Wall clock time and date at job start Wed Apr 1 2020 06:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 S 1.65599 * 119.99787 * 2 1 4 4 O 1.42099 * 106.40182 * 311.46049 * 3 2 1 5 5 O 1.42100 * 106.39963 * 178.54107 * 3 2 1 6 6 C 1.76200 * 107.22187 * 64.99880 * 3 2 1 7 7 C 1.38254 * 119.99886 * 89.99943 * 6 3 2 8 8 C 1.38212 * 120.00038 * 180.02562 * 7 6 3 9 9 C 1.38254 * 119.99972 * 359.95331 * 8 7 6 10 10 C 1.38215 * 119.99996 * 359.97438 * 9 8 7 11 11 S 1.76197 * 119.99915 * 179.97438 * 10 9 8 12 12 O 1.42100 * 106.40432 * 336.46423 * 11 10 9 13 13 O 1.42100 * 106.40250 * 203.53896 * 11 10 9 14 14 N 1.65606 * 107.21394 * 90.00244 * 11 10 9 15 15 C 1.46497 * 120.00213 * 64.99953 * 14 11 10 16 16 H 1.09003 * 109.46733 * 335.00276 * 15 14 11 17 17 C 1.53000 * 109.47145 * 94.99840 * 15 14 11 18 18 C 1.50694 * 109.47115 * 214.99914 * 15 14 11 19 19 H 1.08000 * 120.00563 * 359.97438 * 18 15 14 20 20 C 1.37885 * 119.99902 * 180.02562 * 18 15 14 21 21 N 1.31516 * 119.99913 * 359.97438 * 20 18 15 22 22 Si 1.86798 * 119.99766 * 179.97438 * 20 18 15 23 23 H 1.48506 * 109.46985 * 179.97438 * 22 20 18 24 24 H 1.48494 * 109.47276 * 299.99832 * 22 20 18 25 25 H 1.48498 * 109.47150 * 60.00043 * 22 20 18 26 26 C 1.38213 * 120.00075 * 270.16810 * 6 3 2 27 27 H 1.08998 * 109.46993 * 299.99996 * 1 2 3 28 28 H 1.09000 * 109.47346 * 60.00356 * 1 2 3 29 29 H 1.08998 * 109.46894 * 180.02562 * 1 2 3 30 30 H 0.96993 * 119.99474 * 179.97438 * 2 1 3 31 31 H 1.07999 * 120.00112 * 359.97438 * 7 6 3 32 32 H 1.08001 * 120.00286 * 179.97438 * 8 7 6 33 33 H 1.08004 * 120.00269 * 179.97438 * 9 8 7 34 34 H 0.97006 * 119.99827 * 244.99362 * 14 11 10 35 35 H 1.08997 * 109.47359 * 180.02562 * 17 15 14 36 36 H 1.09007 * 109.47356 * 300.00099 * 17 15 14 37 37 H 1.09000 * 109.47156 * 59.99824 * 17 15 14 38 38 H 0.97001 * 119.99646 * 179.97438 * 21 20 18 39 39 H 1.08003 * 120.00180 * 0.04145 * 26 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4342 0.0000 4 8 1.7119 2.2329 -1.0216 5 8 3.6738 1.1003 0.0347 6 6 1.9378 2.2416 1.5253 7 6 2.7382 2.0158 2.6297 8 6 2.4593 2.6487 3.8263 9 6 1.3805 3.5084 3.9186 10 6 0.5812 3.7352 2.8141 11 16 -0.7942 4.8303 2.9319 12 8 -1.1551 4.8749 4.3056 13 8 -1.6978 4.4517 1.9027 14 7 -0.2495 6.3449 2.5422 15 6 0.2345 6.6232 1.1878 16 1 0.5801 5.6973 0.7280 17 6 -0.9021 7.2146 0.3515 18 6 1.3740 7.6071 1.2539 19 1 1.7044 7.9875 2.2092 20 6 1.9942 8.0227 0.0946 21 7 1.5916 7.5599 -1.0688 22 14 3.4062 9.2428 0.1765 23 1 3.8970 9.5249 -1.1964 24 1 2.9350 10.5039 0.8031 25 1 4.5097 8.6692 0.9879 26 6 0.8569 3.0979 1.6186 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.9499 -0.8400 0.0004 31 1 3.5809 1.3442 2.5577 32 1 3.0843 2.4721 4.6892 33 1 1.1622 4.0027 4.8538 34 1 -0.2510 7.0478 3.2107 35 1 -0.5421 7.4213 -0.6563 36 1 -1.7263 6.5029 0.3037 37 1 -1.2477 8.1405 0.8113 38 1 2.0276 7.8526 -1.8843 39 1 0.2296 3.2717 0.7568 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263679172.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:46:57 Heat of formation + Delta-G solvation = -148.176183 kcal Electronic energy + Delta-G solvation = -27424.885260 eV Core-core repulsion = 23392.591956 eV Total energy + Delta-G solvation = -4032.293305 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 348.069 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.34950 -38.49622 -38.38148 -37.28586 -37.09209 -36.97771 -35.98287 -34.14575 -32.71053 -32.45585 -30.16470 -27.24142 -26.93055 -24.76636 -24.46911 -22.87565 -21.26098 -20.36361 -19.55841 -19.10901 -18.78788 -17.95244 -17.53250 -17.40750 -17.22220 -17.06363 -16.66297 -16.13363 -15.62454 -15.30991 -15.15841 -14.76947 -14.55057 -14.34499 -14.09964 -13.86890 -13.67596 -13.57228 -13.51823 -13.34275 -13.31110 -13.21769 -13.12840 -13.02475 -12.81142 -12.60001 -12.43377 -12.24531 -12.20906 -12.02747 -11.88355 -11.13957 -10.91637 -10.63194 -10.60438 -10.43054 -10.15637 -8.13561 -6.29458 -0.82235 -0.65296 -0.47732 -0.21227 1.44981 1.45597 1.53569 1.79266 2.02647 2.21040 2.44469 2.59423 2.72589 3.10195 3.15908 3.37008 3.61047 3.77366 3.84416 4.17321 4.19808 4.29037 4.46855 4.56944 4.58717 4.66618 4.80340 4.83813 4.89387 4.95513 4.95768 5.09286 5.14499 5.55293 5.57368 5.72300 6.02627 6.05976 6.08715 6.39000 6.81643 7.40665 8.91358 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.009665 B = 0.005152 C = 0.004196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2896.414860 B = 5433.448204 C = 6671.291548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -1.101 6.101 3 S 2.709 3.291 4 O -0.988 6.988 5 O -0.975 6.975 6 C -0.705 4.705 7 C 0.028 3.972 8 C -0.149 4.149 9 C 0.027 3.973 10 C -0.701 4.701 11 S 2.703 3.297 12 O -0.980 6.980 13 O -0.986 6.986 14 N -1.097 6.097 15 C 0.275 3.725 16 H 0.021 0.979 17 C -0.154 4.154 18 C -0.541 4.541 19 H 0.073 0.927 20 C 0.016 3.984 21 N -0.913 5.913 22 Si 0.960 3.040 23 H -0.287 1.287 24 H -0.266 1.266 25 H -0.272 1.272 26 C 0.059 3.941 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.122 0.878 30 H 0.434 0.566 31 H 0.178 0.822 32 H 0.188 0.812 33 H 0.169 0.831 34 H 0.420 0.580 35 H 0.070 0.930 36 H 0.030 0.970 37 H 0.041 0.959 38 H 0.265 0.735 39 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.098 -16.294 8.901 18.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.866 5.866 3 S 2.797 3.203 4 O -0.978 6.978 5 O -0.965 6.965 6 C -0.793 4.793 7 C 0.009 3.991 8 C -0.168 4.168 9 C 0.008 3.992 10 C -0.789 4.789 11 S 2.793 3.207 12 O -0.970 6.970 13 O -0.976 6.976 14 N -0.859 5.859 15 C 0.170 3.830 16 H 0.039 0.961 17 C -0.213 4.213 18 C -0.580 4.580 19 H 0.091 0.909 20 C -0.185 4.185 21 N -0.552 5.552 22 Si 0.785 3.215 23 H -0.213 1.213 24 H -0.191 1.191 25 H -0.197 1.197 26 C 0.038 3.962 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.141 0.859 30 H 0.272 0.728 31 H 0.195 0.805 32 H 0.205 0.795 33 H 0.186 0.814 34 H 0.255 0.745 35 H 0.088 0.912 36 H 0.049 0.951 37 H 0.060 0.940 38 H 0.074 0.926 39 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 0.678 -16.184 8.126 18.122 hybrid contribution 1.069 0.764 0.268 1.341 sum 1.746 -15.420 8.394 17.643 Atomic orbital electron populations 1.21820 0.77196 1.06637 1.02219 1.54913 1.16763 1.23357 1.91536 1.01322 0.72538 0.73075 0.73347 1.93613 1.79101 1.69796 1.55266 1.93546 1.31770 1.83854 1.87293 1.31089 1.07671 1.17353 1.23154 1.21672 0.94245 0.92823 0.90378 1.21913 0.97975 0.97294 0.99627 1.21654 0.90003 0.90996 0.96573 1.31078 1.25106 1.20961 1.01799 1.01330 0.73903 0.72999 0.72439 1.93518 1.82652 1.87001 1.33820 1.93540 1.61222 1.83407 1.59420 1.55357 1.82504 1.26737 1.21258 1.18296 0.92081 0.95859 0.76767 0.96113 1.22151 0.97289 0.99212 1.02668 1.21563 1.16275 1.26497 0.93684 0.90914 1.25734 0.99663 0.98092 0.95018 1.70011 1.42272 1.44580 0.98292 0.85584 0.79329 0.79500 0.77081 1.21312 1.19082 1.19670 1.20724 0.92131 0.87588 0.95768 0.92043 0.91989 0.85908 0.72845 0.80477 0.79521 0.81382 0.74456 0.91154 0.95058 0.93977 0.92555 0.84398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.06 11.14 127.77 1.42 2.48 16 2 N -1.10 -19.18 6.19 -206.53 -1.28 -20.45 16 3 S 2.71 75.88 5.74 -56.49 -0.32 75.55 16 4 O -0.99 -37.78 17.01 -128.00 -2.18 -39.95 16 5 O -0.97 -29.24 17.28 -128.00 -2.21 -31.45 16 6 C -0.71 -20.29 5.95 22.27 0.13 -20.15 16 7 C 0.03 0.62 9.52 22.27 0.21 0.83 16 8 C -0.15 -2.97 10.05 22.27 0.22 -2.75 16 9 C 0.03 0.69 9.52 22.27 0.21 0.90 16 10 C -0.70 -23.04 5.81 22.27 0.13 -22.91 16 11 S 2.70 98.55 5.65 -56.49 -0.32 98.23 16 12 O -0.98 -35.15 17.28 -128.00 -2.21 -37.36 16 13 O -0.99 -41.34 16.54 -128.00 -2.12 -43.46 16 14 N -1.10 -43.36 5.46 -172.53 -0.94 -44.30 16 15 C 0.28 13.46 2.76 44.24 0.12 13.58 16 16 H 0.02 1.11 7.25 -2.39 -0.02 1.10 16 17 C -0.15 -7.58 9.29 71.98 0.67 -6.91 16 18 C -0.54 -27.97 8.76 25.60 0.22 -27.75 16 19 H 0.07 3.54 7.81 -2.91 -0.02 3.51 16 20 C 0.02 0.83 5.30 84.66 0.45 1.28 16 21 N -0.91 -52.03 11.32 21.45 0.24 -51.79 16 22 Si 0.96 42.21 29.54 68.60 2.03 44.23 16 23 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 24 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 25 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 26 C 0.06 2.01 8.40 22.27 0.19 2.20 16 27 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.06 1.15 8.10 -2.39 -0.02 1.13 16 29 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.43 4.66 8.96 -96.75 -0.87 3.79 16 31 H 0.18 2.72 7.62 -2.91 -0.02 2.69 16 32 H 0.19 1.97 8.06 -2.91 -0.02 1.95 16 33 H 0.17 3.44 7.62 -2.91 -0.02 3.42 16 34 H 0.42 14.58 8.83 -96.74 -0.85 13.73 16 35 H 0.07 3.81 6.07 -2.39 -0.01 3.79 16 36 H 0.03 1.45 7.64 -2.38 -0.02 1.44 16 37 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.27 14.49 8.31 -92.71 -0.77 13.72 16 39 H 0.14 5.15 7.18 -2.91 -0.02 5.13 16 Total: -1.00 -78.09 357.69 -5.94 -84.03 By element: Atomic # 1 Polarization: 26.53 SS G_CDS: -0.61 Total: 25.92 kcal Atomic # 6 Polarization: -63.18 SS G_CDS: 3.98 Total: -59.20 kcal Atomic # 7 Polarization: -114.56 SS G_CDS: -1.98 Total: -116.54 kcal Atomic # 8 Polarization: -143.51 SS G_CDS: -8.72 Total: -152.23 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.23 kcal Atomic # 16 Polarization: 174.43 SS G_CDS: -0.64 Total: 173.79 kcal Total: -78.09 -5.94 -84.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263679172.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.149 kcal (2) G-P(sol) polarization free energy of solvation -78.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds