Wall clock time and date at job start Wed Apr 1 2020 05:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00530 * 2 1 4 4 H 1.48504 * 109.47061 * 270.00261 * 3 2 1 5 5 H 1.48497 * 109.46906 * 29.99434 * 3 2 1 6 6 H 1.48498 * 109.47403 * 149.99880 * 3 2 1 7 7 C 1.37880 * 119.99594 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00010 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 180.02562 * 7 2 1 10 10 N 1.46499 * 109.46992 * 179.97438 * 9 7 2 11 11 C 1.46502 * 119.99999 * 85.00120 * 10 9 7 12 12 C 1.53000 * 109.47424 * 84.99501 * 11 10 9 13 13 C 1.52994 * 117.50267 * 243.75126 * 12 11 10 14 14 C 1.52998 * 117.50019 * 175.08658 * 12 11 10 15 15 S 1.65593 * 120.00395 * 264.99836 * 10 9 7 16 16 O 1.42100 * 106.40784 * 203.54110 * 15 10 9 17 17 O 1.42105 * 106.40278 * 336.46109 * 15 10 9 18 18 C 1.76196 * 107.22113 * 89.99978 * 15 10 9 19 19 C 1.38192 * 120.39140 * 89.99805 * 18 15 10 20 20 N 1.31875 * 120.83606 * 179.97438 * 19 18 15 21 21 C 1.31954 * 121.73223 * 0.02562 * 20 19 18 22 22 Cl 1.73597 * 119.65421 * 180.02562 * 21 20 19 23 23 C 1.38587 * 120.69856 * 0.02562 * 21 20 19 24 24 F 1.35094 * 120.44984 * 179.97438 * 23 21 20 25 25 C 1.38643 * 120.39371 * 269.72987 * 18 15 10 26 26 H 0.97002 * 119.99739 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 28 28 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 29 29 H 1.08995 * 109.47474 * 205.00200 * 11 10 9 30 30 H 1.09003 * 109.46943 * 324.99971 * 11 10 9 31 31 H 1.09003 * 115.54578 * 29.42514 * 12 11 10 32 32 H 1.09005 * 117.49741 * 359.97438 * 13 12 11 33 33 H 1.09001 * 117.49975 * 145.01965 * 13 12 11 34 34 H 1.09006 * 117.50076 * 214.98034 * 14 12 11 35 35 H 1.09002 * 117.49955 * 0.02562 * 14 12 11 36 36 H 1.07998 * 119.57915 * 359.97438 * 19 18 15 37 37 H 1.07999 * 120.78841 * 0.02562 * 25 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 7 3.9997 -2.5754 -0.0001 11 6 4.1401 -3.3026 -1.2641 12 6 5.4972 -2.9778 -1.8914 13 6 5.4974 -2.2515 -3.2380 14 6 5.8848 -3.7307 -3.1657 15 16 4.3930 -3.3148 1.4285 16 8 5.3092 -4.3516 1.1049 17 8 4.6901 -2.2748 2.3501 18 6 2.9361 -4.1065 2.0245 19 6 2.6533 -5.4111 1.6670 20 7 1.5657 -6.0123 2.1084 21 6 0.7080 -5.4000 2.9026 22 17 -0.7064 -6.2432 3.4523 23 6 0.9245 -4.0909 3.3026 24 9 0.0428 -3.4688 4.1155 25 6 2.0627 -3.4299 2.8621 26 1 -0.4850 0.8401 -0.0004 27 1 3.8751 -0.6798 -0.8895 28 1 3.8745 -0.6810 0.8905 29 1 4.0738 -4.3742 -1.0761 30 1 3.3438 -3.0034 -1.9457 31 1 6.2939 -2.7347 -1.1884 32 1 4.5306 -2.0055 -3.6773 33 1 6.2944 -1.5309 -3.4211 34 1 6.9367 -3.9825 -3.3013 35 1 5.1728 -4.4572 -3.5574 36 1 3.3315 -5.9450 1.0180 37 1 2.2608 -2.4111 3.1607 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279390900.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:45 Heat of formation + Delta-G solvation = -53.027445 kcal Electronic energy + Delta-G solvation = -26808.035546 eV Core-core repulsion = 22654.364189 eV Total energy + Delta-G solvation = -4153.671357 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 348.050 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.02410 -40.19868 -37.78569 -37.02853 -36.93386 -35.62862 -35.08239 -32.80636 -32.53167 -31.04127 -28.62239 -25.73106 -24.47510 -23.97608 -22.31813 -22.04997 -20.56979 -19.14575 -18.05439 -17.80614 -17.42367 -17.10296 -16.93806 -16.08509 -16.03811 -15.99918 -14.97568 -14.48517 -14.28897 -14.25304 -14.01640 -13.61339 -13.44611 -12.95208 -12.91212 -12.55837 -12.30008 -12.07985 -11.92306 -11.85219 -11.77686 -11.57219 -11.45112 -11.36914 -11.31882 -10.96532 -10.67670 -10.42851 -10.24637 -10.09099 -9.91506 -9.76427 -9.68185 -9.15570 -8.77137 -8.35662 -6.27433 -4.30648 0.15577 0.65406 0.82418 1.45669 2.98375 3.17152 3.25590 3.29318 3.33422 3.69282 3.89990 4.01351 4.13495 4.24598 4.36860 4.68493 4.76539 4.89281 5.03046 5.06508 5.14137 5.21197 5.32944 5.41702 5.62043 5.65931 5.76377 5.95789 6.03559 6.17412 6.20664 6.29060 6.44979 6.70123 6.91895 7.13834 7.23157 7.38649 8.25886 8.73033 9.31798 10.84410 Molecular weight = 348.05amu Principal moments of inertia in cm(-1) A = 0.009449 B = 0.005198 C = 0.003942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2962.541552 B = 5384.899311 C = 7101.552212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.080 3.920 3 Si 0.866 3.134 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.258 1.258 7 C -0.552 4.552 8 H 0.078 0.922 9 C 0.212 3.788 10 N -0.967 5.967 11 C 0.158 3.842 12 C -0.163 4.163 13 C -0.178 4.178 14 C -0.178 4.178 15 S 2.695 3.305 16 O -0.958 6.958 17 O -0.948 6.948 18 C -0.697 4.697 19 C 0.201 3.799 20 N -0.467 5.467 21 C 0.185 3.815 22 Cl -0.007 7.007 23 C 0.053 3.947 24 F -0.110 7.110 25 C 0.032 3.968 26 H 0.267 0.733 27 H 0.042 0.958 28 H 0.051 0.949 29 H 0.076 0.924 30 H 0.091 0.909 31 H 0.104 0.896 32 H 0.098 0.902 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.186 0.814 37 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.094 -8.775 0.818 10.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.125 4.125 3 Si 0.692 3.308 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.183 1.183 7 C -0.591 4.591 8 H 0.096 0.904 9 C 0.089 3.911 10 N -0.805 5.805 11 C 0.032 3.968 12 C -0.183 4.183 13 C -0.215 4.215 14 C -0.215 4.215 15 S 2.780 3.220 16 O -0.949 6.949 17 O -0.938 6.938 18 C -0.781 4.781 19 C 0.042 3.958 20 N -0.178 5.178 21 C 0.020 3.980 22 Cl 0.022 6.978 23 C 0.030 3.970 24 F -0.089 7.089 25 C 0.004 3.996 26 H 0.077 0.923 27 H 0.060 0.940 28 H 0.069 0.931 29 H 0.094 0.906 30 H 0.109 0.891 31 H 0.122 0.878 32 H 0.116 0.884 33 H 0.108 0.892 34 H 0.110 0.890 35 H 0.113 0.887 36 H 0.203 0.797 37 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 6.326 -9.574 1.096 11.528 hybrid contribution -0.824 1.631 0.306 1.852 sum 5.502 -7.944 1.401 9.764 Atomic orbital electron populations 1.69887 1.06238 1.27365 1.49011 1.24841 0.94691 0.98993 0.93943 0.86993 0.80917 0.83902 0.79012 1.19828 1.20847 1.18252 1.21396 0.89240 0.94974 1.53448 0.90402 1.19727 0.95690 0.76585 0.99145 1.57164 1.81028 1.23801 1.18531 1.20769 0.95223 0.94989 0.85804 1.22787 0.99633 1.04909 0.91016 1.23055 1.03200 0.94594 1.00678 1.22924 1.01834 0.95118 1.01670 1.02120 0.73352 0.73145 0.73333 1.93568 1.58678 1.58474 1.84130 1.93573 1.82452 1.55407 1.62403 1.32430 1.25719 1.07553 1.12426 1.22475 0.91098 0.89580 0.92640 1.67187 1.03183 1.37283 1.10143 1.22032 0.91889 0.88801 0.95259 1.98433 1.34694 1.78126 1.86587 1.18133 0.91138 0.90897 0.96855 1.91593 1.66244 1.81770 1.69274 1.21438 0.88508 1.00487 0.89131 0.92292 0.93962 0.93141 0.90627 0.89105 0.87753 0.88367 0.89186 0.89017 0.88721 0.79674 0.80460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.92 13.96 55.43 0.77 -24.15 16 2 C 0.08 2.08 5.47 -17.82 -0.10 1.98 16 3 Si 0.87 19.53 27.47 -169.99 -4.67 14.86 16 4 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.26 -5.60 6.54 56.52 0.37 -5.23 16 7 C -0.55 -13.51 9.94 -34.44 -0.34 -13.85 16 8 H 0.08 2.06 8.06 -52.49 -0.42 1.63 16 9 C 0.21 4.40 4.50 -5.19 -0.02 4.38 16 10 N -0.97 -16.96 2.77 -115.66 -0.32 -17.28 16 11 C 0.16 2.35 5.62 -4.04 -0.02 2.32 16 12 C -0.16 -2.21 6.01 -90.62 -0.54 -2.76 16 13 C -0.18 -2.18 10.18 -26.70 -0.27 -2.45 16 14 C -0.18 -1.97 10.25 -26.69 -0.27 -2.24 16 15 S 2.70 45.69 5.66 -107.50 -0.61 45.08 16 16 O -0.96 -15.92 16.28 -57.17 -0.93 -16.85 16 17 O -0.95 -18.37 15.90 -57.17 -0.91 -19.28 16 18 C -0.70 -11.30 5.99 -39.45 -0.24 -11.54 16 19 C 0.20 2.97 10.68 -17.55 -0.19 2.78 16 20 N -0.47 -7.34 10.34 -10.31 -0.11 -7.45 16 21 C 0.19 2.97 7.28 -17.37 -0.13 2.84 16 22 Cl -0.01 -0.10 28.78 -51.86 -1.49 -1.59 16 23 C 0.05 0.89 7.31 -39.24 -0.29 0.61 16 24 F -0.11 -1.84 16.85 2.25 0.04 -1.80 16 25 C 0.03 0.54 9.63 -39.22 -0.38 0.16 16 26 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 27 H 0.04 0.85 7.54 -51.93 -0.39 0.46 16 28 H 0.05 1.09 5.97 -51.93 -0.31 0.78 16 29 H 0.08 0.96 7.61 -51.93 -0.40 0.56 16 30 H 0.09 1.38 7.84 -51.93 -0.41 0.98 16 31 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 32 H 0.10 1.22 8.03 -51.93 -0.42 0.80 16 33 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.19 2.16 7.63 -52.49 -0.40 1.76 16 37 H 0.18 2.95 7.70 -52.49 -0.40 2.55 16 LS Contribution 352.89 15.07 5.32 5.32 Total: -1.00 -29.18 352.89 -9.70 -38.89 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -4.01 Total: 2.02 kcal Atomic # 6 Polarization: -14.98 SS G_CDS: -2.79 Total: -17.77 kcal Atomic # 7 Polarization: -49.22 SS G_CDS: 0.35 Total: -48.88 kcal Atomic # 8 Polarization: -34.29 SS G_CDS: -1.84 Total: -36.13 kcal Atomic # 9 Polarization: -1.84 SS G_CDS: 0.04 Total: -1.80 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -4.67 Total: 14.86 kcal Atomic # 16 Polarization: 45.69 SS G_CDS: -0.61 Total: 45.08 kcal Atomic # 17 Polarization: -0.10 SS G_CDS: -1.49 Total: -1.59 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.18 -9.70 -38.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279390900.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.142 kcal (2) G-P(sol) polarization free energy of solvation -29.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds