Wall clock time and date at job start Wed Apr 1 2020 06:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 S 1.65607 * 119.99926 * 2 1 4 4 O 1.42098 * 104.27549 * 308.92385 * 3 2 1 5 5 O 1.42104 * 104.27230 * 181.06751 * 3 2 1 6 6 C 1.81401 * 104.45075 * 64.99588 * 3 2 1 7 7 C 1.52998 * 109.46972 * 179.97438 * 6 3 2 8 8 N 1.46501 * 109.46698 * 179.97438 * 7 6 3 9 9 S 1.65602 * 119.99510 * 164.72670 * 8 7 6 10 10 O 1.42106 * 106.40261 * 178.54339 * 9 8 7 11 11 O 1.42097 * 106.40533 * 311.46033 * 9 8 7 12 12 C 1.76200 * 107.22079 * 65.00170 * 9 8 7 13 13 C 1.38630 * 119.74993 * 269.72817 * 12 9 8 14 14 C 1.37618 * 120.24695 * 179.71446 * 13 12 9 15 15 C 1.40719 * 119.74378 * 0.57642 * 14 13 12 16 16 C 1.41396 * 120.24427 * 179.67814 * 15 14 13 17 17 H 1.07991 * 120.00468 * 155.30906 * 16 15 14 18 18 C 1.39949 * 119.99931 * 335.31140 * 16 15 14 19 19 N 1.30824 * 120.00276 * 342.22899 * 18 16 15 20 20 Si 1.86800 * 120.00191 * 162.23310 * 18 16 15 21 21 H 1.48501 * 109.47159 * 94.66023 * 20 18 16 22 22 H 1.48499 * 109.47216 * 214.66410 * 20 18 16 23 23 H 1.48502 * 109.47008 * 334.66239 * 20 18 16 24 24 C 1.40711 * 119.51194 * 359.69948 * 15 14 13 25 25 C 1.37614 * 119.74678 * 359.97438 * 24 15 14 26 26 H 1.09005 * 109.46836 * 60.00401 * 1 2 3 27 27 H 1.09005 * 109.47253 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47957 * 300.00441 * 1 2 3 29 29 H 0.97000 * 120.00149 * 179.97438 * 2 1 3 30 30 H 1.09007 * 109.47108 * 59.99997 * 6 3 2 31 31 H 1.09007 * 109.47083 * 300.00259 * 6 3 2 32 32 H 1.09003 * 109.47112 * 60.00686 * 7 6 3 33 33 H 1.08996 * 109.47306 * 299.99784 * 7 6 3 34 34 H 0.97002 * 120.00488 * 345.00798 * 8 7 6 35 35 H 1.08001 * 119.87848 * 359.97438 * 13 12 9 36 36 H 1.08005 * 120.12838 * 180.27790 * 14 13 12 37 37 H 0.96993 * 120.00542 * 180.02562 * 19 18 16 38 38 H 1.07998 * 120.12820 * 179.97438 * 24 15 14 39 39 H 1.07998 * 119.87955 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 16 2.2929 1.4342 0.0000 4 8 1.7188 2.1703 -1.0714 5 8 3.6606 1.0492 -0.0257 6 6 1.8763 2.1975 1.5920 7 6 2.5898 3.5454 1.7136 8 7 2.2528 4.1621 2.9990 9 16 3.1556 5.4262 3.5728 10 8 2.5625 5.8167 4.8038 11 8 4.5161 5.0334 3.4558 12 6 2.9299 6.7751 2.4618 13 6 3.7860 6.9276 1.3822 14 6 3.6155 7.9740 0.5047 15 6 2.5748 8.8978 0.7137 16 6 2.3942 9.9807 -0.1774 17 1 1.4225 10.4413 -0.2777 18 6 3.4746 10.4557 -0.9295 19 7 4.6985 10.1567 -0.5773 20 14 3.1691 11.5168 -2.4362 21 1 3.2511 12.9502 -2.0571 22 1 4.1945 11.2182 -3.4681 23 1 1.8189 11.2254 -2.9814 24 6 1.7155 8.7363 1.8161 25 6 1.9005 7.6786 2.6768 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3635 0.5139 0.8899 29 1 1.9499 -0.8400 0.0004 30 1 2.1956 1.5432 2.4033 31 1 0.7985 2.3498 1.6509 32 1 2.2708 4.1999 0.9024 33 1 3.6674 3.3927 1.6549 34 1 1.5033 3.8273 3.5160 35 1 4.5872 6.2203 1.2267 36 1 4.2809 8.0885 -0.3383 37 1 5.4474 10.4862 -1.0983 38 1 0.9138 9.4396 1.9862 39 1 1.2425 7.5528 3.5239 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000221088315.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:55:55 Heat of formation + Delta-G solvation = -164.228617 kcal Electronic energy + Delta-G solvation = -26103.291637 eV Core-core repulsion = 22070.302247 eV Total energy + Delta-G solvation = -4032.989391 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 348.069 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -39.38758 -38.22833 -38.21856 -37.13456 -36.98777 -36.81795 -35.83894 -35.81090 -32.08176 -31.31020 -31.25274 -27.63384 -26.76136 -24.60039 -23.30572 -22.95836 -20.71100 -20.28256 -19.43198 -18.93872 -18.69053 -18.22475 -17.70818 -17.22128 -17.04320 -17.00375 -16.26680 -15.92655 -15.81931 -15.46772 -15.16579 -14.95091 -14.57137 -14.13321 -13.99022 -13.79825 -13.74749 -13.57773 -13.29372 -13.19435 -13.13706 -13.09657 -13.06385 -12.97014 -12.90949 -12.87068 -12.56438 -12.47637 -12.03986 -11.87030 -11.55568 -11.38777 -11.21161 -10.55315 -10.42177 -9.80002 -9.55959 -8.88136 -6.65785 -0.85780 -0.32266 0.47116 1.05220 1.35423 1.42046 1.52984 1.78029 2.10541 2.20258 2.51091 2.76862 2.88236 3.22363 3.32826 3.51407 3.58979 3.82738 4.23981 4.24408 4.30044 4.31635 4.40840 4.52642 4.71058 4.85034 4.87853 4.94824 4.96207 5.07491 5.10146 5.23320 5.51898 5.59071 5.75150 5.92733 6.13367 6.14345 6.16485 6.48536 6.67504 6.80514 8.07168 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.010823 B = 0.003296 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2586.443551 B = 8493.264957 C =10124.855815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -1.112 6.112 3 S 2.627 3.373 4 O -0.990 6.990 5 O -0.992 6.992 6 C -0.625 4.625 7 C 0.110 3.890 8 N -1.098 6.098 9 S 2.724 3.276 10 O -0.995 6.995 11 O -1.003 7.003 12 C -0.802 4.802 13 C -0.025 4.025 14 C -0.209 4.209 15 C 0.111 3.889 16 C -0.465 4.465 17 H 0.094 0.906 18 C 0.033 3.967 19 N -0.798 5.798 20 Si 0.992 3.008 21 H -0.258 1.258 22 H -0.264 1.264 23 H -0.253 1.253 24 C -0.257 4.257 25 C 0.000 4.000 26 H 0.056 0.944 27 H 0.106 0.894 28 H 0.084 0.916 29 H 0.427 0.573 30 H 0.174 0.826 31 H 0.176 0.824 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.432 0.568 35 H 0.115 0.885 36 H 0.109 0.891 37 H 0.298 0.702 38 H 0.113 0.887 39 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.648 -17.984 0.755 20.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.875 5.875 3 S 2.719 3.281 4 O -0.980 6.980 5 O -0.982 6.982 6 C -0.756 4.756 7 C -0.018 4.018 8 N -0.861 5.861 9 S 2.820 3.180 10 O -0.985 6.985 11 O -0.993 6.993 12 C -0.895 4.895 13 C -0.045 4.045 14 C -0.229 4.229 15 C 0.108 3.892 16 C -0.492 4.492 17 H 0.112 0.888 18 C -0.187 4.187 19 N -0.421 5.421 20 Si 0.811 3.189 21 H -0.183 1.183 22 H -0.189 1.189 23 H -0.176 1.176 24 C -0.277 4.277 25 C -0.019 4.019 26 H 0.075 0.925 27 H 0.125 0.875 28 H 0.102 0.898 29 H 0.263 0.737 30 H 0.192 0.808 31 H 0.193 0.807 32 H 0.098 0.902 33 H 0.104 0.896 34 H 0.269 0.731 35 H 0.133 0.867 36 H 0.127 0.873 37 H 0.110 0.890 38 H 0.131 0.869 39 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -8.289 -17.459 0.670 19.338 hybrid contribution -0.399 0.588 -0.384 0.808 sum -8.687 -16.871 0.286 18.979 Atomic orbital electron populations 1.21838 0.77216 1.06150 1.02745 1.55066 1.16822 1.23595 1.91989 1.04265 0.72866 0.74166 0.76826 1.93589 1.79166 1.73503 1.51723 1.93580 1.35012 1.81857 1.87756 1.30760 1.13705 1.06707 1.24461 1.21052 1.00822 0.93097 0.86833 1.55163 1.49328 1.50334 1.31269 1.00332 0.72449 0.72740 0.72528 1.93477 1.78650 1.83335 1.43074 1.93475 1.35405 1.83018 1.87361 1.29632 1.13384 1.24678 1.21757 1.20497 0.95045 0.96589 0.92396 1.21380 1.02969 0.96669 1.01867 1.18215 0.90158 0.90936 0.89933 1.20256 0.97674 1.12672 1.18548 0.88794 1.27061 0.93645 0.97189 1.00776 1.69857 1.00778 1.35268 1.36202 0.85030 0.80010 0.77939 0.75898 1.18277 1.18852 1.17599 1.21271 1.05571 1.02470 0.98378 1.20474 0.93399 0.91992 0.96067 0.92484 0.87522 0.89750 0.73716 0.80776 0.80654 0.90219 0.89569 0.73063 0.86669 0.87274 0.89038 0.86893 0.85212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.39 11.03 127.77 1.41 1.80 16 2 N -1.11 -11.31 6.08 -206.54 -1.25 -12.57 16 3 S 2.63 48.66 5.46 -56.49 -0.31 48.35 16 4 O -0.99 -26.92 17.73 -127.65 -2.26 -29.18 16 5 O -0.99 -26.13 18.08 -127.65 -2.31 -28.44 16 6 C -0.62 -8.07 6.17 71.98 0.44 -7.63 16 7 C 0.11 2.58 6.23 86.38 0.54 3.12 16 8 N -1.10 -26.98 6.00 -187.49 -1.12 -28.11 16 9 S 2.72 97.77 5.73 -56.49 -0.32 97.45 16 10 O -0.99 -38.59 17.26 -128.00 -2.21 -40.80 16 11 O -1.00 -41.38 16.72 -128.00 -2.14 -43.52 16 12 C -0.80 -34.59 5.97 22.46 0.13 -34.46 16 13 C -0.03 -1.19 9.49 22.22 0.21 -0.98 16 14 C -0.21 -10.86 8.70 22.73 0.20 -10.66 16 15 C 0.11 5.80 5.57 -21.29 -0.12 5.68 16 16 C -0.46 -23.39 9.05 23.46 0.21 -23.18 16 17 H 0.09 4.42 7.91 -2.92 -0.02 4.40 16 18 C 0.03 1.54 5.14 85.26 0.44 1.97 16 19 N -0.80 -39.58 10.97 21.83 0.24 -39.34 16 20 Si 0.99 35.09 29.59 68.60 2.03 37.12 16 21 H -0.26 -8.75 7.11 99.48 0.71 -8.05 16 22 H -0.26 -8.98 7.11 99.48 0.71 -8.27 16 23 H -0.25 -8.70 7.11 99.48 0.71 -8.00 16 24 C -0.26 -12.19 9.80 22.73 0.22 -11.96 16 25 C 0.00 0.02 9.49 22.22 0.21 0.23 16 26 H 0.06 0.52 8.04 -2.38 -0.02 0.50 16 27 H 0.11 0.14 8.14 -2.38 -0.02 0.12 16 28 H 0.08 0.10 7.73 -2.39 -0.02 0.08 16 29 H 0.43 3.02 8.92 -96.74 -0.86 2.16 16 30 H 0.17 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.18 1.03 7.77 -2.39 -0.02 1.02 16 32 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.09 2.15 7.75 -2.39 -0.02 2.13 16 34 H 0.43 7.27 8.65 -96.74 -0.84 6.43 16 35 H 0.12 5.02 7.59 -2.91 -0.02 5.00 16 36 H 0.11 5.85 6.18 -2.91 -0.02 5.83 16 37 H 0.30 13.19 8.30 -92.71 -0.77 12.42 16 38 H 0.11 4.90 8.06 -2.91 -0.02 4.87 16 39 H 0.13 4.87 7.60 -2.91 -0.02 4.85 16 Total: -1.00 -80.13 360.49 -6.35 -86.48 By element: Atomic # 1 Polarization: 29.21 SS G_CDS: -0.59 Total: 28.62 kcal Atomic # 6 Polarization: -79.97 SS G_CDS: 3.90 Total: -76.07 kcal Atomic # 7 Polarization: -77.87 SS G_CDS: -2.14 Total: -80.01 kcal Atomic # 8 Polarization: -133.02 SS G_CDS: -8.92 Total: -141.94 kcal Atomic # 14 Polarization: 35.09 SS G_CDS: 2.03 Total: 37.12 kcal Atomic # 16 Polarization: 146.43 SS G_CDS: -0.63 Total: 145.80 kcal Total: -80.13 -6.35 -86.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221088315.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.748 kcal (2) G-P(sol) polarization free energy of solvation -80.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds