Wall clock time and date at job start Wed Apr 1 2020 06:54:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45207 * 1
3 3 C 1.34640 * 116.99594 * 2 1
4 4 O 1.21504 * 120.00083 * 359.97438 * 3 2 1
5 5 N 1.34772 * 119.99550 * 180.02562 * 3 2 1
6 6 C 1.46504 * 120.00163 * 179.97438 * 5 3 2
7 7 C 1.52994 * 109.47370 * 179.97438 * 6 5 3
8 8 C 1.50703 * 109.47200 * 179.97438 * 7 6 5
9 9 C 1.33387 * 125.19839 * 90.00056 * 8 7 6
10 10 C 1.38426 * 114.91851 * 179.74971 * 9 8 7
11 11 C 1.33385 * 114.92095 * 0.43468 * 10 9 8
12 12 S 1.76203 * 125.20275 * 179.85830 * 11 10 9
13 13 O 1.42091 * 106.40352 * 336.17476 * 12 11 10
14 14 O 1.42109 * 106.40049 * 203.25699 * 12 11 10
15 15 N 1.65598 * 107.21893 * 89.72125 * 12 11 10
16 16 C 1.46503 * 119.99611 * 270.00086 * 15 12 11
17 17 C 1.36928 * 120.00605 * 89.99635 * 15 12 11
18 18 H 1.08007 * 119.99743 * 336.18645 * 17 15 12
19 19 C 1.38811 * 120.00511 * 156.45717 * 17 15 12
20 20 N 1.31618 * 120.00587 * 156.63728 * 19 17 15
21 21 Si 1.86803 * 119.99504 * 336.63692 * 19 17 15
22 22 H 1.48500 * 109.47151 * 84.83604 * 21 19 17
23 23 H 1.48503 * 109.46926 * 204.82961 * 21 19 17
24 24 H 1.48497 * 109.47604 * 324.83398 * 21 19 17
25 25 S 1.75883 * 125.20534 * 269.97981 * 8 7 6
26 26 H 1.09002 * 109.47136 * 300.00244 * 1 2 3
27 27 H 1.08998 * 109.47295 * 60.00368 * 1 2 3
28 28 H 1.09000 * 109.47191 * 180.02562 * 1 2 3
29 29 H 0.97008 * 120.00302 * 359.97438 * 5 3 2
30 30 H 1.09001 * 109.47021 * 59.99813 * 6 5 3
31 31 H 1.08996 * 109.47102 * 300.00272 * 6 5 3
32 32 H 1.09001 * 109.46846 * 60.00141 * 7 6 5
33 33 H 1.08996 * 109.47585 * 300.00411 * 7 6 5
34 34 H 1.08001 * 122.54126 * 359.97438 * 9 8 7
35 35 H 1.08001 * 122.54243 * 180.27406 * 10 9 8
36 36 H 1.09003 * 109.46915 * 274.48399 * 16 15 12
37 37 H 1.09004 * 109.47331 * 34.48347 * 16 15 12
38 38 H 1.09002 * 109.47589 * 154.48818 * 16 15 12
39 39 H 0.96997 * 120.00472 * 180.02562 * 20 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4521 0.0000 0.0000
3 6 2.0632 1.1997 0.0000
4 8 1.4014 2.2187 -0.0005
5 7 3.4091 1.2702 -0.0005
6 6 4.0743 2.5756 -0.0011
7 6 5.5910 2.3751 -0.0010
8 6 6.2752 3.7179 -0.0022
9 6 6.6243 4.4039 1.0872
10 6 7.2476 5.6147 0.8391
11 6 7.3964 5.9162 -0.4517
12 16 8.1467 7.3849 -1.0719
13 8 8.0319 8.3590 -0.0438
14 8 7.6333 7.5748 -2.3833
15 7 9.7642 7.0743 -1.2435
16 6 10.6820 7.3349 -0.1318
17 6 10.2438 6.5737 -2.4243
18 1 9.5868 6.0296 -3.0867
19 6 11.5758 6.7608 -2.7675
20 7 12.1587 5.9397 -3.6151
21 14 12.5410 8.1780 -2.0263
22 1 13.0828 7.7705 -0.7051
23 1 13.6619 8.5400 -2.9306
24 1 11.6457 9.3502 -1.8539
25 16 6.7360 4.6198 -1.4401
26 1 -0.3633 0.5139 0.8900
27 1 -0.3634 0.5138 -0.8900
28 1 -0.3633 -1.0277 0.0005
29 1 3.9375 0.4567 -0.0005
30 1 3.7817 3.1328 0.8889
31 1 3.7811 3.1324 -0.8910
32 1 5.8839 1.8177 -0.8907
33 1 5.8840 1.8185 0.8892
34 1 6.4383 4.0404 2.0870
35 1 7.5853 6.2673 1.6306
36 1 10.9947 8.3788 -0.1559
37 1 10.1774 7.1284 0.8121
38 1 11.5570 6.6914 -0.2243
39 1 13.0895 6.0703 -3.8546
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000276236874.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 06:54:33
Heat of formation + Delta-G solvation = -130.501804 kcal
Electronic energy + Delta-G solvation = -25459.694137 eV
Core-core repulsion = 21428.167250 eV
Total energy + Delta-G solvation = -4031.526886 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 348.069 amu
Computer time = 1.39 seconds
Orbital eigenvalues (eV)
-41.51115 -39.25580 -38.20519 -37.89027 -37.60685 -36.84946 -36.49445 -33.74549
-33.44237 -29.60131 -28.26395 -28.16665 -25.91606 -25.57013 -23.51762 -22.45764
-21.36623 -20.20888 -19.91954 -18.97064 -18.70469 -18.38933 -17.99490 -17.71630
-17.26509 -17.09865 -16.23210 -16.07620 -15.83263 -15.47043 -15.09410 -14.95402
-14.63903 -14.51676 -14.34226 -14.28473 -13.93266 -13.63503 -13.56249 -13.15798
-13.11023 -13.06893 -12.97750 -12.72903 -12.69420 -12.38644 -12.17657 -12.12660
-11.87504 -11.82424 -11.80962 -11.71295 -11.04462 -10.35804 -10.17632 -10.04185
-9.57493 -8.36619 -5.96771 -0.64271 -0.38614 0.40583 0.84945 1.12711
1.28240 1.42302 1.49280 1.52178 1.66227 2.26570 2.31832 2.73240
3.06610 3.19481 3.57482 3.70960 3.80082 3.97135 4.21405 4.27692
4.34310 4.36211 4.40285 4.49844 4.52744 4.67934 4.70013 4.76197
4.85101 4.92849 5.01980 5.09475 5.12232 5.34301 5.39315 5.73380
6.18665 6.30501 7.04257 7.15462 7.22618 8.78817
Molecular weight = 348.07amu
Principal moments of inertia in cm(-1)
A = 0.024987 B = 0.002371 C = 0.002301
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1120.297235 B =11805.116265 C =12167.970285
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.049 3.951
2 O -0.373 6.373
3 C 0.641 3.359
4 O -0.611 6.611
5 N -0.693 5.693
6 C 0.142 3.858
7 C -0.056 4.056
8 C -0.133 4.133
9 C -0.154 4.154
10 C 0.006 3.994
11 C -0.800 4.800
12 S 2.713 3.287
13 O -0.984 6.984
14 O -0.992 6.992
15 N -0.884 5.884
16 C 0.065 3.935
17 C -0.322 4.322
18 H 0.081 0.919
19 C 0.015 3.985
20 N -0.918 5.918
21 Si 0.928 3.072
22 H -0.239 1.239
23 H -0.296 1.296
24 H -0.274 1.274
25 S 0.180 5.820
26 H 0.061 0.939
27 H 0.058 0.942
28 H 0.137 0.863
29 H 0.424 0.576
30 H 0.078 0.922
31 H 0.058 0.942
32 H 0.102 0.898
33 H 0.134 0.866
34 H 0.190 0.810
35 H 0.171 0.829
36 H 0.045 0.955
37 H 0.096 0.904
38 H 0.081 0.919
39 H 0.274 0.726
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.129 -14.519 13.767 25.084
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.045 4.045
2 O -0.286 6.286
3 C 0.394 3.606
4 O -0.502 6.502
5 N -0.354 5.354
6 C 0.019 3.981
7 C -0.095 4.095
8 C -0.253 4.253
9 C -0.184 4.184
10 C -0.029 4.029
11 C -1.004 5.004
12 S 2.805 3.195
13 O -0.975 6.975
14 O -0.983 6.983
15 N -0.717 5.717
16 C -0.081 4.081
17 C -0.452 4.452
18 H 0.098 0.902
19 C -0.187 4.187
20 N -0.558 5.558
21 Si 0.754 3.246
22 H -0.162 1.162
23 H -0.224 1.224
24 H -0.200 1.200
25 S 0.448 5.552
26 H 0.080 0.920
27 H 0.077 0.923
28 H 0.155 0.845
29 H 0.263 0.737
30 H 0.096 0.904
31 H 0.077 0.923
32 H 0.120 0.880
33 H 0.152 0.848
34 H 0.207 0.793
35 H 0.188 0.812
36 H 0.063 0.937
37 H 0.114 0.886
38 H 0.099 0.901
39 H 0.084 0.916
Dipole moment (debyes) X Y Z Total
from point charges -15.919 -13.582 11.885 24.065
hybrid contribution 0.880 0.291 1.173 1.495
sum -15.039 -13.291 13.058 23.944
Atomic orbital electron populations
1.23506 0.72792 1.05693 1.02512 1.86252 1.25775 1.29858 1.86715
1.18371 0.83977 0.82199 0.76051 1.91008 1.65634 1.36351 1.57226
1.44465 1.02405 1.11179 1.77307 1.21313 0.90796 0.82915 1.03085
1.20451 0.91146 0.90505 1.07406 1.25132 1.03262 1.01111 0.95828
1.20637 1.02243 0.94195 1.01372 1.20391 0.92259 0.96648 0.93645
1.35657 1.28476 1.27841 1.08460 1.00783 0.72610 0.73852 0.72288
1.93477 1.86916 1.57045 1.60033 1.93477 1.79701 1.85644 1.39453
1.52982 1.21925 1.78538 1.18305 1.21962 0.96133 1.00602 0.89370
1.18472 0.96556 1.33257 0.96895 0.90158 1.25718 0.97282 0.98622
0.97121 1.69948 1.13009 1.35720 1.37135 0.86337 0.78100 0.80922
0.79278 1.16246 1.22354 1.19976 1.84523 1.53586 1.08893 1.08239
0.92022 0.92329 0.84454 0.73737 0.90409 0.92346 0.87996 0.84844
0.79280 0.81163 0.93687 0.88563 0.90057 0.91623
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 31.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.05 0.53 10.56 113.37 1.20 1.73 16
2 O -0.37 -5.97 10.62 -55.49 -0.59 -6.56 16
3 C 0.64 12.87 8.75 129.79 1.14 14.00 16
4 O -0.61 -17.16 16.13 19.83 0.32 -16.84 16
5 N -0.69 -9.40 5.56 -590.87 -3.29 -12.69 16
6 C 0.14 2.14 5.66 86.38 0.49 2.63 16
7 C -0.06 -0.65 5.82 29.85 0.17 -0.48 16
8 C -0.13 -2.73 5.76 24.59 0.14 -2.59 16
9 C -0.15 -3.02 10.05 21.22 0.21 -2.81 16
10 C 0.01 0.17 9.84 21.22 0.21 0.37 16
11 C -0.80 -27.94 6.57 66.72 0.44 -27.50 16
12 S 2.71 118.59 5.76 -56.49 -0.33 118.26 16
13 O -0.98 -42.49 16.97 -128.00 -2.17 -44.66 16
14 O -0.99 -50.60 17.01 -128.00 -2.18 -52.77 16
15 N -0.88 -41.39 3.11 -364.88 -1.13 -42.52 16
16 C 0.06 2.54 7.84 127.77 1.00 3.54 16
17 C -0.32 -17.74 9.53 84.03 0.80 -16.94 16
18 H 0.08 4.83 7.90 -2.91 -0.02 4.81 16
19 C 0.01 0.83 5.17 84.86 0.44 1.27 16
20 N -0.92 -53.64 13.97 21.65 0.30 -53.33 16
21 Si 0.93 42.68 24.04 68.60 1.65 44.33 16
22 H -0.24 -9.48 6.37 99.48 0.63 -8.85 16
23 H -0.30 -13.62 7.11 99.48 0.71 -12.92 16
24 H -0.27 -12.74 6.90 99.48 0.69 -12.06 16
25 S 0.18 5.67 23.20 -56.49 -1.31 4.36 16
26 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16
27 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16
28 H 0.14 0.50 8.14 -2.39 -0.02 0.48 16
29 H 0.42 2.99 8.58 -92.70 -0.80 2.19 16
30 H 0.08 1.23 8.14 -2.39 -0.02 1.22 16
31 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16
32 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16
33 H 0.13 0.72 8.14 -2.39 -0.02 0.70 16
34 H 0.19 2.07 8.06 -2.91 -0.02 2.04 16
35 H 0.17 3.76 8.06 -2.91 -0.02 3.73 16
36 H 0.04 1.74 5.78 -2.39 -0.01 1.73 16
37 H 0.10 2.94 7.95 -2.39 -0.02 2.93 16
38 H 0.08 3.18 5.78 -2.39 -0.01 3.17 16
39 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16
Total: -1.00 -80.03 359.72 -2.27 -82.31
By element:
Atomic # 1 Polarization: 6.69 SS G_CDS: 0.21 Total: 6.90 kcal
Atomic # 6 Polarization: -33.01 SS G_CDS: 6.24 Total: -26.78 kcal
Atomic # 7 Polarization: -104.43 SS G_CDS: -4.12 Total: -108.54 kcal
Atomic # 8 Polarization: -116.22 SS G_CDS: -4.62 Total: -120.84 kcal
Atomic # 14 Polarization: 42.68 SS G_CDS: 1.65 Total: 44.33 kcal
Atomic # 16 Polarization: 124.26 SS G_CDS: -1.64 Total: 122.62 kcal
Total: -80.03 -2.27 -82.31 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000276236874.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -48.195 kcal
(2) G-P(sol) polarization free energy of solvation -80.033 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.227 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.274 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.307 kcal
(6) G-S(sol) free energy of system = (1) + (5) -130.502 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.40 seconds