Wall clock time and date at job start Wed Apr 1 2020 05:21:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.46954 * 2 1 4 4 C 1.50701 * 109.46978 * 119.99506 * 2 1 3 5 5 H 1.07999 * 119.99666 * 120.00188 * 4 2 1 6 6 C 1.37875 * 120.00460 * 299.99947 * 4 2 1 7 7 N 1.31512 * 120.00051 * 180.02562 * 6 4 2 8 8 Si 1.86805 * 119.99871 * 0.02562 * 6 4 2 9 9 H 1.48504 * 109.46675 * 89.99636 * 8 6 4 10 10 H 1.48499 * 109.47171 * 209.99660 * 8 6 4 11 11 H 1.48501 * 109.46888 * 330.00141 * 8 6 4 12 12 N 1.46496 * 109.47318 * 239.99769 * 2 1 3 13 13 S 1.65605 * 119.99826 * 96.24581 * 12 2 1 14 14 O 1.42094 * 106.40580 * 307.65915 * 13 12 2 15 15 O 1.42100 * 106.39740 * 174.73798 * 13 12 2 16 16 C 1.76202 * 107.21617 * 61.20247 * 13 12 2 17 17 C 1.38387 * 119.84649 * 246.65303 * 16 13 12 18 18 C 1.37925 * 120.15373 * 179.97438 * 17 16 13 19 19 C 1.39654 * 119.84242 * 0.02562 * 18 17 16 20 20 C 1.43199 * 120.14644 * 179.97438 * 19 18 17 21 21 N 7.71131 * 144.04458 * 351.52907 * 2 1 3 22 22 C 1.39613 * 119.70089 * 0.27252 * 19 18 17 23 23 C 1.37966 * 119.84694 * 359.47244 * 22 19 18 24 24 C 1.50697 * 119.92549 * 180.23158 * 23 22 19 25 25 F 1.39897 * 109.47449 * 6.38173 * 24 23 22 26 26 F 1.39907 * 109.47130 * 126.38384 * 24 23 22 27 27 F 1.39900 * 109.47249 * 246.37902 * 24 23 22 28 28 H 1.08998 * 109.47330 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47359 * 300.00261 * 1 2 3 30 30 H 1.09004 * 109.47293 * 60.00401 * 1 2 3 31 31 H 0.97005 * 119.99640 * 180.02562 * 7 6 4 32 32 H 0.97000 * 119.99847 * 276.25472 * 12 2 1 33 33 H 1.08008 * 119.92111 * 359.97438 * 17 16 13 34 34 H 1.07993 * 120.07486 * 179.97438 * 18 17 16 35 35 H 1.08001 * 120.07267 * 179.72437 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1315 6 6 1.6993 -0.2392 2.4828 7 7 2.1381 -0.8589 3.5566 8 14 0.6247 1.2792 2.6541 9 1 -0.8029 0.8727 2.6998 10 1 0.9758 1.9953 3.9068 11 1 0.8470 2.1765 1.4919 12 7 2.0184 -0.6906 -1.1961 13 16 2.4415 0.1797 -2.5400 14 8 1.3350 1.0195 -2.8390 15 8 2.9834 -0.7513 -3.4666 16 6 3.7645 1.2466 -2.0751 17 6 3.5714 2.6168 -2.0596 18 6 4.6025 3.4577 -1.6963 19 6 5.8438 2.9234 -1.3441 20 6 6.9190 3.7905 -0.9663 21 7 7.7721 4.4783 -0.6670 22 6 6.0335 1.5404 -1.3679 23 6 4.9919 0.7106 -1.7282 24 6 5.1931 -0.7827 -1.7495 25 9 6.4557 -1.0906 -1.2316 26 9 4.2069 -1.3974 -0.9704 27 9 5.1034 -1.2467 -3.0663 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.9034 -0.5276 4.4376 32 1 2.0937 -1.6577 -1.2009 33 1 2.6110 3.0286 -2.3327 34 1 4.4505 4.5268 -1.6851 35 1 6.9922 1.1210 -1.1009 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263735476.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:48 Heat of formation + Delta-G solvation = -152.878536 kcal Electronic energy + Delta-G solvation = -30087.728450 eV Core-core repulsion = 25377.930544 eV Total energy + Delta-G solvation = -4709.797906 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.054 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -51.24848 -48.80429 -48.59677 -40.90538 -38.40331 -37.82096 -37.39694 -36.99352 -34.19135 -33.64272 -32.94477 -30.91686 -27.39728 -27.02016 -25.92018 -23.65907 -22.82180 -20.91962 -20.79327 -19.73455 -19.65463 -19.22671 -18.71656 -17.95886 -17.84204 -17.48587 -17.00814 -16.21628 -15.91327 -15.66341 -15.45282 -15.39052 -15.30538 -15.16634 -15.09154 -14.86943 -14.71570 -14.68950 -14.20841 -14.18914 -14.05137 -13.93123 -13.92307 -13.59907 -13.47448 -13.21445 -13.03456 -12.91402 -12.63246 -12.44286 -12.16785 -12.01666 -11.41157 -11.17942 -10.79884 -10.73995 -10.58363 -10.19520 -8.22659 -6.27725 -1.16788 -0.67927 -0.31193 1.25480 1.31695 1.39793 1.42608 1.51452 1.52280 1.92330 2.31327 2.37168 2.38099 2.53888 2.60574 2.83378 3.12327 3.14534 3.32470 3.55404 3.73012 3.96000 4.02014 4.28599 4.36198 4.46512 4.53744 4.60895 4.78327 4.80553 4.95939 5.24213 5.28355 5.53825 5.57256 6.14600 6.25012 6.39604 6.81604 7.36927 8.92828 Molecular weight = 348.05amu Principal moments of inertia in cm(-1) A = 0.009741 B = 0.006032 C = 0.005179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2873.763223 B = 4640.931263 C = 5405.483022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.248 3.752 3 H 0.051 0.949 4 C -0.515 4.515 5 H 0.055 0.945 6 C 0.021 3.979 7 N -0.942 5.942 8 Si 0.925 3.075 9 H -0.267 1.267 10 H -0.303 1.303 11 H -0.231 1.231 12 N -1.087 6.087 13 S 2.681 3.319 14 O -0.961 6.961 15 O -0.965 6.965 16 C -0.620 4.620 17 C -0.022 4.022 18 C -0.040 4.040 19 C 0.027 3.973 20 C 0.276 3.724 21 N -0.425 5.425 22 C -0.043 4.043 23 C -0.095 4.095 24 C 0.474 3.526 25 F -0.170 7.170 26 F -0.162 7.162 27 F -0.150 7.150 28 H 0.061 0.939 29 H 0.044 0.956 30 H 0.067 0.933 31 H 0.265 0.735 32 H 0.421 0.579 33 H 0.188 0.812 34 H 0.196 0.804 35 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.803 8.088 -12.643 15.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.141 3.859 3 H 0.069 0.931 4 C -0.554 4.554 5 H 0.073 0.927 6 C -0.178 4.178 7 N -0.582 5.582 8 Si 0.752 3.248 9 H -0.194 1.194 10 H -0.231 1.231 11 H -0.154 1.154 12 N -0.849 5.849 13 S 2.769 3.231 14 O -0.951 6.951 15 O -0.955 6.955 16 C -0.706 4.706 17 C -0.041 4.041 18 C -0.060 4.060 19 C 0.023 3.977 20 C -0.040 4.040 21 N -0.100 5.100 22 C -0.064 4.064 23 C -0.097 4.097 24 C 0.419 3.581 25 F -0.151 7.151 26 F -0.143 7.143 27 F -0.131 7.131 28 H 0.080 0.920 29 H 0.062 0.938 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.259 0.741 33 H 0.205 0.795 34 H 0.213 0.787 35 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 4.765 9.248 -12.833 16.520 hybrid contribution -0.005 -0.657 1.175 1.346 sum 4.759 8.591 -11.658 15.244 Atomic orbital electron populations 1.22598 0.97732 1.02368 1.00550 1.18757 0.91377 0.92720 0.83009 0.93127 1.21328 1.31143 1.13355 0.89568 0.92695 1.25661 0.97050 0.99603 0.95451 1.70019 1.47295 1.42261 0.98590 0.86221 0.79628 0.80876 0.78053 1.19355 1.23064 1.15432 1.55362 1.80320 1.19159 1.30088 1.02241 0.74197 0.73670 0.72998 1.93563 1.49391 1.69034 1.83067 1.93678 1.79672 1.61600 1.60591 1.31096 1.14252 1.12127 1.13134 1.21391 1.01632 0.89084 0.91968 1.21980 0.89025 1.03269 0.91757 1.16036 0.90564 0.89850 1.01232 1.25255 0.92575 0.92854 0.93311 1.81332 1.10270 1.09788 1.08580 1.21219 0.99367 0.91788 0.94067 1.19357 0.95629 0.91160 1.03600 1.18786 0.75149 0.88769 0.75347 1.93177 1.40788 1.94144 1.86976 1.93380 1.60786 1.85081 1.75064 1.93386 1.95477 1.90064 1.34212 0.91976 0.93790 0.91393 0.92610 0.74139 0.79525 0.78727 0.81189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.48 9.00 71.98 0.65 -5.84 16 2 C 0.25 9.84 2.38 44.25 0.11 9.95 16 3 H 0.05 1.89 6.72 -2.39 -0.02 1.87 16 4 C -0.51 -25.50 9.34 25.60 0.24 -25.26 16 5 H 0.05 3.03 7.85 -2.91 -0.02 3.01 16 6 C 0.02 1.10 5.45 84.65 0.46 1.56 16 7 N -0.94 -54.43 13.96 21.45 0.30 -54.13 16 8 Si 0.93 39.51 24.37 68.60 1.67 41.18 16 9 H -0.27 -11.07 6.87 99.48 0.68 -10.38 16 10 H -0.30 -13.24 7.11 99.48 0.71 -12.53 16 11 H -0.23 -8.55 6.53 99.48 0.65 -7.90 16 12 N -1.09 -37.68 3.30 -172.53 -0.57 -38.25 16 13 S 2.68 82.43 4.83 -56.49 -0.27 82.15 16 14 O -0.96 -30.55 16.43 -128.00 -2.10 -32.66 16 15 O -0.97 -32.51 14.24 -128.00 -1.82 -34.33 16 16 C -0.62 -16.01 5.48 22.33 0.12 -15.89 16 17 C -0.02 -0.41 9.53 22.23 0.21 -0.20 16 18 C -0.04 -0.55 9.76 22.54 0.22 -0.33 16 19 C 0.03 0.46 5.73 -21.36 -0.12 0.34 16 20 C 0.28 5.22 15.33 88.33 1.35 6.57 16 21 N -0.42 -9.96 18.54 19.00 0.35 -9.61 16 22 C -0.04 -0.89 9.13 22.54 0.21 -0.69 16 23 C -0.09 -2.48 5.38 -19.90 -0.11 -2.58 16 24 C 0.47 14.25 2.78 71.24 0.20 14.44 16 25 F -0.17 -4.72 15.99 44.97 0.72 -4.00 16 26 F -0.16 -5.64 12.66 44.97 0.57 -5.07 16 27 F -0.15 -4.71 14.13 44.97 0.64 -4.07 16 28 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 29 H 0.04 1.68 3.27 -2.38 -0.01 1.67 16 30 H 0.07 2.24 7.78 -2.38 -0.02 2.22 16 31 H 0.26 14.52 8.31 -92.70 -0.77 13.75 16 32 H 0.42 14.24 7.82 -96.74 -0.76 13.49 16 33 H 0.19 2.69 7.32 -2.91 -0.02 2.67 16 34 H 0.20 1.08 8.06 -2.91 -0.02 1.05 16 35 H 0.17 2.91 7.17 -2.91 -0.02 2.89 16 Total: -1.00 -66.03 320.68 3.38 -62.65 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: 0.36 Total: 14.05 kcal Atomic # 6 Polarization: -21.46 SS G_CDS: 3.54 Total: -17.92 kcal Atomic # 7 Polarization: -102.07 SS G_CDS: 0.08 Total: -101.99 kcal Atomic # 8 Polarization: -63.06 SS G_CDS: -3.93 Total: -66.99 kcal Atomic # 9 Polarization: -15.07 SS G_CDS: 1.92 Total: -13.15 kcal Atomic # 14 Polarization: 39.51 SS G_CDS: 1.67 Total: 41.18 kcal Atomic # 16 Polarization: 82.43 SS G_CDS: -0.27 Total: 82.15 kcal Total: -66.03 3.38 -62.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263735476.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.225 kcal (2) G-P(sol) polarization free energy of solvation -66.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds