Wall clock time and date at job start Wed Apr 1 2020 05:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00530 * 2 1 4 4 H 1.48504 * 109.47061 * 270.00261 * 3 2 1 5 5 H 1.48497 * 109.46906 * 29.99434 * 3 2 1 6 6 H 1.48498 * 109.47403 * 149.99880 * 3 2 1 7 7 C 1.37880 * 119.99594 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00010 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 180.02562 * 7 2 1 10 10 N 1.46499 * 109.46992 * 179.97438 * 9 7 2 11 11 C 1.46502 * 119.99999 * 85.00120 * 10 9 7 12 12 C 1.53000 * 109.47424 * 84.99501 * 11 10 9 13 13 C 1.52994 * 117.50267 * 243.75126 * 12 11 10 14 14 C 1.52998 * 117.50019 * 175.08658 * 12 11 10 15 15 S 1.65593 * 120.00395 * 264.99836 * 10 9 7 16 16 O 1.42100 * 106.40784 * 203.54110 * 15 10 9 17 17 O 1.42105 * 106.40278 * 336.46109 * 15 10 9 18 18 C 1.76196 * 107.22113 * 89.99978 * 15 10 9 19 19 C 1.38192 * 120.39140 * 89.99805 * 18 15 10 20 20 N 1.31875 * 120.83606 * 179.97438 * 19 18 15 21 21 C 1.31954 * 121.73223 * 0.02562 * 20 19 18 22 22 Cl 1.73597 * 119.65421 * 180.02562 * 21 20 19 23 23 C 1.38587 * 120.69856 * 0.02562 * 21 20 19 24 24 F 1.35094 * 120.44984 * 179.97438 * 23 21 20 25 25 C 1.38643 * 120.39371 * 269.72987 * 18 15 10 26 26 H 0.97002 * 119.99739 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 28 28 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 29 29 H 1.08995 * 109.47474 * 205.00200 * 11 10 9 30 30 H 1.09003 * 109.46943 * 324.99971 * 11 10 9 31 31 H 1.09003 * 115.54578 * 29.42514 * 12 11 10 32 32 H 1.09005 * 117.49741 * 359.97438 * 13 12 11 33 33 H 1.09001 * 117.49975 * 145.01965 * 13 12 11 34 34 H 1.09006 * 117.50076 * 214.98034 * 14 12 11 35 35 H 1.09002 * 117.49955 * 0.02562 * 14 12 11 36 36 H 1.07998 * 119.57915 * 359.97438 * 19 18 15 37 37 H 1.07999 * 120.78841 * 0.02562 * 25 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 7 3.9997 -2.5754 -0.0001 11 6 4.1401 -3.3026 -1.2641 12 6 5.4972 -2.9778 -1.8914 13 6 5.4974 -2.2515 -3.2380 14 6 5.8848 -3.7307 -3.1657 15 16 4.3930 -3.3148 1.4285 16 8 5.3092 -4.3516 1.1049 17 8 4.6901 -2.2748 2.3501 18 6 2.9361 -4.1065 2.0245 19 6 2.6533 -5.4111 1.6670 20 7 1.5657 -6.0123 2.1084 21 6 0.7080 -5.4000 2.9026 22 17 -0.7064 -6.2432 3.4523 23 6 0.9245 -4.0909 3.3026 24 9 0.0428 -3.4688 4.1155 25 6 2.0627 -3.4299 2.8621 26 1 -0.4850 0.8401 -0.0004 27 1 3.8751 -0.6798 -0.8895 28 1 3.8745 -0.6810 0.8905 29 1 4.0738 -4.3742 -1.0761 30 1 3.3438 -3.0034 -1.9457 31 1 6.2939 -2.7347 -1.1884 32 1 4.5306 -2.0055 -3.6773 33 1 6.2944 -1.5309 -3.4211 34 1 6.9367 -3.9825 -3.3013 35 1 5.1728 -4.4572 -3.5574 36 1 3.3315 -5.9450 1.0180 37 1 2.2608 -2.4111 3.1607 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279390900.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:44 Heat of formation + Delta-G solvation = -71.081754 kcal Electronic energy + Delta-G solvation = -26808.818440 eV Core-core repulsion = 22654.364189 eV Total energy + Delta-G solvation = -4154.454251 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 348.050 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -50.34280 -41.45677 -38.90254 -38.43250 -38.13555 -37.03804 -36.45087 -34.41457 -34.08514 -32.30853 -30.26299 -27.12884 -25.77681 -25.24537 -23.90076 -23.07865 -21.65095 -20.49840 -19.38345 -19.11466 -18.94258 -18.70272 -18.34416 -17.42795 -17.34762 -17.34120 -16.24332 -16.08539 -15.62118 -15.46119 -15.28512 -14.96319 -14.71738 -14.42160 -14.22638 -14.19998 -13.74833 -13.40946 -13.27889 -13.25553 -13.10013 -13.05596 -12.84593 -12.60276 -12.44210 -12.32561 -12.21110 -11.97098 -11.70715 -11.48712 -11.19823 -11.16410 -10.75440 -10.71407 -10.43051 -9.83297 -8.27535 -6.32762 -1.13701 -0.69960 -0.46940 0.22642 1.38533 1.43349 1.51356 1.68339 1.99903 2.36271 2.40041 2.57243 2.92098 3.01449 3.07326 3.08949 3.43799 3.46393 3.79724 3.89350 4.01987 4.05826 4.22370 4.26885 4.38987 4.56533 4.84640 4.88803 4.90796 4.93439 5.02310 5.15246 5.29952 5.38951 5.43315 5.48425 5.72227 5.97790 6.28807 6.72937 7.32578 8.87182 Molecular weight = 348.05amu Principal moments of inertia in cm(-1) A = 0.009449 B = 0.005198 C = 0.003942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2962.541552 B = 5384.899311 C = 7101.552212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.025 3.975 3 Si 0.918 3.082 4 H -0.262 1.262 5 H -0.289 1.289 6 H -0.243 1.243 7 C -0.537 4.537 8 H 0.050 0.950 9 C 0.219 3.781 10 N -0.970 5.970 11 C 0.150 3.850 12 C -0.185 4.185 13 C -0.183 4.183 14 C -0.157 4.157 15 S 2.710 3.290 16 O -0.951 6.951 17 O -0.974 6.974 18 C -0.703 4.703 19 C 0.208 3.792 20 N -0.470 5.470 21 C 0.183 3.817 22 Cl 0.012 6.988 23 C 0.039 3.961 24 F -0.114 7.114 25 C 0.018 3.982 26 H 0.266 0.734 27 H 0.054 0.946 28 H 0.046 0.954 29 H 0.098 0.902 30 H 0.082 0.918 31 H 0.099 0.901 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.220 0.780 37 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.763 -9.711 -0.118 12.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.174 4.174 3 Si 0.742 3.258 4 H -0.186 1.186 5 H -0.215 1.215 6 H -0.166 1.166 7 C -0.577 4.577 8 H 0.068 0.932 9 C 0.094 3.906 10 N -0.808 5.808 11 C 0.025 3.975 12 C -0.205 4.205 13 C -0.220 4.220 14 C -0.195 4.195 15 S 2.796 3.204 16 O -0.941 6.941 17 O -0.964 6.964 18 C -0.789 4.789 19 C 0.050 3.950 20 N -0.181 5.181 21 C 0.018 3.982 22 Cl 0.040 6.960 23 C 0.015 3.985 24 F -0.093 7.093 25 C -0.010 4.010 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.064 0.936 29 H 0.116 0.884 30 H 0.101 0.899 31 H 0.117 0.883 32 H 0.111 0.889 33 H 0.116 0.884 34 H 0.125 0.875 35 H 0.125 0.875 36 H 0.237 0.763 37 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 8.030 -10.529 0.146 13.243 hybrid contribution -1.376 1.782 0.599 2.330 sum 6.655 -8.747 0.745 11.016 Atomic orbital electron populations 1.70024 1.07977 1.28022 1.51619 1.25600 0.95257 1.02458 0.94119 0.86135 0.80180 0.79854 0.79608 1.18637 1.21457 1.16625 1.21608 0.91144 0.93639 1.51263 0.93168 1.19465 0.93122 0.78661 0.99347 1.57112 1.80848 1.22882 1.19915 1.21011 0.95944 0.95956 0.84580 1.22732 0.98689 1.07311 0.91729 1.23115 1.03363 0.95894 0.99635 1.23045 1.03073 0.94520 0.98828 1.01607 0.73248 0.72791 0.72715 1.93568 1.58592 1.57963 1.83989 1.93538 1.83091 1.56580 1.63239 1.32354 1.25421 1.08282 1.12802 1.23054 0.90999 0.89025 0.91951 1.67323 1.03413 1.37161 1.10197 1.22221 0.92422 0.88706 0.94850 1.98436 1.33605 1.77596 1.86318 1.18214 0.91281 0.91466 0.97511 1.91576 1.66337 1.81924 1.69442 1.21522 0.89113 1.00613 0.89723 0.92520 0.92789 0.93578 0.88366 0.89925 0.88321 0.88916 0.88356 0.87460 0.87495 0.76329 0.80998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -53.82 13.96 21.45 0.30 -53.52 16 2 C 0.03 1.32 5.47 84.66 0.46 1.79 16 3 Si 0.92 39.90 27.47 68.60 1.88 41.79 16 4 H -0.26 -10.83 7.11 99.48 0.71 -10.13 16 5 H -0.29 -12.74 7.11 99.48 0.71 -12.04 16 6 H -0.24 -9.86 6.54 99.48 0.65 -9.21 16 7 C -0.54 -26.48 9.94 25.60 0.25 -26.23 16 8 H 0.05 2.71 8.06 -2.91 -0.02 2.68 16 9 C 0.22 8.91 4.50 85.63 0.39 9.29 16 10 N -0.97 -32.90 2.77 -519.84 -1.44 -34.34 16 11 C 0.15 4.19 5.62 86.38 0.49 4.67 16 12 C -0.18 -4.59 6.01 -10.80 -0.06 -4.65 16 13 C -0.18 -4.06 10.18 30.62 0.31 -3.75 16 14 C -0.16 -2.99 10.25 30.62 0.31 -2.68 16 15 S 2.71 88.72 5.66 -56.49 -0.32 88.40 16 16 O -0.95 -29.43 16.28 -128.00 -2.08 -31.52 16 17 O -0.97 -37.28 15.90 -128.00 -2.04 -39.32 16 18 C -0.70 -22.26 5.99 22.36 0.13 -22.13 16 19 C 0.21 5.77 10.68 84.68 0.90 6.68 16 20 N -0.47 -14.06 10.34 -186.53 -1.93 -15.99 16 21 C 0.18 5.73 7.28 84.76 0.62 6.35 16 22 Cl 0.01 0.31 28.78 -2.72 -0.08 0.23 16 23 C 0.04 1.31 7.31 22.49 0.16 1.47 16 24 F -0.11 -3.88 16.85 44.97 0.76 -3.12 16 25 C 0.02 0.60 9.63 22.50 0.22 0.82 16 26 H 0.27 14.51 8.31 -92.71 -0.77 13.74 16 27 H 0.05 2.09 7.54 -2.39 -0.02 2.08 16 28 H 0.05 1.95 5.97 -2.39 -0.01 1.94 16 29 H 0.10 2.23 7.61 -2.39 -0.02 2.22 16 30 H 0.08 2.43 7.84 -2.39 -0.02 2.41 16 31 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 32 H 0.09 2.15 8.03 -2.38 -0.02 2.13 16 33 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.11 1.73 8.14 -2.38 -0.02 1.71 16 35 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.22 4.39 7.63 -2.91 -0.02 4.37 16 37 H 0.17 5.96 7.70 -2.91 -0.02 5.94 16 Total: -1.00 -61.93 352.89 0.30 -61.63 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: 1.06 Total: 14.12 kcal Atomic # 6 Polarization: -32.55 SS G_CDS: 4.19 Total: -28.36 kcal Atomic # 7 Polarization: -100.79 SS G_CDS: -3.07 Total: -103.85 kcal Atomic # 8 Polarization: -66.72 SS G_CDS: -4.12 Total: -70.84 kcal Atomic # 9 Polarization: -3.88 SS G_CDS: 0.76 Total: -3.12 kcal Atomic # 14 Polarization: 39.90 SS G_CDS: 1.88 Total: 41.79 kcal Atomic # 16 Polarization: 88.72 SS G_CDS: -0.32 Total: 88.40 kcal Atomic # 17 Polarization: 0.31 SS G_CDS: -0.08 Total: 0.23 kcal Total: -61.93 0.30 -61.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279390900.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.452 kcal (2) G-P(sol) polarization free energy of solvation -61.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds