Wall clock time and date at job start Wed Apr 1 2020 06:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34640 * 116.99594 * 2 1 4 4 O 1.21504 * 120.00083 * 359.97438 * 3 2 1 5 5 N 1.34772 * 119.99550 * 180.02562 * 3 2 1 6 6 C 1.46504 * 120.00163 * 179.97438 * 5 3 2 7 7 C 1.52994 * 109.47370 * 179.97438 * 6 5 3 8 8 C 1.50703 * 109.47200 * 179.97438 * 7 6 5 9 9 C 1.33387 * 125.19839 * 90.00056 * 8 7 6 10 10 C 1.38426 * 114.91851 * 179.74971 * 9 8 7 11 11 C 1.33385 * 114.92095 * 0.43468 * 10 9 8 12 12 S 1.76203 * 125.20275 * 179.85830 * 11 10 9 13 13 O 1.42091 * 106.40352 * 336.17476 * 12 11 10 14 14 O 1.42109 * 106.40049 * 203.25699 * 12 11 10 15 15 N 1.65598 * 107.21893 * 89.72125 * 12 11 10 16 16 C 1.46503 * 119.99611 * 270.00086 * 15 12 11 17 17 C 1.36928 * 120.00605 * 89.99635 * 15 12 11 18 18 H 1.08007 * 119.99743 * 336.18645 * 17 15 12 19 19 C 1.38811 * 120.00511 * 156.45717 * 17 15 12 20 20 N 1.31618 * 120.00587 * 156.63728 * 19 17 15 21 21 Si 1.86803 * 119.99504 * 336.63692 * 19 17 15 22 22 H 1.48500 * 109.47151 * 84.83604 * 21 19 17 23 23 H 1.48503 * 109.46926 * 204.82961 * 21 19 17 24 24 H 1.48497 * 109.47604 * 324.83398 * 21 19 17 25 25 S 1.75883 * 125.20534 * 269.97981 * 8 7 6 26 26 H 1.09002 * 109.47136 * 300.00244 * 1 2 3 27 27 H 1.08998 * 109.47295 * 60.00368 * 1 2 3 28 28 H 1.09000 * 109.47191 * 180.02562 * 1 2 3 29 29 H 0.97008 * 120.00302 * 359.97438 * 5 3 2 30 30 H 1.09001 * 109.47021 * 59.99813 * 6 5 3 31 31 H 1.08996 * 109.47102 * 300.00272 * 6 5 3 32 32 H 1.09001 * 109.46846 * 60.00141 * 7 6 5 33 33 H 1.08996 * 109.47585 * 300.00411 * 7 6 5 34 34 H 1.08001 * 122.54126 * 359.97438 * 9 8 7 35 35 H 1.08001 * 122.54243 * 180.27406 * 10 9 8 36 36 H 1.09003 * 109.46915 * 274.48399 * 16 15 12 37 37 H 1.09004 * 109.47331 * 34.48347 * 16 15 12 38 38 H 1.09002 * 109.47589 * 154.48818 * 16 15 12 39 39 H 0.96997 * 120.00472 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4014 2.2187 -0.0005 5 7 3.4091 1.2702 -0.0005 6 6 4.0743 2.5756 -0.0011 7 6 5.5910 2.3751 -0.0010 8 6 6.2752 3.7179 -0.0022 9 6 6.6243 4.4039 1.0872 10 6 7.2476 5.6147 0.8391 11 6 7.3964 5.9162 -0.4517 12 16 8.1467 7.3849 -1.0719 13 8 8.0319 8.3590 -0.0438 14 8 7.6333 7.5748 -2.3833 15 7 9.7642 7.0743 -1.2435 16 6 10.6820 7.3349 -0.1318 17 6 10.2438 6.5737 -2.4243 18 1 9.5868 6.0296 -3.0867 19 6 11.5758 6.7608 -2.7675 20 7 12.1587 5.9397 -3.6151 21 14 12.5410 8.1780 -2.0263 22 1 13.0828 7.7705 -0.7051 23 1 13.6619 8.5400 -2.9306 24 1 11.6457 9.3502 -1.8539 25 16 6.7360 4.6198 -1.4401 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.9375 0.4567 -0.0005 30 1 3.7817 3.1328 0.8889 31 1 3.7811 3.1324 -0.8910 32 1 5.8839 1.8177 -0.8907 33 1 5.8840 1.8185 0.8892 34 1 6.4383 4.0404 2.0870 35 1 7.5853 6.2673 1.6306 36 1 10.9947 8.3788 -0.1559 37 1 10.1774 7.1284 0.8121 38 1 11.5570 6.6914 -0.2243 39 1 13.0895 6.0703 -3.8546 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276236874.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:54:33 Heat of formation + Delta-G solvation = -130.501804 kcal Electronic energy + Delta-G solvation = -25459.694137 eV Core-core repulsion = 21428.167250 eV Total energy + Delta-G solvation = -4031.526886 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 348.069 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.51115 -39.25580 -38.20519 -37.89027 -37.60685 -36.84946 -36.49445 -33.74549 -33.44237 -29.60131 -28.26395 -28.16665 -25.91606 -25.57013 -23.51762 -22.45764 -21.36623 -20.20888 -19.91954 -18.97064 -18.70469 -18.38933 -17.99490 -17.71630 -17.26509 -17.09865 -16.23210 -16.07620 -15.83263 -15.47043 -15.09410 -14.95402 -14.63903 -14.51676 -14.34226 -14.28473 -13.93266 -13.63503 -13.56249 -13.15798 -13.11023 -13.06893 -12.97750 -12.72903 -12.69420 -12.38644 -12.17657 -12.12660 -11.87504 -11.82424 -11.80962 -11.71295 -11.04462 -10.35804 -10.17632 -10.04185 -9.57493 -8.36619 -5.96771 -0.64271 -0.38614 0.40583 0.84945 1.12711 1.28240 1.42302 1.49280 1.52178 1.66227 2.26570 2.31832 2.73240 3.06610 3.19481 3.57482 3.70960 3.80082 3.97135 4.21405 4.27692 4.34310 4.36211 4.40285 4.49844 4.52744 4.67934 4.70013 4.76197 4.85101 4.92849 5.01980 5.09475 5.12232 5.34301 5.39315 5.73380 6.18665 6.30501 7.04257 7.15462 7.22618 8.78817 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.024987 B = 0.002371 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.297235 B =11805.116265 C =12167.970285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.373 6.373 3 C 0.641 3.359 4 O -0.611 6.611 5 N -0.693 5.693 6 C 0.142 3.858 7 C -0.056 4.056 8 C -0.133 4.133 9 C -0.154 4.154 10 C 0.006 3.994 11 C -0.800 4.800 12 S 2.713 3.287 13 O -0.984 6.984 14 O -0.992 6.992 15 N -0.884 5.884 16 C 0.065 3.935 17 C -0.322 4.322 18 H 0.081 0.919 19 C 0.015 3.985 20 N -0.918 5.918 21 Si 0.928 3.072 22 H -0.239 1.239 23 H -0.296 1.296 24 H -0.274 1.274 25 S 0.180 5.820 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.137 0.863 29 H 0.424 0.576 30 H 0.078 0.922 31 H 0.058 0.942 32 H 0.102 0.898 33 H 0.134 0.866 34 H 0.190 0.810 35 H 0.171 0.829 36 H 0.045 0.955 37 H 0.096 0.904 38 H 0.081 0.919 39 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.129 -14.519 13.767 25.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.286 6.286 3 C 0.394 3.606 4 O -0.502 6.502 5 N -0.354 5.354 6 C 0.019 3.981 7 C -0.095 4.095 8 C -0.253 4.253 9 C -0.184 4.184 10 C -0.029 4.029 11 C -1.004 5.004 12 S 2.805 3.195 13 O -0.975 6.975 14 O -0.983 6.983 15 N -0.717 5.717 16 C -0.081 4.081 17 C -0.452 4.452 18 H 0.098 0.902 19 C -0.187 4.187 20 N -0.558 5.558 21 Si 0.754 3.246 22 H -0.162 1.162 23 H -0.224 1.224 24 H -0.200 1.200 25 S 0.448 5.552 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.155 0.845 29 H 0.263 0.737 30 H 0.096 0.904 31 H 0.077 0.923 32 H 0.120 0.880 33 H 0.152 0.848 34 H 0.207 0.793 35 H 0.188 0.812 36 H 0.063 0.937 37 H 0.114 0.886 38 H 0.099 0.901 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -15.919 -13.582 11.885 24.065 hybrid contribution 0.880 0.291 1.173 1.495 sum -15.039 -13.291 13.058 23.944 Atomic orbital electron populations 1.23506 0.72792 1.05693 1.02512 1.86252 1.25775 1.29858 1.86715 1.18371 0.83977 0.82199 0.76051 1.91008 1.65634 1.36351 1.57226 1.44465 1.02405 1.11179 1.77307 1.21313 0.90796 0.82915 1.03085 1.20451 0.91146 0.90505 1.07406 1.25132 1.03262 1.01111 0.95828 1.20637 1.02243 0.94195 1.01372 1.20391 0.92259 0.96648 0.93645 1.35657 1.28476 1.27841 1.08460 1.00783 0.72610 0.73852 0.72288 1.93477 1.86916 1.57045 1.60033 1.93477 1.79701 1.85644 1.39453 1.52982 1.21925 1.78538 1.18305 1.21962 0.96133 1.00602 0.89370 1.18472 0.96556 1.33257 0.96895 0.90158 1.25718 0.97282 0.98622 0.97121 1.69948 1.13009 1.35720 1.37135 0.86337 0.78100 0.80922 0.79278 1.16246 1.22354 1.19976 1.84523 1.53586 1.08893 1.08239 0.92022 0.92329 0.84454 0.73737 0.90409 0.92346 0.87996 0.84844 0.79280 0.81163 0.93687 0.88563 0.90057 0.91623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.53 10.56 113.37 1.20 1.73 16 2 O -0.37 -5.97 10.62 -55.49 -0.59 -6.56 16 3 C 0.64 12.87 8.75 129.79 1.14 14.00 16 4 O -0.61 -17.16 16.13 19.83 0.32 -16.84 16 5 N -0.69 -9.40 5.56 -590.87 -3.29 -12.69 16 6 C 0.14 2.14 5.66 86.38 0.49 2.63 16 7 C -0.06 -0.65 5.82 29.85 0.17 -0.48 16 8 C -0.13 -2.73 5.76 24.59 0.14 -2.59 16 9 C -0.15 -3.02 10.05 21.22 0.21 -2.81 16 10 C 0.01 0.17 9.84 21.22 0.21 0.37 16 11 C -0.80 -27.94 6.57 66.72 0.44 -27.50 16 12 S 2.71 118.59 5.76 -56.49 -0.33 118.26 16 13 O -0.98 -42.49 16.97 -128.00 -2.17 -44.66 16 14 O -0.99 -50.60 17.01 -128.00 -2.18 -52.77 16 15 N -0.88 -41.39 3.11 -364.88 -1.13 -42.52 16 16 C 0.06 2.54 7.84 127.77 1.00 3.54 16 17 C -0.32 -17.74 9.53 84.03 0.80 -16.94 16 18 H 0.08 4.83 7.90 -2.91 -0.02 4.81 16 19 C 0.01 0.83 5.17 84.86 0.44 1.27 16 20 N -0.92 -53.64 13.97 21.65 0.30 -53.33 16 21 Si 0.93 42.68 24.04 68.60 1.65 44.33 16 22 H -0.24 -9.48 6.37 99.48 0.63 -8.85 16 23 H -0.30 -13.62 7.11 99.48 0.71 -12.92 16 24 H -0.27 -12.74 6.90 99.48 0.69 -12.06 16 25 S 0.18 5.67 23.20 -56.49 -1.31 4.36 16 26 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.14 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.42 2.99 8.58 -92.70 -0.80 2.19 16 30 H 0.08 1.23 8.14 -2.39 -0.02 1.22 16 31 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.13 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.19 2.07 8.06 -2.91 -0.02 2.04 16 35 H 0.17 3.76 8.06 -2.91 -0.02 3.73 16 36 H 0.04 1.74 5.78 -2.39 -0.01 1.73 16 37 H 0.10 2.94 7.95 -2.39 -0.02 2.93 16 38 H 0.08 3.18 5.78 -2.39 -0.01 3.17 16 39 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 Total: -1.00 -80.03 359.72 -2.27 -82.31 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: 0.21 Total: 6.90 kcal Atomic # 6 Polarization: -33.01 SS G_CDS: 6.24 Total: -26.78 kcal Atomic # 7 Polarization: -104.43 SS G_CDS: -4.12 Total: -108.54 kcal Atomic # 8 Polarization: -116.22 SS G_CDS: -4.62 Total: -120.84 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 1.65 Total: 44.33 kcal Atomic # 16 Polarization: 124.26 SS G_CDS: -1.64 Total: 122.62 kcal Total: -80.03 -2.27 -82.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276236874.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.195 kcal (2) G-P(sol) polarization free energy of solvation -80.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds