Wall clock time and date at job start Wed Apr 1 2020 05:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.46954 * 2 1 4 4 C 1.50701 * 109.46978 * 119.99506 * 2 1 3 5 5 H 1.07999 * 119.99666 * 120.00188 * 4 2 1 6 6 C 1.37875 * 120.00460 * 299.99947 * 4 2 1 7 7 N 1.31512 * 120.00051 * 180.02562 * 6 4 2 8 8 Si 1.86805 * 119.99871 * 0.02562 * 6 4 2 9 9 H 1.48504 * 109.46675 * 89.99636 * 8 6 4 10 10 H 1.48499 * 109.47171 * 209.99660 * 8 6 4 11 11 H 1.48501 * 109.46888 * 330.00141 * 8 6 4 12 12 N 1.46496 * 109.47318 * 239.99769 * 2 1 3 13 13 S 1.65605 * 119.99826 * 96.24581 * 12 2 1 14 14 O 1.42094 * 106.40580 * 307.65915 * 13 12 2 15 15 O 1.42100 * 106.39740 * 174.73798 * 13 12 2 16 16 C 1.76202 * 107.21617 * 61.20247 * 13 12 2 17 17 C 1.38387 * 119.84649 * 246.65303 * 16 13 12 18 18 C 1.37925 * 120.15373 * 179.97438 * 17 16 13 19 19 C 1.39654 * 119.84242 * 0.02562 * 18 17 16 20 20 C 1.43199 * 120.14644 * 179.97438 * 19 18 17 21 21 N 7.71131 * 144.04458 * 351.52907 * 2 1 3 22 22 C 1.39613 * 119.70089 * 0.27252 * 19 18 17 23 23 C 1.37966 * 119.84694 * 359.47244 * 22 19 18 24 24 C 1.50697 * 119.92549 * 180.23158 * 23 22 19 25 25 F 1.39897 * 109.47449 * 6.38173 * 24 23 22 26 26 F 1.39907 * 109.47130 * 126.38384 * 24 23 22 27 27 F 1.39900 * 109.47249 * 246.37902 * 24 23 22 28 28 H 1.08998 * 109.47330 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47359 * 300.00261 * 1 2 3 30 30 H 1.09004 * 109.47293 * 60.00401 * 1 2 3 31 31 H 0.97005 * 119.99640 * 180.02562 * 7 6 4 32 32 H 0.97000 * 119.99847 * 276.25472 * 12 2 1 33 33 H 1.08008 * 119.92111 * 359.97438 * 17 16 13 34 34 H 1.07993 * 120.07486 * 179.97438 * 18 17 16 35 35 H 1.08001 * 120.07267 * 179.72437 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1315 6 6 1.6993 -0.2392 2.4828 7 7 2.1381 -0.8589 3.5566 8 14 0.6247 1.2792 2.6541 9 1 -0.8029 0.8727 2.6998 10 1 0.9758 1.9953 3.9068 11 1 0.8470 2.1765 1.4919 12 7 2.0184 -0.6906 -1.1961 13 16 2.4415 0.1797 -2.5400 14 8 1.3350 1.0195 -2.8390 15 8 2.9834 -0.7513 -3.4666 16 6 3.7645 1.2466 -2.0751 17 6 3.5714 2.6168 -2.0596 18 6 4.6025 3.4577 -1.6963 19 6 5.8438 2.9234 -1.3441 20 6 6.9190 3.7905 -0.9663 21 7 7.7721 4.4783 -0.6670 22 6 6.0335 1.5404 -1.3679 23 6 4.9919 0.7106 -1.7282 24 6 5.1931 -0.7827 -1.7495 25 9 6.4557 -1.0906 -1.2316 26 9 4.2069 -1.3974 -0.9704 27 9 5.1034 -1.2467 -3.0663 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.9034 -0.5276 4.4376 32 1 2.0937 -1.6577 -1.2009 33 1 2.6110 3.0286 -2.3327 34 1 4.4505 4.5268 -1.6851 35 1 6.9922 1.1210 -1.1009 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263735476.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:49 Heat of formation + Delta-G solvation = -132.200432 kcal Electronic energy + Delta-G solvation = -30086.831780 eV Core-core repulsion = 25377.930544 eV Total energy + Delta-G solvation = -4708.901236 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.054 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.05394 -47.60961 -47.37679 -39.99486 -37.08804 -36.87867 -35.82380 -35.69057 -32.71341 -32.30390 -32.02396 -29.33802 -26.34380 -25.18952 -24.95116 -22.67097 -21.18231 -19.86604 -19.60891 -18.49925 -18.45753 -17.91726 -17.35911 -16.90845 -16.35653 -16.11173 -15.71009 -14.94636 -14.80548 -14.56118 -14.40781 -14.26553 -14.13876 -13.94150 -13.74789 -13.51835 -13.43263 -13.27586 -13.18248 -13.10603 -12.95473 -12.62702 -12.45415 -12.28990 -11.93032 -11.84201 -11.73726 -11.67847 -11.34750 -11.05789 -10.75834 -10.27908 -9.83637 -9.70391 -9.64004 -9.47131 -8.91275 -8.58039 -6.24293 -4.26555 -0.21257 0.54493 0.57397 2.17823 2.22317 2.56285 3.15201 3.15542 3.22255 3.24463 3.27987 3.32222 3.66351 3.80093 3.92758 4.21053 4.23476 4.38891 4.48730 4.69780 4.89901 4.95594 5.06514 5.23495 5.32691 5.47444 5.58346 5.84569 6.07057 6.12938 6.42263 6.49730 6.86852 7.01168 7.13873 7.32343 7.73401 8.33296 8.81359 9.34571 10.87869 Molecular weight = 348.05amu Principal moments of inertia in cm(-1) A = 0.009741 B = 0.006032 C = 0.005179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2873.763223 B = 4640.931263 C = 5405.483022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.246 3.754 3 H 0.037 0.963 4 C -0.525 4.525 5 H 0.088 0.912 6 C 0.077 3.923 7 N -0.889 5.889 8 Si 0.877 3.123 9 H -0.274 1.274 10 H -0.295 1.295 11 H -0.264 1.264 12 N -1.080 6.080 13 S 2.669 3.331 14 O -0.951 6.951 15 O -0.950 6.950 16 C -0.604 4.604 17 C -0.022 4.022 18 C -0.062 4.062 19 C 0.021 3.979 20 C 0.252 3.748 21 N -0.394 5.394 22 C -0.046 4.046 23 C -0.077 4.077 24 C 0.480 3.520 25 F -0.173 7.173 26 F -0.145 7.145 27 F -0.144 7.144 28 H 0.061 0.939 29 H 0.048 0.952 30 H 0.046 0.954 31 H 0.267 0.733 32 H 0.420 0.580 33 H 0.166 0.834 34 H 0.153 0.847 35 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.239 5.275 -11.467 13.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.141 3.859 3 H 0.055 0.945 4 C -0.564 4.564 5 H 0.106 0.894 6 C -0.127 4.127 7 N -0.526 5.526 8 Si 0.707 3.293 9 H -0.201 1.201 10 H -0.222 1.222 11 H -0.189 1.189 12 N -0.845 5.845 13 S 2.753 3.247 14 O -0.940 6.940 15 O -0.940 6.940 16 C -0.687 4.687 17 C -0.041 4.041 18 C -0.083 4.083 19 C 0.018 3.982 20 C -0.064 4.064 21 N -0.069 5.069 22 C -0.067 4.067 23 C -0.079 4.079 24 C 0.425 3.575 25 F -0.154 7.154 26 F -0.126 7.126 27 F -0.125 7.125 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.258 0.742 33 H 0.184 0.816 34 H 0.170 0.830 35 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 5.231 6.461 -11.612 14.281 hybrid contribution -0.261 0.257 0.881 0.954 sum 4.970 6.718 -10.730 13.600 Atomic orbital electron populations 1.22610 0.98676 1.01942 0.99827 1.18918 0.90705 0.92503 0.83812 0.94547 1.21103 1.32787 1.14625 0.87855 0.89363 1.24890 0.95514 0.96569 0.95735 1.69864 1.44764 1.39947 0.98025 0.87029 0.81155 0.83761 0.77357 1.20062 1.22204 1.18929 1.55416 1.79641 1.18829 1.30571 1.02844 0.74152 0.73930 0.73771 1.93585 1.48312 1.69141 1.82996 1.93695 1.79403 1.60584 1.60325 1.31449 1.15145 1.11162 1.10896 1.21022 1.00116 0.90264 0.92683 1.21532 0.90633 1.01405 0.94760 1.16019 0.90202 0.90541 1.01480 1.25392 0.93165 0.93607 0.94277 1.81286 1.09428 1.08645 1.07508 1.21059 0.99360 0.91359 0.94916 1.19462 0.94755 0.92198 1.01518 1.18522 0.75383 0.87719 0.75850 1.93180 1.41151 1.94035 1.87055 1.93418 1.59989 1.84580 1.74636 1.93407 1.95452 1.89800 1.33811 0.91992 0.93325 0.93507 0.92324 0.74179 0.81623 0.82970 0.82573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.40 9.00 37.16 0.33 -3.07 16 2 C 0.25 5.07 2.38 -69.08 -0.16 4.90 16 3 H 0.04 0.73 6.72 -51.93 -0.35 0.39 16 4 C -0.52 -12.91 9.34 -34.44 -0.32 -13.23 16 5 H 0.09 2.34 7.85 -52.49 -0.41 1.93 16 6 C 0.08 2.00 5.45 -17.82 -0.10 1.91 16 7 N -0.89 -25.03 13.96 55.43 0.77 -24.26 16 8 Si 0.88 19.83 24.37 -169.99 -4.14 15.69 16 9 H -0.27 -6.07 6.87 56.52 0.39 -5.69 16 10 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.26 -5.54 6.53 56.52 0.37 -5.18 16 12 N -1.08 -19.06 3.30 -5.88 -0.02 -19.07 16 13 S 2.67 42.87 4.83 -107.50 -0.52 42.36 16 14 O -0.95 -16.28 16.43 -57.17 -0.94 -17.22 16 15 O -0.95 -16.21 14.24 -57.17 -0.81 -17.03 16 16 C -0.60 -8.47 5.48 -39.49 -0.22 -8.68 16 17 C -0.02 -0.25 9.53 -39.64 -0.38 -0.63 16 18 C -0.06 -0.58 9.76 -39.17 -0.38 -0.96 16 19 C 0.02 0.22 5.73 -106.93 -0.61 -0.39 16 20 C 0.25 2.77 15.33 -22.47 -0.34 2.43 16 21 N -0.39 -5.10 18.54 41.84 0.78 -4.32 16 22 C -0.05 -0.52 9.13 -39.17 -0.36 -0.88 16 23 C -0.08 -1.06 5.38 -104.68 -0.56 -1.62 16 24 C 0.48 7.23 2.78 36.00 0.10 7.33 16 25 F -0.17 -2.41 15.99 2.25 0.04 -2.38 16 26 F -0.15 -2.46 12.66 2.25 0.03 -2.44 16 27 F -0.14 -2.24 14.13 2.25 0.03 -2.21 16 28 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.05 1.00 3.27 -51.93 -0.17 0.83 16 30 H 0.05 0.84 7.78 -51.93 -0.40 0.44 16 31 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 32 H 0.42 6.98 7.82 -34.48 -0.27 6.71 16 33 H 0.17 1.59 7.32 -52.48 -0.38 1.20 16 34 H 0.15 0.91 8.06 -52.49 -0.42 0.49 16 35 H 0.16 1.48 7.17 -52.49 -0.38 1.10 16 LS Contribution 320.68 15.07 4.83 4.83 Total: -1.00 -30.21 320.68 -5.35 -35.57 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -2.39 Total: 3.37 kcal Atomic # 6 Polarization: -9.89 SS G_CDS: -3.00 Total: -12.90 kcal Atomic # 7 Polarization: -49.18 SS G_CDS: 1.53 Total: -47.65 kcal Atomic # 8 Polarization: -32.49 SS G_CDS: -1.75 Total: -34.25 kcal Atomic # 9 Polarization: -7.12 SS G_CDS: 0.10 Total: -7.02 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -4.14 Total: 15.69 kcal Atomic # 16 Polarization: 42.87 SS G_CDS: -0.52 Total: 42.36 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.21 -5.35 -35.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263735476.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.634 kcal (2) G-P(sol) polarization free energy of solvation -30.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds