 8.09 -2.39 -0.02 3.95 16 Total: -1.00 -58.01 344.95 1.10 -56.91 By element: Atomic # 1 Polarization: 26.05 SS G_CDS: 0.67 Total: 26.73 kcal Atomic # 6 Polarization: 2.10 SS G_CDS: 3.93 Total: 6.03 kcal Atomic # 7 Polarization: -66.47 SS G_CDS: -3.02 Total: -69.49 kcal Atomic # 8 Polarization: -61.80 SS G_CDS: -1.39 Total: -63.18 kcal Atomic # 14 Polarization: 36.85 SS G_CDS: 2.03 Total: 38.88 kcal Atomic # 16 Polarization: 5.25 SS G_CDS: -1.12 Total: 4.14 kcal Total: -58.01 1.10 -56.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193975813.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.446 kcal (2) G-P(sol) polarization free energy of solvation -58.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds