Wall clock time and date at job start Wed Apr 1 2020 06:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 S 1.65607 * 119.99926 * 2 1 4 4 O 1.42098 * 104.27549 * 308.92385 * 3 2 1 5 5 O 1.42104 * 104.27230 * 181.06751 * 3 2 1 6 6 C 1.81401 * 104.45075 * 64.99588 * 3 2 1 7 7 C 1.52998 * 109.46972 * 179.97438 * 6 3 2 8 8 N 1.46501 * 109.46698 * 179.97438 * 7 6 3 9 9 S 1.65602 * 119.99510 * 164.72670 * 8 7 6 10 10 O 1.42106 * 106.40261 * 178.54339 * 9 8 7 11 11 O 1.42097 * 106.40533 * 311.46033 * 9 8 7 12 12 C 1.76200 * 107.22079 * 65.00170 * 9 8 7 13 13 C 1.38630 * 119.74993 * 269.72817 * 12 9 8 14 14 C 1.37618 * 120.24695 * 179.71446 * 13 12 9 15 15 C 1.40719 * 119.74378 * 0.57642 * 14 13 12 16 16 C 1.41396 * 120.24427 * 179.67814 * 15 14 13 17 17 H 1.07991 * 120.00468 * 155.30906 * 16 15 14 18 18 C 1.39949 * 119.99931 * 335.31140 * 16 15 14 19 19 N 1.30824 * 120.00276 * 342.22899 * 18 16 15 20 20 Si 1.86800 * 120.00191 * 162.23310 * 18 16 15 21 21 H 1.48501 * 109.47159 * 94.66023 * 20 18 16 22 22 H 1.48499 * 109.47216 * 214.66410 * 20 18 16 23 23 H 1.48502 * 109.47008 * 334.66239 * 20 18 16 24 24 C 1.40711 * 119.51194 * 359.69948 * 15 14 13 25 25 C 1.37614 * 119.74678 * 359.97438 * 24 15 14 26 26 H 1.09005 * 109.46836 * 60.00401 * 1 2 3 27 27 H 1.09005 * 109.47253 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47957 * 300.00441 * 1 2 3 29 29 H 0.97000 * 120.00149 * 179.97438 * 2 1 3 30 30 H 1.09007 * 109.47108 * 59.99997 * 6 3 2 31 31 H 1.09007 * 109.47083 * 300.00259 * 6 3 2 32 32 H 1.09003 * 109.47112 * 60.00686 * 7 6 3 33 33 H 1.08996 * 109.47306 * 299.99784 * 7 6 3 34 34 H 0.97002 * 120.00488 * 345.00798 * 8 7 6 35 35 H 1.08001 * 119.87848 * 359.97438 * 13 12 9 36 36 H 1.08005 * 120.12838 * 180.27790 * 14 13 12 37 37 H 0.96993 * 120.00542 * 180.02562 * 19 18 16 38 38 H 1.07998 * 120.12820 * 179.97438 * 24 15 14 39 39 H 1.07998 * 119.87955 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 16 2.2929 1.4342 0.0000 4 8 1.7188 2.1703 -1.0714 5 8 3.6606 1.0492 -0.0257 6 6 1.8763 2.1975 1.5920 7 6 2.5898 3.5454 1.7136 8 7 2.2528 4.1621 2.9990 9 16 3.1556 5.4262 3.5728 10 8 2.5625 5.8167 4.8038 11 8 4.5161 5.0334 3.4558 12 6 2.9299 6.7751 2.4618 13 6 3.7860 6.9276 1.3822 14 6 3.6155 7.9740 0.5047 15 6 2.5748 8.8978 0.7137 16 6 2.3942 9.9807 -0.1774 17 1 1.4225 10.4413 -0.2777 18 6 3.4746 10.4557 -0.9295 19 7 4.6985 10.1567 -0.5773 20 14 3.1691 11.5168 -2.4362 21 1 3.2511 12.9502 -2.0571 22 1 4.1945 11.2182 -3.4681 23 1 1.8189 11.2254 -2.9814 24 6 1.7155 8.7363 1.8161 25 6 1.9005 7.6786 2.6768 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3635 0.5139 0.8899 29 1 1.9499 -0.8400 0.0004 30 1 2.1956 1.5432 2.4033 31 1 0.7985 2.3498 1.6509 32 1 2.2708 4.1999 0.9024 33 1 3.6674 3.3927 1.6549 34 1 1.5033 3.8273 3.5160 35 1 4.5872 6.2203 1.2267 36 1 4.2809 8.0885 -0.3383 37 1 5.4474 10.4862 -1.0983 38 1 0.9138 9.4396 1.9862 39 1 1.2425 7.5528 3.5239 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000221088315.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:55:56 Heat of formation + Delta-G solvation = -133.340194 kcal Electronic energy + Delta-G solvation = -26101.952215 eV Core-core repulsion = 22070.302247 eV Total energy + Delta-G solvation = -4031.649968 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 348.069 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -37.59111 -37.32538 -36.64045 -36.19235 -35.91202 -35.34700 -35.19492 -34.05064 -30.31317 -30.27134 -29.48289 -26.36626 -25.83851 -23.63436 -21.53642 -21.15167 -19.74395 -19.12466 -18.06803 -17.63414 -17.35752 -16.93261 -16.65604 -16.15590 -15.84697 -15.54556 -15.42955 -14.68835 -14.41911 -14.17906 -14.07902 -13.43237 -13.23531 -13.20074 -12.78408 -12.44813 -12.35287 -12.27474 -12.21147 -12.18805 -11.93049 -11.82189 -11.75240 -11.50376 -11.42436 -11.33026 -11.22761 -10.96768 -10.87615 -10.46420 -9.96143 -9.82725 -9.71098 -9.50170 -9.20935 -7.97913 -7.72383 -7.14909 -4.81150 -0.06516 1.16759 2.23322 2.43397 2.87467 2.89765 2.91928 2.96739 3.45522 3.65337 3.68774 3.92639 4.14138 4.22061 4.44581 4.55675 4.59005 4.95113 5.06699 5.10815 5.30140 5.32580 5.34939 5.39708 5.50355 5.88227 6.05809 6.10677 6.53979 6.66800 6.69532 6.87919 7.03162 7.13218 7.32729 7.40926 7.61757 7.75779 7.95614 8.30624 8.49995 8.63686 9.76607 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.010823 B = 0.003296 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2586.443551 B = 8493.264957 C =10124.855815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -1.124 6.124 3 S 2.617 3.383 4 O -0.945 6.945 5 O -0.950 6.950 6 C -0.641 4.641 7 C 0.133 3.867 8 N -1.120 6.120 9 S 2.690 3.310 10 O -0.982 6.982 11 O -0.980 6.980 12 C -0.791 4.791 13 C -0.020 4.020 14 C -0.181 4.181 15 C 0.140 3.860 16 C -0.433 4.433 17 H 0.088 0.912 18 C 0.072 3.928 19 N -0.763 5.763 20 Si 0.917 3.083 21 H -0.266 1.266 22 H -0.271 1.271 23 H -0.256 1.256 24 C -0.239 4.239 25 C 0.003 3.997 26 H 0.070 0.930 27 H 0.081 0.919 28 H 0.059 0.941 29 H 0.418 0.582 30 H 0.141 0.859 31 H 0.139 0.861 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.412 0.588 35 H 0.105 0.895 36 H 0.123 0.877 37 H 0.290 0.710 38 H 0.100 0.900 39 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.951 -16.547 -0.023 18.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.884 5.884 3 S 2.707 3.293 4 O -0.934 6.934 5 O -0.940 6.940 6 C -0.771 4.771 7 C 0.004 3.996 8 N -0.877 5.877 9 S 2.789 3.211 10 O -0.973 6.973 11 O -0.970 6.970 12 C -0.888 4.888 13 C -0.040 4.040 14 C -0.202 4.202 15 C 0.136 3.864 16 C -0.460 4.460 17 H 0.106 0.894 18 C -0.151 4.151 19 N -0.385 5.385 20 Si 0.740 3.260 21 H -0.191 1.191 22 H -0.195 1.195 23 H -0.180 1.180 24 C -0.259 4.259 25 C -0.017 4.017 26 H 0.089 0.911 27 H 0.100 0.900 28 H 0.078 0.922 29 H 0.252 0.748 30 H 0.159 0.841 31 H 0.157 0.843 32 H 0.103 0.897 33 H 0.111 0.889 34 H 0.245 0.755 35 H 0.123 0.877 36 H 0.141 0.859 37 H 0.102 0.898 38 H 0.118 0.882 39 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -6.581 -16.030 -0.088 17.328 hybrid contribution -0.879 0.319 -0.277 0.975 sum -7.460 -15.711 -0.365 17.396 Atomic orbital electron populations 1.21525 0.78749 1.04251 1.02123 1.55450 1.15991 1.24692 1.92229 1.04913 0.73845 0.73904 0.76676 1.93641 1.78720 1.72050 1.49003 1.93638 1.32302 1.81090 1.86987 1.30884 1.11807 1.09168 1.25218 1.20801 1.00233 0.90699 0.87856 1.55758 1.49068 1.52210 1.30642 1.01341 0.72868 0.73131 0.73747 1.93500 1.78484 1.82713 1.42554 1.93499 1.33381 1.82876 1.87261 1.29057 1.14418 1.22998 1.22315 1.20289 0.94536 0.96986 0.92201 1.21357 1.02234 0.95401 1.01180 1.17860 0.89455 0.90253 0.88855 1.19958 0.96787 1.12027 1.17214 0.89372 1.26163 0.94366 0.96241 0.98354 1.69815 0.99765 1.34062 1.34810 0.86132 0.80098 0.79754 0.79985 1.19117 1.19519 1.17954 1.21018 1.05146 1.01439 0.98315 1.20144 0.93131 0.92650 0.95775 0.91121 0.89997 0.92210 0.74829 0.84063 0.84252 0.89672 0.88944 0.75490 0.87733 0.85902 0.89850 0.88152 0.87800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.36 11.03 59.84 0.66 1.02 16 2 N -1.12 -6.96 6.08 -16.63 -0.10 -7.06 16 3 S 2.62 25.75 5.46 -107.50 -0.59 25.16 16 4 O -0.94 -12.84 17.73 -57.54 -1.02 -13.86 16 5 O -0.95 -12.61 18.08 -57.54 -1.04 -13.65 16 6 C -0.64 -5.22 6.17 37.16 0.23 -4.99 16 7 C 0.13 1.69 6.23 -4.04 -0.03 1.66 16 8 N -1.12 -15.35 6.00 -10.61 -0.06 -15.42 16 9 S 2.69 50.56 5.73 -107.50 -0.62 49.94 16 10 O -0.98 -20.19 17.26 -57.17 -0.99 -21.18 16 11 O -0.98 -20.77 16.72 -57.17 -0.96 -21.73 16 12 C -0.79 -17.23 5.97 -39.29 -0.23 -17.46 16 13 C -0.02 -0.46 9.49 -39.66 -0.38 -0.83 16 14 C -0.18 -4.53 8.70 -38.87 -0.34 -4.87 16 15 C 0.14 3.52 5.57 -106.82 -0.60 2.93 16 16 C -0.43 -10.58 9.05 -37.74 -0.34 -10.92 16 17 H 0.09 2.03 7.91 -52.49 -0.41 1.61 16 18 C 0.07 1.65 5.14 -17.34 -0.09 1.56 16 19 N -0.76 -18.32 10.97 55.55 0.61 -17.71 16 20 Si 0.92 17.03 29.59 -169.99 -5.03 12.00 16 21 H -0.27 -4.88 7.11 56.52 0.40 -4.48 16 22 H -0.27 -4.93 7.11 56.52 0.40 -4.53 16 23 H -0.26 -4.71 7.11 56.52 0.40 -4.31 16 24 C -0.24 -5.60 9.80 -38.88 -0.38 -5.98 16 25 C 0.00 0.07 9.49 -39.66 -0.38 -0.31 16 26 H 0.07 0.38 8.04 -51.93 -0.42 -0.04 16 27 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 28 H 0.06 0.16 7.73 -51.93 -0.40 -0.24 16 29 H 0.42 1.92 8.92 -34.48 -0.31 1.61 16 30 H 0.14 0.82 8.14 -51.92 -0.42 0.40 16 31 H 0.14 0.75 7.77 -51.92 -0.40 0.35 16 32 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.09 1.20 7.75 -51.93 -0.40 0.80 16 34 H 0.41 4.32 8.65 -34.47 -0.30 4.02 16 35 H 0.10 2.22 7.59 -52.49 -0.40 1.82 16 36 H 0.12 3.11 6.18 -52.48 -0.32 2.78 16 37 H 0.29 6.24 8.30 -40.82 -0.34 5.91 16 38 H 0.10 2.16 8.06 -52.49 -0.42 1.74 16 39 H 0.10 2.05 7.60 -52.49 -0.40 1.65 16 LS Contribution 360.49 15.07 5.43 5.43 Total: -1.00 -35.91 360.49 -10.82 -46.73 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -4.59 Total: 9.52 kcal Atomic # 6 Polarization: -36.32 SS G_CDS: -1.87 Total: -38.19 kcal Atomic # 7 Polarization: -40.63 SS G_CDS: 0.44 Total: -40.19 kcal Atomic # 8 Polarization: -66.41 SS G_CDS: -4.00 Total: -70.42 kcal Atomic # 14 Polarization: 17.03 SS G_CDS: -5.03 Total: 12.00 kcal Atomic # 16 Polarization: 76.31 SS G_CDS: -1.20 Total: 75.10 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -35.91 -10.82 -46.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221088315.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.607 kcal (2) G-P(sol) polarization free energy of solvation -35.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds