Wall clock time and date at job start Wed Apr 1 2020 06:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34640 * 116.99594 * 2 1 4 4 O 1.21504 * 120.00083 * 359.97438 * 3 2 1 5 5 N 1.34772 * 119.99550 * 180.02562 * 3 2 1 6 6 C 1.46504 * 120.00163 * 179.97438 * 5 3 2 7 7 C 1.52994 * 109.47370 * 179.97438 * 6 5 3 8 8 C 1.50703 * 109.47200 * 179.97438 * 7 6 5 9 9 C 1.33387 * 125.19839 * 90.00056 * 8 7 6 10 10 C 1.38426 * 114.91851 * 179.74971 * 9 8 7 11 11 C 1.33385 * 114.92095 * 0.43468 * 10 9 8 12 12 S 1.76203 * 125.20275 * 179.85830 * 11 10 9 13 13 O 1.42091 * 106.40352 * 336.17476 * 12 11 10 14 14 O 1.42109 * 106.40049 * 203.25699 * 12 11 10 15 15 N 1.65598 * 107.21893 * 89.72125 * 12 11 10 16 16 C 1.46503 * 119.99611 * 270.00086 * 15 12 11 17 17 C 1.36928 * 120.00605 * 89.99635 * 15 12 11 18 18 H 1.08007 * 119.99743 * 336.18645 * 17 15 12 19 19 C 1.38811 * 120.00511 * 156.45717 * 17 15 12 20 20 N 1.31618 * 120.00587 * 156.63728 * 19 17 15 21 21 Si 1.86803 * 119.99504 * 336.63692 * 19 17 15 22 22 H 1.48500 * 109.47151 * 84.83604 * 21 19 17 23 23 H 1.48503 * 109.46926 * 204.82961 * 21 19 17 24 24 H 1.48497 * 109.47604 * 324.83398 * 21 19 17 25 25 S 1.75883 * 125.20534 * 269.97981 * 8 7 6 26 26 H 1.09002 * 109.47136 * 300.00244 * 1 2 3 27 27 H 1.08998 * 109.47295 * 60.00368 * 1 2 3 28 28 H 1.09000 * 109.47191 * 180.02562 * 1 2 3 29 29 H 0.97008 * 120.00302 * 359.97438 * 5 3 2 30 30 H 1.09001 * 109.47021 * 59.99813 * 6 5 3 31 31 H 1.08996 * 109.47102 * 300.00272 * 6 5 3 32 32 H 1.09001 * 109.46846 * 60.00141 * 7 6 5 33 33 H 1.08996 * 109.47585 * 300.00411 * 7 6 5 34 34 H 1.08001 * 122.54126 * 359.97438 * 9 8 7 35 35 H 1.08001 * 122.54243 * 180.27406 * 10 9 8 36 36 H 1.09003 * 109.46915 * 274.48399 * 16 15 12 37 37 H 1.09004 * 109.47331 * 34.48347 * 16 15 12 38 38 H 1.09002 * 109.47589 * 154.48818 * 16 15 12 39 39 H 0.96997 * 120.00472 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4014 2.2187 -0.0005 5 7 3.4091 1.2702 -0.0005 6 6 4.0743 2.5756 -0.0011 7 6 5.5910 2.3751 -0.0010 8 6 6.2752 3.7179 -0.0022 9 6 6.6243 4.4039 1.0872 10 6 7.2476 5.6147 0.8391 11 6 7.3964 5.9162 -0.4517 12 16 8.1467 7.3849 -1.0719 13 8 8.0319 8.3590 -0.0438 14 8 7.6333 7.5748 -2.3833 15 7 9.7642 7.0743 -1.2435 16 6 10.6820 7.3349 -0.1318 17 6 10.2438 6.5737 -2.4243 18 1 9.5868 6.0296 -3.0867 19 6 11.5758 6.7608 -2.7675 20 7 12.1587 5.9397 -3.6151 21 14 12.5410 8.1780 -2.0263 22 1 13.0828 7.7705 -0.7051 23 1 13.6619 8.5400 -2.9306 24 1 11.6457 9.3502 -1.8539 25 16 6.7360 4.6198 -1.4401 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.9375 0.4567 -0.0005 30 1 3.7817 3.1328 0.8889 31 1 3.7811 3.1324 -0.8910 32 1 5.8839 1.8177 -0.8907 33 1 5.8840 1.8185 0.8892 34 1 6.4383 4.0404 2.0870 35 1 7.5853 6.2673 1.6306 36 1 10.9947 8.3788 -0.1559 37 1 10.1774 7.1284 0.8121 38 1 11.5570 6.6914 -0.2243 39 1 13.0895 6.0703 -3.8546 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276236874.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:54:34 Heat of formation + Delta-G solvation = -101.762391 kcal Electronic energy + Delta-G solvation = -25458.447902 eV Core-core repulsion = 21428.167250 eV Total energy + Delta-G solvation = -4030.280652 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 348.069 amu Computer time = 3.16 seconds Orbital eigenvalues (eV) -40.74302 -38.25029 -37.16022 -36.44881 -35.78673 -35.63437 -35.08796 -32.57147 -31.71761 -28.72625 -27.47620 -26.50343 -24.69170 -23.92511 -22.61619 -21.70341 -20.12172 -19.25753 -18.38239 -17.60978 -17.18669 -17.08810 -16.94176 -16.61953 -16.06751 -15.48662 -15.26760 -15.03746 -14.48472 -14.38480 -14.17150 -13.62386 -13.43166 -13.26871 -12.72017 -12.68335 -12.62932 -12.48437 -12.44608 -12.30035 -12.13172 -11.77388 -11.39087 -11.34507 -11.13595 -10.98236 -10.90283 -10.83486 -10.59633 -10.45810 -10.32136 -9.91734 -9.62729 -9.28086 -8.94696 -8.37886 -8.14722 -6.29806 -3.89408 0.58346 1.14369 1.60232 1.82847 1.96417 2.47319 2.56380 3.15723 3.34295 3.37372 3.84171 3.91756 4.27981 4.42108 4.47478 4.53397 4.62545 4.77392 4.85225 5.04847 5.08232 5.11803 5.16131 5.33298 5.41707 5.51914 5.58432 5.79329 5.82156 5.95291 5.97867 6.02368 6.09416 6.37224 6.39437 6.77521 6.97472 7.74361 7.95217 8.27125 9.04067 9.23574 10.81991 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.024987 B = 0.002371 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.297235 B =11805.116265 C =12167.970285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 O -0.374 6.374 3 C 0.645 3.355 4 O -0.569 6.569 5 N -0.709 5.709 6 C 0.139 3.861 7 C -0.061 4.061 8 C -0.170 4.170 9 C -0.152 4.152 10 C -0.014 4.014 11 C -0.766 4.766 12 S 2.703 3.297 13 O -0.975 6.975 14 O -0.948 6.948 15 N -0.866 5.866 16 C 0.077 3.923 17 C -0.330 4.330 18 H 0.114 0.886 19 C 0.065 3.935 20 N -0.875 5.875 21 Si 0.879 3.121 22 H -0.276 1.276 23 H -0.294 1.294 24 H -0.269 1.269 25 S 0.243 5.757 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.103 0.897 29 H 0.408 0.592 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.094 0.906 34 H 0.144 0.856 35 H 0.151 0.849 36 H 0.044 0.956 37 H 0.056 0.944 38 H 0.082 0.918 39 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.805 -12.742 10.403 22.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.288 6.288 3 C 0.398 3.602 4 O -0.457 6.457 5 N -0.369 5.369 6 C 0.016 3.984 7 C -0.101 4.101 8 C -0.290 4.290 9 C -0.184 4.184 10 C -0.048 4.048 11 C -0.965 4.965 12 S 2.789 3.211 13 O -0.965 6.965 14 O -0.939 6.939 15 N -0.701 5.701 16 C -0.070 4.070 17 C -0.458 4.458 18 H 0.131 0.869 19 C -0.142 4.142 20 N -0.513 5.513 21 Si 0.707 3.293 22 H -0.202 1.202 23 H -0.221 1.221 24 H -0.194 1.194 25 S 0.511 5.489 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.121 0.879 29 H 0.243 0.757 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.107 0.893 33 H 0.113 0.887 34 H 0.161 0.839 35 H 0.168 0.832 36 H 0.062 0.938 37 H 0.075 0.925 38 H 0.100 0.900 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -15.644 -11.825 8.515 21.379 hybrid contribution 0.999 -0.098 2.141 2.364 sum -14.646 -11.923 10.655 21.684 Atomic orbital electron populations 1.23214 0.74167 1.03533 1.02884 1.86236 1.24402 1.31041 1.87103 1.18123 0.83395 0.82247 0.76454 1.91034 1.64570 1.34898 1.55217 1.44613 1.03125 1.10661 1.78468 1.21440 0.90275 0.82726 1.03986 1.20313 0.92470 0.92465 1.04844 1.24710 1.05371 1.00587 0.98330 1.20226 1.03230 0.95547 0.99372 1.19875 0.94536 0.95789 0.94620 1.36522 1.24744 1.28275 1.06941 1.01491 0.73199 0.73344 0.73105 1.93506 1.86923 1.55641 1.60434 1.93537 1.79175 1.84301 1.36850 1.52973 1.20619 1.78087 1.18428 1.21761 0.95935 1.00623 0.88653 1.18671 0.97046 1.34481 0.95620 0.86895 1.25039 0.96175 0.96707 0.96237 1.69863 1.12391 1.33998 1.35063 0.87142 0.79553 0.84373 0.78197 1.20222 1.22075 1.19383 1.84287 1.51976 1.07576 1.05024 0.91791 0.91719 0.87890 0.75652 0.90299 0.90375 0.89279 0.88714 0.83875 0.83165 0.93764 0.92502 0.89972 0.91846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 72. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.35 10.56 101.05 1.07 1.42 16 2 O -0.37 -3.34 10.62 -40.32 -0.43 -3.77 16 3 C 0.65 6.96 8.75 54.05 0.47 7.43 16 4 O -0.57 -8.13 16.13 -19.27 -0.31 -8.44 16 5 N -0.71 -5.74 5.56 -65.28 -0.36 -6.10 16 6 C 0.14 1.22 5.66 -4.04 -0.02 1.20 16 7 C -0.06 -0.48 5.82 -27.88 -0.16 -0.65 16 8 C -0.17 -2.01 5.76 -36.00 -0.21 -2.21 16 9 C -0.15 -1.82 10.05 -41.21 -0.41 -2.24 16 10 C -0.01 -0.20 9.84 -41.21 -0.41 -0.61 16 11 C -0.77 -13.57 6.57 29.04 0.19 -13.38 16 12 S 2.70 58.17 5.76 -107.50 -0.62 57.55 16 13 O -0.97 -21.27 16.97 -57.17 -0.97 -22.24 16 14 O -0.95 -22.97 17.01 -57.17 -0.97 -23.95 16 15 N -0.87 -20.16 3.11 -66.68 -0.21 -20.37 16 16 C 0.08 1.57 7.84 59.85 0.47 2.04 16 17 C -0.33 -8.79 9.53 -15.06 -0.14 -8.93 16 18 H 0.11 3.18 7.90 -52.48 -0.41 2.76 16 19 C 0.06 1.76 5.17 -17.43 -0.09 1.67 16 20 N -0.88 -24.87 13.97 55.49 0.78 -24.09 16 21 Si 0.88 20.87 24.04 -169.99 -4.09 16.78 16 22 H -0.28 -6.00 6.37 56.52 0.36 -5.64 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.27 -6.42 6.90 56.52 0.39 -6.03 16 25 S 0.24 3.81 23.20 -107.50 -2.49 1.32 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.41 2.15 8.58 -40.82 -0.35 1.80 16 30 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.14 1.27 8.06 -52.49 -0.42 0.84 16 35 H 0.15 1.95 8.06 -52.49 -0.42 1.52 16 36 H 0.04 0.90 5.78 -51.93 -0.30 0.60 16 37 H 0.06 0.95 7.95 -51.93 -0.41 0.54 16 38 H 0.08 1.69 5.78 -51.93 -0.30 1.39 16 39 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 359.72 15.07 5.42 5.42 Total: -1.00 -34.89 359.72 -8.27 -43.16 By element: Atomic # 1 Polarization: 3.76 SS G_CDS: -4.77 Total: -1.01 kcal Atomic # 6 Polarization: -15.01 SS G_CDS: 0.75 Total: -14.25 kcal Atomic # 7 Polarization: -50.77 SS G_CDS: 0.20 Total: -50.57 kcal Atomic # 8 Polarization: -55.72 SS G_CDS: -2.68 Total: -58.40 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.09 Total: 16.78 kcal Atomic # 16 Polarization: 61.98 SS G_CDS: -3.11 Total: 58.87 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.89 -8.27 -43.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276236874.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.599 kcal (2) G-P(sol) polarization free energy of solvation -34.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.16 seconds