Wall clock time and date at job start Wed Apr 1 2020 06:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 S 1.65599 * 119.99787 * 2 1 4 4 O 1.42099 * 106.40182 * 311.46049 * 3 2 1 5 5 O 1.42100 * 106.39963 * 178.54107 * 3 2 1 6 6 C 1.76200 * 107.22187 * 64.99880 * 3 2 1 7 7 C 1.38254 * 119.99886 * 89.99943 * 6 3 2 8 8 C 1.38212 * 120.00038 * 180.02562 * 7 6 3 9 9 C 1.38254 * 119.99972 * 359.95331 * 8 7 6 10 10 C 1.38215 * 119.99996 * 359.97438 * 9 8 7 11 11 S 1.76197 * 119.99915 * 179.97438 * 10 9 8 12 12 O 1.42100 * 106.40432 * 336.46423 * 11 10 9 13 13 O 1.42100 * 106.40250 * 203.53896 * 11 10 9 14 14 N 1.65606 * 107.21394 * 90.00244 * 11 10 9 15 15 C 1.46497 * 120.00213 * 64.99953 * 14 11 10 16 16 H 1.09003 * 109.46733 * 335.00276 * 15 14 11 17 17 C 1.53000 * 109.47145 * 94.99840 * 15 14 11 18 18 C 1.50694 * 109.47115 * 214.99914 * 15 14 11 19 19 H 1.08000 * 120.00563 * 359.97438 * 18 15 14 20 20 C 1.37885 * 119.99902 * 180.02562 * 18 15 14 21 21 N 1.31516 * 119.99913 * 359.97438 * 20 18 15 22 22 Si 1.86798 * 119.99766 * 179.97438 * 20 18 15 23 23 H 1.48506 * 109.46985 * 179.97438 * 22 20 18 24 24 H 1.48494 * 109.47276 * 299.99832 * 22 20 18 25 25 H 1.48498 * 109.47150 * 60.00043 * 22 20 18 26 26 C 1.38213 * 120.00075 * 270.16810 * 6 3 2 27 27 H 1.08998 * 109.46993 * 299.99996 * 1 2 3 28 28 H 1.09000 * 109.47346 * 60.00356 * 1 2 3 29 29 H 1.08998 * 109.46894 * 180.02562 * 1 2 3 30 30 H 0.96993 * 119.99474 * 179.97438 * 2 1 3 31 31 H 1.07999 * 120.00112 * 359.97438 * 7 6 3 32 32 H 1.08001 * 120.00286 * 179.97438 * 8 7 6 33 33 H 1.08004 * 120.00269 * 179.97438 * 9 8 7 34 34 H 0.97006 * 119.99827 * 244.99362 * 14 11 10 35 35 H 1.08997 * 109.47359 * 180.02562 * 17 15 14 36 36 H 1.09007 * 109.47356 * 300.00099 * 17 15 14 37 37 H 1.09000 * 109.47156 * 59.99824 * 17 15 14 38 38 H 0.97001 * 119.99646 * 179.97438 * 21 20 18 39 39 H 1.08003 * 120.00180 * 0.04145 * 26 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4342 0.0000 4 8 1.7119 2.2329 -1.0216 5 8 3.6738 1.1003 0.0347 6 6 1.9378 2.2416 1.5253 7 6 2.7382 2.0158 2.6297 8 6 2.4593 2.6487 3.8263 9 6 1.3805 3.5084 3.9186 10 6 0.5812 3.7352 2.8141 11 16 -0.7942 4.8303 2.9319 12 8 -1.1551 4.8749 4.3056 13 8 -1.6978 4.4517 1.9027 14 7 -0.2495 6.3449 2.5422 15 6 0.2345 6.6232 1.1878 16 1 0.5801 5.6973 0.7280 17 6 -0.9021 7.2146 0.3515 18 6 1.3740 7.6071 1.2539 19 1 1.7044 7.9875 2.2092 20 6 1.9942 8.0227 0.0946 21 7 1.5916 7.5599 -1.0688 22 14 3.4062 9.2428 0.1765 23 1 3.8970 9.5249 -1.1964 24 1 2.9350 10.5039 0.8031 25 1 4.5097 8.6692 0.9879 26 6 0.8569 3.0979 1.6186 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.9499 -0.8400 0.0004 31 1 3.5809 1.3442 2.5577 32 1 3.0843 2.4721 4.6892 33 1 1.1622 4.0027 4.8538 34 1 -0.2510 7.0478 3.2107 35 1 -0.5421 7.4213 -0.6563 36 1 -1.7263 6.5029 0.3037 37 1 -1.2477 8.1405 0.8113 38 1 2.0276 7.8526 -1.8843 39 1 0.2296 3.2717 0.7568 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263679172.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:46:58 Heat of formation + Delta-G solvation = -117.846029 kcal Electronic energy + Delta-G solvation = -27423.570046 eV Core-core repulsion = 23392.591956 eV Total energy + Delta-G solvation = -4030.978091 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 348.069 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.25340 -37.27082 -36.86675 -35.85658 -35.50146 -35.42904 -35.16298 -32.22436 -31.59315 -31.36199 -28.31477 -26.17553 -25.21796 -23.65112 -23.33357 -20.99462 -20.08172 -19.11973 -18.22378 -17.73596 -17.45446 -16.47820 -16.31956 -16.13639 -15.97572 -15.64693 -15.15328 -14.68714 -14.39941 -14.17883 -13.91566 -13.60519 -13.26295 -12.97155 -12.67562 -12.52233 -12.45070 -12.20639 -12.07563 -11.95622 -11.76963 -11.73983 -11.73552 -11.60387 -11.17932 -11.09177 -10.97864 -10.63291 -10.61220 -10.29796 -10.13489 -9.85380 -9.72372 -9.37135 -9.21923 -8.65221 -8.34571 -6.12373 -4.22215 0.26258 0.54772 0.83342 0.98583 2.83141 3.18016 3.26026 3.31992 3.32637 3.59329 3.69789 4.14320 4.22944 4.34590 4.59337 4.73770 4.83985 4.84831 4.88189 5.18676 5.24280 5.27930 5.40414 5.53620 5.60906 5.64741 5.76630 5.91273 5.98716 6.25663 6.57836 6.70943 6.79943 7.03580 7.07322 7.55363 7.67447 7.76425 8.02497 8.24521 8.80076 9.44429 10.92977 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.009665 B = 0.005152 C = 0.004196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2896.414860 B = 5433.448204 C = 6671.291548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -1.122 6.122 3 S 2.695 3.305 4 O -0.937 6.937 5 O -0.959 6.959 6 C -0.699 4.699 7 C 0.027 3.973 8 C -0.162 4.162 9 C 0.036 3.964 10 C -0.687 4.687 11 S 2.687 3.313 12 O -0.979 6.979 13 O -0.957 6.957 14 N -1.096 6.096 15 C 0.272 3.728 16 H 0.041 0.959 17 C -0.158 4.158 18 C -0.532 4.532 19 H 0.064 0.936 20 C 0.066 3.934 21 N -0.881 5.881 22 Si 0.899 3.101 23 H -0.285 1.285 24 H -0.276 1.276 25 H -0.277 1.277 26 C 0.085 3.915 27 H 0.061 0.939 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.417 0.583 31 H 0.145 0.855 32 H 0.140 0.860 33 H 0.147 0.853 34 H 0.411 0.589 35 H 0.093 0.907 36 H 0.026 0.974 37 H 0.033 0.967 38 H 0.267 0.733 39 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.444 -15.135 6.573 16.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.882 5.882 3 S 2.782 3.218 4 O -0.927 6.927 5 O -0.949 6.949 6 C -0.786 4.786 7 C 0.007 3.993 8 C -0.182 4.182 9 C 0.017 3.983 10 C -0.772 4.772 11 S 2.774 3.226 12 O -0.969 6.969 13 O -0.947 6.947 14 N -0.858 5.858 15 C 0.168 3.832 16 H 0.059 0.941 17 C -0.218 4.218 18 C -0.572 4.572 19 H 0.082 0.918 20 C -0.138 4.138 21 N -0.518 5.518 22 Si 0.727 3.273 23 H -0.211 1.211 24 H -0.201 1.201 25 H -0.203 1.203 26 C 0.064 3.936 27 H 0.080 0.920 28 H 0.093 0.907 29 H 0.102 0.898 30 H 0.251 0.749 31 H 0.162 0.838 32 H 0.158 0.842 33 H 0.164 0.836 34 H 0.245 0.755 35 H 0.112 0.888 36 H 0.045 0.955 37 H 0.052 0.948 38 H 0.077 0.923 39 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -0.837 -15.044 5.774 16.136 hybrid contribution 1.560 0.548 0.922 1.893 sum 0.723 -14.496 6.696 15.984 Atomic orbital electron populations 1.21570 0.78180 1.04272 1.02738 1.55379 1.16364 1.24311 1.92097 1.02043 0.73025 0.72762 0.73960 1.93669 1.78271 1.67737 1.53003 1.93583 1.30632 1.83544 1.87137 1.31046 1.07907 1.17462 1.22178 1.21138 0.94213 0.92928 0.90989 1.21368 0.98884 0.99451 0.98491 1.21237 0.89857 0.90470 0.96761 1.31452 1.24714 1.20426 1.00566 1.02052 0.73932 0.73533 0.73076 1.93528 1.82275 1.86981 1.34132 1.93582 1.59389 1.83234 1.58472 1.55566 1.82532 1.25213 1.22490 1.18603 0.92464 0.97086 0.75027 0.94095 1.22242 0.97079 0.98698 1.03758 1.21199 1.16007 1.26589 0.93365 0.91820 1.24929 0.97251 0.96353 0.95273 1.69862 1.40991 1.43182 0.97742 0.86547 0.82170 0.81353 0.77258 1.21059 1.20122 1.20266 1.20789 0.90905 0.85861 0.96003 0.92004 0.90712 0.89810 0.74897 0.83767 0.84191 0.83564 0.75479 0.88807 0.95476 0.94812 0.92301 0.82429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.65 11.14 59.85 0.67 1.32 16 2 N -1.12 -10.41 6.19 -16.63 -0.10 -10.51 16 3 S 2.69 37.77 5.74 -107.50 -0.62 37.15 16 4 O -0.94 -17.03 17.01 -57.17 -0.97 -18.00 16 5 O -0.96 -14.85 17.28 -57.17 -0.99 -15.83 16 6 C -0.70 -10.29 5.95 -39.58 -0.24 -10.52 16 7 C 0.03 0.34 9.52 -39.58 -0.38 -0.04 16 8 C -0.16 -1.95 10.05 -39.59 -0.40 -2.34 16 9 C 0.04 0.50 9.52 -39.58 -0.38 0.13 16 10 C -0.69 -11.41 5.81 -39.58 -0.23 -11.64 16 11 S 2.69 48.69 5.65 -107.50 -0.61 48.09 16 12 O -0.98 -18.02 17.28 -57.17 -0.99 -19.01 16 13 O -0.96 -19.39 16.54 -57.17 -0.95 -20.34 16 14 N -1.10 -21.53 5.46 -5.88 -0.03 -21.56 16 15 C 0.27 6.50 2.76 -69.09 -0.19 6.31 16 16 H 0.04 1.04 7.25 -51.93 -0.38 0.66 16 17 C -0.16 -3.79 9.29 37.16 0.35 -3.44 16 18 C -0.53 -13.72 8.76 -34.44 -0.30 -14.02 16 19 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 20 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 21 N -0.88 -24.43 11.32 55.43 0.63 -23.80 16 22 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 23 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 26 C 0.08 1.43 8.40 -39.58 -0.33 1.09 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.67 8.10 -51.93 -0.42 0.25 16 29 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.42 2.68 8.96 -34.47 -0.31 2.37 16 31 H 0.14 1.41 7.62 -52.49 -0.40 1.01 16 32 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 33 H 0.15 1.73 7.62 -52.48 -0.40 1.33 16 34 H 0.41 7.21 8.83 -34.48 -0.30 6.91 16 35 H 0.09 2.44 6.07 -51.93 -0.32 2.12 16 36 H 0.03 0.60 7.64 -51.93 -0.40 0.21 16 37 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 39 H 0.16 2.70 7.18 -52.48 -0.38 2.33 16 LS Contribution 357.69 15.07 5.39 5.39 Total: -1.00 -35.58 357.69 -10.32 -45.90 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -4.53 Total: 8.40 kcal Atomic # 6 Polarization: -29.97 SS G_CDS: -1.52 Total: -31.50 kcal Atomic # 7 Polarization: -56.37 SS G_CDS: 0.49 Total: -55.88 kcal Atomic # 8 Polarization: -69.29 SS G_CDS: -3.89 Total: -73.18 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Atomic # 16 Polarization: 86.46 SS G_CDS: -1.22 Total: 85.24 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -35.58 -10.32 -45.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263679172.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.947 kcal (2) G-P(sol) polarization free energy of solvation -35.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds